RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 NISCHQ9Y2I1 1504 aa25.91■■□□□ 1.74
PRPF40B-204ENST00000527253 CCDC180Q9P1Z9 1646 aa23.08■■□□□ 1.28
PRPF40B-204ENST00000527253 ABCC9O60706 1549 aa22.96■■□□□ 1.27
PRPF40B-204ENST00000527253 RB1CC1Q8TDY2 1594 aa21.88■■□□□ 1.09
PRPF40B-204ENST00000527253 NACADO15069 1562 aa21.8■■□□□ 1.08
PRPF40B-204ENST00000527253 DCAF8L2P0C7V8 631 aa21.79■■□□□ 1.08
PRPF40B-204ENST00000527253 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
PRPF40B-204ENST00000527253 ZCCHC6Q5VYS8 1495 aaKnown RBP21.52■■□□□ 1.03
PRPF40B-204ENST00000527253 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
PRPF40B-204ENST00000527253 DNAJC5BQ9UF47 199 aa21.44■■□□□ 1.02
PRPF40B-204ENST00000527253 UNC13AQ9UPW8 1703 aa21.41■■□□□ 1.02
PRPF40B-204ENST00000527253 DCAF1Q9Y4B6 1507 aa21.39■■□□□ 1.01
PRPF40B-204ENST00000527253 BICRAQ9NZM4 1560 aa21.31■■□□□ 1
PRPF40B-204ENST00000527253 SCRIBQ14160 1630 aa21.1■□□□□ 0.97
PRPF40B-204ENST00000527253 SHROOM4Q9ULL8 1493 aa20.95■□□□□ 0.94
PRPF40B-204ENST00000527253 EIF4G1Q04637 1599 aaKnown RBP20.73■□□□□ 0.91
PRPF40B-204ENST00000527253 CC2D2AQ9P2K1 1620 aa20.72■□□□□ 0.91
PRPF40B-204ENST00000527253 CECR2Q9BXF3 1484 aa20.64■□□□□ 0.89
PRPF40B-204ENST00000527253 NCAPD3P42695 1498 aa20.17■□□□□ 0.82
PRPF40B-204ENST00000527253 SMARCA4P51532 1647 aa20.14■□□□□ 0.81
PRPF40B-204ENST00000527253 ATAD2BQ9ULI0 1458 aa20.14■□□□□ 0.81
PRPF40B-204ENST00000527253 BAZ1AQ9NRL2 1556 aaPredicted RBP20.06■□□□□ 0.8
PRPF40B-204ENST00000527253 SMARCA2P51531 1590 aa20.04■□□□□ 0.8
PRPF40B-204ENST00000527253 MROH2BQ7Z745 1585 aa20■□□□□ 0.79
PRPF40B-204ENST00000527253 HMGXB3Q12766 1538 aa19.98■□□□□ 0.79
PRPF40B-204ENST00000527253 PEG3Q9GZU2 1588 aa19.95■□□□□ 0.78
PRPF40B-204ENST00000527253 BAZ1BQ9UIG0 1483 aaKnown RBP19.92■□□□□ 0.78
PRPF40B-204ENST00000527253 NESP48681 1621 aa19.81■□□□□ 0.76
PRPF40B-204ENST00000527253 WIZO95785 1651 aa19.75■□□□□ 0.75
PRPF40B-204ENST00000527253 ERCC6Q03468 1493 aa19.74■□□□□ 0.75
PRPF40B-204ENST00000527253 RSF1Q96T23 1441 aaPredicted RBP19.67■□□□□ 0.74
PRPF40B-204ENST00000527253 CUX2O14529 1486 aa19.64■□□□□ 0.73
PRPF40B-204ENST00000527253 LAMC3Q9Y6N6 1575 aa19.61■□□□□ 0.73
PRPF40B-204ENST00000527253 CADPSQ9ULU8 1353 aa19.57■□□□□ 0.72
PRPF40B-204ENST00000527253 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
PRPF40B-204ENST00000527253 THOC2Q8NI27 1593 aaKnown RBP19.51■□□□□ 0.71
PRPF40B-204ENST00000527253 KIF21AQ7Z4S6 1674 aa19.49■□□□□ 0.71
PRPF40B-204ENST00000527253 TOP2AP11388 1531 aaKnown RBP19.49■□□□□ 0.71
PRPF40B-204ENST00000527253 DNAJC5Q9H3Z4 198 aa19.46■□□□□ 0.71
PRPF40B-204ENST00000527253 CFTRP13569 1480 aa19.38■□□□□ 0.69
PRPF40B-204ENST00000527253 MRC2Q9UBG0 1479 aa19.35■□□□□ 0.69
PRPF40B-204ENST00000527253 FANCD2Q9BXW9 1451 aa19.33■□□□□ 0.68
PRPF40B-204ENST00000527253 CCDC88BA6NC98 1476 aa19.31■□□□□ 0.68
PRPF40B-204ENST00000527253 CEP164Q9UPV0 1460 aa19.29■□□□□ 0.68
PRPF40B-204ENST00000527253 WDR62O43379 1518 aa19.29■□□□□ 0.68
PRPF40B-204ENST00000527253 URB2Q14146 1524 aaKnown RBP19.18■□□□□ 0.66
PRPF40B-204ENST00000527253 PRDM2Q13029 1718 aa19.12■□□□□ 0.65
PRPF40B-204ENST00000527253 TOPBP1Q92547 1522 aa19■□□□□ 0.63
PRPF40B-204ENST00000527253 SUPT5HO00267 1087 aaKnown RBP18.97■□□□□ 0.63
PRPF40B-204ENST00000527253 IFT140Q96RY7 1462 aa18.92■□□□□ 0.62
PRPF40B-204ENST00000527253 ZNF608Q9ULD9 1512 aaPredicted RBP18.92■□□□□ 0.62
PRPF40B-204ENST00000527253 ABCC8Q09428 1581 aa18.91■□□□□ 0.62
PRPF40B-204ENST00000527253 DNMBPQ6XZF7 1577 aa18.91■□□□□ 0.62
PRPF40B-204ENST00000527253 OSCARQ8IYS5 282 aa18.82■□□□□ 0.6
PRPF40B-204ENST00000527253 POLA1P09884 1462 aaPredicted RBP18.81■□□□□ 0.6
PRPF40B-204ENST00000527253 TARBP1Q13395 1621 aaKnown RBP18.81■□□□□ 0.6
PRPF40B-204ENST00000527253 AQRO60306 1485 aaKnown RBP eCLIP18.77■□□□□ 0.6
PRPF40B-204ENST00000527253 RAD54L2Q9Y4B4 1467 aa18.77■□□□□ 0.6
PRPF40B-204ENST00000527253 EIF4G3O43432 1585 aaKnown RBP18.76■□□□□ 0.59
PRPF40B-204ENST00000527253 CUX1P39880 1505 aa18.76■□□□□ 0.59
PRPF40B-204ENST00000527253 SOGA1O94964 1423 aa18.74■□□□□ 0.59
PRPF40B-204ENST00000527253 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
PRPF40B-204ENST00000527253 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
PRPF40B-204ENST00000527253 TRIM41Q8WV44 630 aa18.67■□□□□ 0.58
PRPF40B-204ENST00000527253 CHD1O14646 1710 aa18.58■□□□□ 0.57
PRPF40B-204ENST00000527253 FBLN2P98095 1184 aa18.58■□□□□ 0.56
PRPF40B-204ENST00000527253 WDR97A6NE52 1622 aa18.56■□□□□ 0.56
PRPF40B-204ENST00000527253 SNAPC4Q5SXM2 1469 aa18.55■□□□□ 0.56
PRPF40B-204ENST00000527253 RIMBP3CA6NJZ7 1639 aa18.54■□□□□ 0.56
PRPF40B-204ENST00000527253 RIMBP3BA6NNM3 1639 aa18.54■□□□□ 0.56
PRPF40B-204ENST00000527253 RIMBP3Q9UFD9 1639 aa18.54■□□□□ 0.56
PRPF40B-204ENST00000527253 GRIN2BQ13224 1484 aa18.52■□□□□ 0.56
PRPF40B-204ENST00000527253 ABCA10Q8WWZ4 1543 aa18.52■□□□□ 0.56
PRPF40B-204ENST00000527253 ARHGEF11O15085 1522 aa18.51■□□□□ 0.55
PRPF40B-204ENST00000527253 WRNQ14191 1432 aaPredicted RBP eCLIP18.5■□□□□ 0.55
PRPF40B-204ENST00000527253 GAPVD1Q14C86 1478 aa18.5■□□□□ 0.55
PRPF40B-204ENST00000527253 SYNJ1O43426 1573 aa18.5■□□□□ 0.55
PRPF40B-204ENST00000527253 TOP2BQ02880 1626 aa18.49■□□□□ 0.55
PRPF40B-204ENST00000527253 MAGI1Q96QZ7 1491 aaPredicted RBP18.48■□□□□ 0.55
PRPF40B-204ENST00000527253 BIVM-ERCC5R4GMW8 1640 aa18.48■□□□□ 0.55
PRPF40B-204ENST00000527253 CHMP7Q8WUX9 453 aaPredicted RBP18.47■□□□□ 0.55
PRPF40B-204ENST00000527253 ABCA5Q8WWZ7 1642 aa18.46■□□□□ 0.55
PRPF40B-204ENST00000527253 SYNJ2O15056 1496 aa18.44■□□□□ 0.54
PRPF40B-204ENST00000527253 PBRM1Q86U86 1689 aa18.44■□□□□ 0.54
PRPF40B-204ENST00000527253 CLASP1Q7Z460 1538 aa18.4■□□□□ 0.54
PRPF40B-204ENST00000527253 CYB5RLQ6IPT4 315 aa18.39■□□□□ 0.53
PRPF40B-204ENST00000527253 ARAP1Q96P48 1450 aa18.36■□□□□ 0.53
PRPF40B-204ENST00000527253 ADAMTS12P58397 1594 aa18.3■□□□□ 0.52
PRPF40B-204ENST00000527253 GRIN2AQ12879 1464 aa18.29■□□□□ 0.52
PRPF40B-204ENST00000527253 FHAD1B1AJZ9 1412 aa18.27■□□□□ 0.52
PRPF40B-204ENST00000527253 ERICH3Q5RHP9 1530 aa18.27■□□□□ 0.51
PRPF40B-204ENST00000527253 NUP160Q12769 1436 aa18.24■□□□□ 0.51
PRPF40B-204ENST00000527253 CEP170Q5SW79 1584 aa18.23■□□□□ 0.51
PRPF40B-204ENST00000527253 ERCC6L2Q5T890 1561 aa18.17■□□□□ 0.5
PRPF40B-204ENST00000527253 IGF1RP08069 1367 aa18.17■□□□□ 0.5
PRPF40B-204ENST00000527253 KIF27Q86VH2 1401 aa18.13■□□□□ 0.49
PRPF40B-204ENST00000527253 SHROOM2Q13796 1616 aa18.12■□□□□ 0.49
PRPF40B-204ENST00000527253 TRHP20396 242 aaPredicted RBP18.07■□□□□ 0.48
PRPF40B-204ENST00000527253 JPH4Q96JJ6 628 aa18.07■□□□□ 0.48
PRPF40B-204ENST00000527253 PRG4Q92954 1404 aaPredicted RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms