RNA–Protein interactions for RNA: ENST00000527551.1

USH1C-206, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 371 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-206ENST00000527551 NISCHQ9Y2I1 1504 aa30.78■■■□□ 2.52
USH1C-206ENST00000527551 CCDC180Q9P1Z9 1646 aa27.4■■□□□ 1.98
USH1C-206ENST00000527551 ABCC9O60706 1549 aa26.44■■□□□ 1.82
USH1C-206ENST00000527551 ZCCHC6Q5VYS8 1495 aaKnown RBP25.69■■□□□ 1.7
USH1C-206ENST00000527551 NACADO15069 1562 aa25.68■■□□□ 1.7
USH1C-206ENST00000527551 RB1CC1Q8TDY2 1594 aa25.65■■□□□ 1.7
USH1C-206ENST00000527551 MYO15BQ96JP2 1530 aa25.63■■□□□ 1.69
USH1C-206ENST00000527551 DCAF1Q9Y4B6 1507 aa25.58■■□□□ 1.68
USH1C-206ENST00000527551 DCAF8L2P0C7V8 631 aa25.49■■□□□ 1.67
USH1C-206ENST00000527551 UNC13AQ9UPW8 1703 aa25.07■■□□□ 1.6
USH1C-206ENST00000527551 SCRIBQ14160 1630 aa24.86■■□□□ 1.57
USH1C-206ENST00000527551 BICRAQ9NZM4 1560 aa24.81■■□□□ 1.56
USH1C-206ENST00000527551 SHROOM4Q9ULL8 1493 aa24.71■■□□□ 1.55
USH1C-206ENST00000527551 PABPN1Q86U42 306 aaKnown RBP eCLIP24.68■■□□□ 1.54
USH1C-206ENST00000527551 EIF4G1Q04637 1599 aaKnown RBP24.16■■□□□ 1.46
USH1C-206ENST00000527551 DNAJC5BQ9UF47 199 aa24.04■■□□□ 1.44
USH1C-206ENST00000527551 CC2D2AQ9P2K1 1620 aa24■■□□□ 1.43
USH1C-206ENST00000527551 BAZ1AQ9NRL2 1556 aaPredicted RBP23.89■■□□□ 1.41
USH1C-206ENST00000527551 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
USH1C-206ENST00000527551 SMARCA4P51532 1647 aa23.87■■□□□ 1.41
USH1C-206ENST00000527551 SMARCA2P51531 1590 aa23.71■■□□□ 1.39
USH1C-206ENST00000527551 MROH2BQ7Z745 1585 aa23.68■■□□□ 1.38
USH1C-206ENST00000527551 PEG3Q9GZU2 1588 aa23.68■■□□□ 1.38
USH1C-206ENST00000527551 NCAPD3P42695 1498 aa23.65■■□□□ 1.38
USH1C-206ENST00000527551 ATAD2BQ9ULI0 1458 aa23.65■■□□□ 1.38
USH1C-206ENST00000527551 HMGXB3Q12766 1538 aa23.59■■□□□ 1.37
USH1C-206ENST00000527551 BAZ1BQ9UIG0 1483 aaKnown RBP23.49■■□□□ 1.35
USH1C-206ENST00000527551 RSF1Q96T23 1441 aaPredicted RBP23.48■■□□□ 1.35
USH1C-206ENST00000527551 WIZO95785 1651 aa23.45■■□□□ 1.34
USH1C-206ENST00000527551 TOP2AP11388 1531 aaKnown RBP23.26■■□□□ 1.31
USH1C-206ENST00000527551 LAMC3Q9Y6N6 1575 aa23.05■■□□□ 1.28
USH1C-206ENST00000527551 CADPSQ9ULU8 1353 aa22.94■■□□□ 1.26
USH1C-206ENST00000527551 NESP48681 1621 aa22.93■■□□□ 1.26
USH1C-206ENST00000527551 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
USH1C-206ENST00000527551 SUPT5HO00267 1087 aaKnown RBP22.92■■□□□ 1.26
USH1C-206ENST00000527551 CFTRP13569 1480 aa22.86■■□□□ 1.25
USH1C-206ENST00000527551 PDS5BQ9NTI5 1447 aa22.84■■□□□ 1.25
USH1C-206ENST00000527551 ERCC6Q03468 1493 aa22.83■■□□□ 1.25
USH1C-206ENST00000527551 PRDM2Q13029 1718 aa22.82■■□□□ 1.24
USH1C-206ENST00000527551 KIF21AQ7Z4S6 1674 aa22.75■■□□□ 1.23
USH1C-206ENST00000527551 FANCD2Q9BXW9 1451 aa22.67■■□□□ 1.22
USH1C-206ENST00000527551 CEP164Q9UPV0 1460 aa22.66■■□□□ 1.22
USH1C-206ENST00000527551 THOC2Q8NI27 1593 aaKnown RBP22.63■■□□□ 1.21
USH1C-206ENST00000527551 CUX2O14529 1486 aa22.59■■□□□ 1.21
USH1C-206ENST00000527551 MRC2Q9UBG0 1479 aa22.58■■□□□ 1.2
USH1C-206ENST00000527551 WDR62O43379 1518 aa22.52■■□□□ 1.2
USH1C-206ENST00000527551 ABCC8Q09428 1581 aa22.44■■□□□ 1.18
USH1C-206ENST00000527551 URB2Q14146 1524 aaKnown RBP22.41■■□□□ 1.18
USH1C-206ENST00000527551 DNMBPQ6XZF7 1577 aa22.37■■□□□ 1.17
USH1C-206ENST00000527551 TOPBP1Q92547 1522 aa22.33■■□□□ 1.17
USH1C-206ENST00000527551 CUX1P39880 1505 aa22.21■■□□□ 1.15
USH1C-206ENST00000527551 IFT140Q96RY7 1462 aa22.18■■□□□ 1.14
USH1C-206ENST00000527551 WRNQ14191 1432 aaPredicted RBP eCLIP22.15■■□□□ 1.14
USH1C-206ENST00000527551 BIVM-ERCC5R4GMW8 1640 aa22.15■■□□□ 1.14
USH1C-206ENST00000527551 POLA1P09884 1462 aaPredicted RBP22.15■■□□□ 1.14
USH1C-206ENST00000527551 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
USH1C-206ENST00000527551 FGD5Q6ZNL6 1462 aa22.11■■□□□ 1.13
USH1C-206ENST00000527551 TARBP1Q13395 1621 aaKnown RBP22.11■■□□□ 1.13
USH1C-206ENST00000527551 SYNJ1O43426 1573 aa22.08■■□□□ 1.12
USH1C-206ENST00000527551 WDR97A6NE52 1622 aa22.06■■□□□ 1.12
USH1C-206ENST00000527551 SOGA1O94964 1423 aa22.06■■□□□ 1.12
USH1C-206ENST00000527551 RAD54L2Q9Y4B4 1467 aa21.99■■□□□ 1.11
USH1C-206ENST00000527551 ZNF608Q9ULD9 1512 aaPredicted RBP21.98■■□□□ 1.11
USH1C-206ENST00000527551 EIF4G3O43432 1585 aaKnown RBP21.98■■□□□ 1.11
USH1C-206ENST00000527551 ABCA10Q8WWZ4 1543 aa21.95■■□□□ 1.1
USH1C-206ENST00000527551 AQRO60306 1485 aaKnown RBP eCLIP21.88■■□□□ 1.09
USH1C-206ENST00000527551 ABCA5Q8WWZ7 1642 aa21.86■■□□□ 1.09
USH1C-206ENST00000527551 TDRD9Q8NDG6 1382 aaKnown RBP21.86■■□□□ 1.09
USH1C-206ENST00000527551 GAPVD1Q14C86 1478 aa21.83■■□□□ 1.08
USH1C-206ENST00000527551 GRIN2BQ13224 1484 aa21.82■■□□□ 1.08
USH1C-206ENST00000527551 PBRM1Q86U86 1689 aa21.82■■□□□ 1.08
USH1C-206ENST00000527551 MAGI1Q96QZ7 1491 aaPredicted RBP21.77■■□□□ 1.07
USH1C-206ENST00000527551 ERICH3Q5RHP9 1530 aa21.72■■□□□ 1.07
USH1C-206ENST00000527551 SNAPC4Q5SXM2 1469 aa21.71■■□□□ 1.07
USH1C-206ENST00000527551 TRIM41Q8WV44 630 aa21.71■■□□□ 1.07
USH1C-206ENST00000527551 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
USH1C-206ENST00000527551 CHD1O14646 1710 aa21.68■■□□□ 1.06
USH1C-206ENST00000527551 SYNJ2O15056 1496 aa21.65■■□□□ 1.06
USH1C-206ENST00000527551 OSCARQ8IYS5 282 aa21.63■■□□□ 1.05
USH1C-206ENST00000527551 ADAMTS12P58397 1594 aa21.62■■□□□ 1.05
USH1C-206ENST00000527551 DNAJC5Q9H3Z4 198 aa21.61■■□□□ 1.05
USH1C-206ENST00000527551 FHAD1B1AJZ9 1412 aa21.59■■□□□ 1.05
USH1C-206ENST00000527551 CUL7Q14999 1698 aa21.59■■□□□ 1.05
USH1C-206ENST00000527551 CHMP7Q8WUX9 453 aaPredicted RBP21.58■■□□□ 1.05
USH1C-206ENST00000527551 FBLN2P98095 1184 aa21.55■■□□□ 1.04
USH1C-206ENST00000527551 IGF1RP08069 1367 aa21.54■■□□□ 1.04
USH1C-206ENST00000527551 CHIC1Q5VXU3 224 aa21.53■■□□□ 1.04
USH1C-206ENST00000527551 GRIN2AQ12879 1464 aa21.52■■□□□ 1.04
USH1C-206ENST00000527551 EEA1Q15075 1411 aa21.46■■□□□ 1.03
USH1C-206ENST00000527551 CLASP1Q7Z460 1538 aa21.45■■□□□ 1.02
USH1C-206ENST00000527551 RUSC2Q8N2Y8 1516 aa21.45■■□□□ 1.02
USH1C-206ENST00000527551 CARMIL1Q5VZK9 1371 aa21.43■■□□□ 1.02
USH1C-206ENST00000527551 NUP160Q12769 1436 aa21.42■■□□□ 1.02
USH1C-206ENST00000527551 CEP170Q5SW79 1584 aa21.39■■□□□ 1.01
USH1C-206ENST00000527551 RAPGEF2Q9Y4G8 1499 aa21.35■■□□□ 1.01
USH1C-206ENST00000527551 PRXQ9BXM0 1461 aa21.32■■□□□ 1
USH1C-206ENST00000527551 CSRNP3Q8WYN3 585 aa21.31■■□□□ 1
USH1C-206ENST00000527551 SHROOM2Q13796 1616 aa21.29■■□□□ 1
USH1C-206ENST00000527551 RIMBP3CA6NJZ7 1639 aa21.28■■□□□ 1
USH1C-206ENST00000527551 RIMBP3BA6NNM3 1639 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms