RNA–Protein interactions for RNA: ENST00000527339.1

LTBP3-208, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 3

Gene LTBP3, Length 619 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-208ENST00000527339 NISCHQ9Y2I1 1504 aa42.05■■■■■ 4.32
LTBP3-208ENST00000527339 ABCC9O60706 1549 aa38.1■■■■□ 3.69
LTBP3-208ENST00000527339 CCDC180Q9P1Z9 1646 aa37.69■■■■□ 3.62
LTBP3-208ENST00000527339 DNAJC5BQ9UF47 199 aa36.15■■■■□ 3.38
LTBP3-208ENST00000527339 RB1CC1Q8TDY2 1594 aa36.02■■■■□ 3.36
LTBP3-208ENST00000527339 NACADO15069 1562 aa35.72■■■■□ 3.31
LTBP3-208ENST00000527339 DCAF8L2P0C7V8 631 aa35.56■■■■□ 3.28
LTBP3-208ENST00000527339 PABPN1Q86U42 306 aaKnown RBP eCLIP35.49■■■■□ 3.277e-7■■■■□ 25.6
LTBP3-208ENST00000527339 UNC13AQ9UPW8 1703 aa35.32■■■■□ 3.25
LTBP3-208ENST00000527339 BICRAQ9NZM4 1560 aa35.14■■■■□ 3.22
LTBP3-208ENST00000527339 MYO15BQ96JP2 1530 aa35.12■■■■□ 3.21
LTBP3-208ENST00000527339 ZCCHC6Q5VYS8 1495 aaKnown RBP35.05■■■■□ 3.2
LTBP3-208ENST00000527339 DCAF1Q9Y4B6 1507 aa34.83■■■■□ 3.17
LTBP3-208ENST00000527339 SCRIBQ14160 1630 aa34.43■■■■□ 3.1
LTBP3-208ENST00000527339 SHROOM4Q9ULL8 1493 aa34.42■■■■□ 3.1
LTBP3-208ENST00000527339 CC2D2AQ9P2K1 1620 aa34.37■■■■□ 3.09
LTBP3-208ENST00000527339 CECR2Q9BXF3 1484 aa34.31■■■■□ 3.08
LTBP3-208ENST00000527339 EIF4G1Q04637 1599 aaKnown RBP34.23■■■■□ 3.07
LTBP3-208ENST00000527339 DNAJC5Q9H3Z4 198 aa33.25■■■□□ 2.91
LTBP3-208ENST00000527339 NCAPD3P42695 1498 aa33.05■■■□□ 2.88
LTBP3-208ENST00000527339 ATAD2BQ9ULI0 1458 aa32.93■■■□□ 2.86
LTBP3-208ENST00000527339 CUX2O14529 1486 aa32.85■■■□□ 2.85
LTBP3-208ENST00000527339 ERCC6Q03468 1493 aa32.81■■■□□ 2.84
LTBP3-208ENST00000527339 SMARCA4P51532 1647 aa32.8■■■□□ 2.84
LTBP3-208ENST00000527339 SMARCA2P51531 1590 aa32.72■■■□□ 2.83
LTBP3-208ENST00000527339 HMGXB3Q12766 1538 aa32.72■■■□□ 2.83
LTBP3-208ENST00000527339 NESP48681 1621 aa32.71■■■□□ 2.83
LTBP3-208ENST00000527339 BAZ1AQ9NRL2 1556 aaPredicted RBP32.61■■■□□ 2.81
LTBP3-208ENST00000527339 BAZ1BQ9UIG0 1483 aaKnown RBP32.53■■■□□ 2.8
LTBP3-208ENST00000527339 PEG3Q9GZU2 1588 aa32.46■■■□□ 2.79
LTBP3-208ENST00000527339 MROH2BQ7Z745 1585 aa32.41■■■□□ 2.78
LTBP3-208ENST00000527339 THOC2Q8NI27 1593 aaKnown RBP32.36■■■□□ 2.77
LTBP3-208ENST00000527339 LAMC3Q9Y6N6 1575 aa32.28■■■□□ 2.76
LTBP3-208ENST00000527339 KIF21AQ7Z4S6 1674 aa32.2■■■□□ 2.74
LTBP3-208ENST00000527339 PDS5BQ9NTI5 1447 aa32.09■■■□□ 2.73
LTBP3-208ENST00000527339 WIZO95785 1651 aa32.08■■■□□ 2.73
LTBP3-208ENST00000527339 RSF1Q96T23 1441 aaPredicted RBP32.03■■■□□ 2.72
LTBP3-208ENST00000527339 CADPSQ9ULU8 1353 aa32.02■■■□□ 2.72
LTBP3-208ENST00000527339 MRC2Q9UBG0 1479 aa31.87■■■□□ 2.69
LTBP3-208ENST00000527339 WDR62O43379 1518 aa31.82■■■□□ 2.68
LTBP3-208ENST00000527339 TOP2AP11388 1531 aaKnown RBP31.74■■■□□ 2.67
LTBP3-208ENST00000527339 CEP164Q9UPV0 1460 aa31.67■■■□□ 2.66
LTBP3-208ENST00000527339 TRIM41Q8WV44 630 aa31.67■■■□□ 2.66
LTBP3-208ENST00000527339 FANCD2Q9BXW9 1451 aa31.65■■■□□ 2.66
LTBP3-208ENST00000527339 CFTRP13569 1480 aa31.61■■■□□ 2.65
LTBP3-208ENST00000527339 URB2Q14146 1524 aaKnown RBP31.48■■■□□ 2.63
LTBP3-208ENST00000527339 OSCARQ8IYS5 282 aa31.33■■■□□ 2.61
LTBP3-208ENST00000527339 CCDC88BA6NC98 1476 aa31.33■■■□□ 2.61
LTBP3-208ENST00000527339 SUPT5HO00267 1087 aaKnown RBP31.22■■■□□ 2.59
LTBP3-208ENST00000527339 PRDM2Q13029 1718 aa31.17■■■□□ 2.58
LTBP3-208ENST00000527339 ZNF608Q9ULD9 1512 aaPredicted RBP31.16■■■□□ 2.58
LTBP3-208ENST00000527339 IFT140Q96RY7 1462 aa31.05■■■□□ 2.56
LTBP3-208ENST00000527339 TOPBP1Q92547 1522 aa31.04■■■□□ 2.56
LTBP3-208ENST00000527339 RIMBP3CA6NJZ7 1639 aa31■■■□□ 2.55
LTBP3-208ENST00000527339 RIMBP3BA6NNM3 1639 aa31■■■□□ 2.55
LTBP3-208ENST00000527339 RIMBP3Q9UFD9 1639 aa31■■■□□ 2.55
LTBP3-208ENST00000527339 EIF4G3O43432 1585 aaKnown RBP30.88■■■□□ 2.53
LTBP3-208ENST00000527339 ARHGEF11O15085 1522 aa30.87■■■□□ 2.53
LTBP3-208ENST00000527339 DNMBPQ6XZF7 1577 aa30.85■■■□□ 2.53
LTBP3-208ENST00000527339 ABCC8Q09428 1581 aa30.83■■■□□ 2.53
LTBP3-208ENST00000527339 AQRO60306 1485 aaKnown RBP eCLIP30.82■■■□□ 2.521e-9■■■■□ 23.4
LTBP3-208ENST00000527339 TARBP1Q13395 1621 aaKnown RBP30.8■■■□□ 2.52
LTBP3-208ENST00000527339 POLA1P09884 1462 aaPredicted RBP30.72■■■□□ 2.51
LTBP3-208ENST00000527339 CHD1O14646 1710 aa30.71■■■□□ 2.51
LTBP3-208ENST00000527339 CYB5RLQ6IPT4 315 aa30.68■■■□□ 2.5
LTBP3-208ENST00000527339 RAD54L2Q9Y4B4 1467 aa30.67■■■□□ 2.5
LTBP3-208ENST00000527339 FBLN2P98095 1184 aa30.6■■■□□ 2.49
LTBP3-208ENST00000527339 ARAP1Q96P48 1450 aa30.58■■■□□ 2.49
LTBP3-208ENST00000527339 TDRD9Q8NDG6 1382 aaKnown RBP30.58■■■□□ 2.49
LTBP3-208ENST00000527339 SOGA1O94964 1423 aa30.55■■■□□ 2.48
LTBP3-208ENST00000527339 FGD5Q6ZNL6 1462 aa30.48■■■□□ 2.47
LTBP3-208ENST00000527339 SNAPC4Q5SXM2 1469 aa30.45■■■□□ 2.47
LTBP3-208ENST00000527339 CUX1P39880 1505 aa30.45■■■□□ 2.47
LTBP3-208ENST00000527339 CLASP1Q7Z460 1538 aa30.37■■■□□ 2.45
LTBP3-208ENST00000527339 TRHP20396 242 aaPredicted RBP30.36■■■□□ 2.45
LTBP3-208ENST00000527339 WDR97A6NE52 1622 aa30.32■■■□□ 2.44
LTBP3-208ENST00000527339 CHMP7Q8WUX9 453 aaPredicted RBP30.3■■■□□ 2.44
LTBP3-208ENST00000527339 MAGI1Q96QZ7 1491 aaPredicted RBP30.29■■■□□ 2.44
LTBP3-208ENST00000527339 GRIN2BQ13224 1484 aa30.28■■■□□ 2.44
LTBP3-208ENST00000527339 SYNJ1O43426 1573 aa30.23■■■□□ 2.43
LTBP3-208ENST00000527339 SYNJ2O15056 1496 aa30.22■■■□□ 2.43
LTBP3-208ENST00000527339 WRNQ14191 1432 aaPredicted RBP eCLIP30.22■■■□□ 2.43
LTBP3-208ENST00000527339 BIVM-ERCC5R4GMW8 1640 aa30.2■■■□□ 2.43
LTBP3-208ENST00000527339 TOP2BQ02880 1626 aa30.18■■■□□ 2.42
LTBP3-208ENST00000527339 GAPVD1Q14C86 1478 aa30.16■■■□□ 2.42
LTBP3-208ENST00000527339 PBRM1Q86U86 1689 aa30.14■■■□□ 2.42
LTBP3-208ENST00000527339 ABCA10Q8WWZ4 1543 aa30.09■■■□□ 2.41
LTBP3-208ENST00000527339 ABCA5Q8WWZ7 1642 aa30.08■■■□□ 2.41
LTBP3-208ENST00000527339 ERCC6L2Q5T890 1561 aa29.98■■■□□ 2.39
LTBP3-208ENST00000527339 GRIN2AQ12879 1464 aa29.92■■■□□ 2.38
LTBP3-208ENST00000527339 CEP170Q5SW79 1584 aa29.87■■■□□ 2.37
LTBP3-208ENST00000527339 ADAMTS12P58397 1594 aa29.86■■■□□ 2.37
LTBP3-208ENST00000527339 NUP160Q12769 1436 aa29.85■■■□□ 2.37
LTBP3-208ENST00000527339 FHAD1B1AJZ9 1412 aa29.75■■■□□ 2.35
LTBP3-208ENST00000527339 SHROOM2Q13796 1616 aa29.74■■■□□ 2.35
LTBP3-208ENST00000527339 ERICH3Q5RHP9 1530 aa29.67■■■□□ 2.34
LTBP3-208ENST00000527339 AEBP2Q6ZN18 517 aaPredicted RBP29.61■■■□□ 2.33
LTBP3-208ENST00000527339 KIF27Q86VH2 1401 aa29.58■■■□□ 2.33
LTBP3-208ENST00000527339 PRG4Q92954 1404 aaPredicted RBP29.58■■■□□ 2.33
LTBP3-208ENST00000527339 JPH4Q96JJ6 628 aa29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms