RNA–Protein interactions for RNA: ENST00000527237.1

TRIM3-205, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 339 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-205ENST00000527237 NISCHQ9Y2I1 1504 aa44.74■■■■■ 4.75
TRIM3-205ENST00000527237 CCDC180Q9P1Z9 1646 aa40.02■■■■■ 4
TRIM3-205ENST00000527237 ABCC9O60706 1549 aa39.21■■■■□ 3.87
TRIM3-205ENST00000527237 RB1CC1Q8TDY2 1594 aa37.63■■■■□ 3.61
TRIM3-205ENST00000527237 NACADO15069 1562 aa37.51■■■■□ 3.59
TRIM3-205ENST00000527237 ZCCHC6Q5VYS8 1495 aaKnown RBP37.27■■■■□ 3.56
TRIM3-205ENST00000527237 DCAF8L2P0C7V8 631 aa37.27■■■■□ 3.56
TRIM3-205ENST00000527237 MYO15BQ96JP2 1530 aa37.16■■■■□ 3.54
TRIM3-205ENST00000527237 UNC13AQ9UPW8 1703 aa37.12■■■■□ 3.53
TRIM3-205ENST00000527237 DCAF1Q9Y4B6 1507 aa36.96■■■■□ 3.51
TRIM3-205ENST00000527237 BICRAQ9NZM4 1560 aa36.61■■■■□ 3.45
TRIM3-205ENST00000527237 SCRIBQ14160 1630 aa36.51■■■■□ 3.43
TRIM3-205ENST00000527237 PABPN1Q86U42 306 aaKnown RBP eCLIP36.5■■■■□ 3.43
TRIM3-205ENST00000527237 DNAJC5BQ9UF47 199 aa36.08■■■■□ 3.37
TRIM3-205ENST00000527237 SHROOM4Q9ULL8 1493 aa36.01■■■■□ 3.36
TRIM3-205ENST00000527237 EIF4G1Q04637 1599 aaKnown RBP35.59■■■■□ 3.29
TRIM3-205ENST00000527237 CC2D2AQ9P2K1 1620 aa35.54■■■■□ 3.28
TRIM3-205ENST00000527237 CECR2Q9BXF3 1484 aa35.2■■■■□ 3.23
TRIM3-205ENST00000527237 SMARCA4P51532 1647 aa34.87■■■■□ 3.17
TRIM3-205ENST00000527237 BAZ1AQ9NRL2 1556 aaPredicted RBP34.69■■■■□ 3.14
TRIM3-205ENST00000527237 ATAD2BQ9ULI0 1458 aa34.58■■■■□ 3.13
TRIM3-205ENST00000527237 SMARCA2P51531 1590 aa34.55■■■■□ 3.12
TRIM3-205ENST00000527237 MROH2BQ7Z745 1585 aa34.53■■■■□ 3.12
TRIM3-205ENST00000527237 NCAPD3P42695 1498 aa34.53■■■■□ 3.12
TRIM3-205ENST00000527237 HMGXB3Q12766 1538 aa34.47■■■■□ 3.11
TRIM3-205ENST00000527237 PEG3Q9GZU2 1588 aa34.46■■■■□ 3.11
TRIM3-205ENST00000527237 BAZ1BQ9UIG0 1483 aaKnown RBP34.31■■■■□ 3.08
TRIM3-205ENST00000527237 WIZO95785 1651 aa34.26■■■■□ 3.08
TRIM3-205ENST00000527237 RSF1Q96T23 1441 aaPredicted RBP33.96■■■■□ 3.03
TRIM3-205ENST00000527237 NESP48681 1621 aa33.93■■■■□ 3.02
TRIM3-205ENST00000527237 TOP2AP11388 1531 aaKnown RBP33.78■■■■□ 3
TRIM3-205ENST00000527237 LAMC3Q9Y6N6 1575 aa33.77■■■■□ 3
TRIM3-205ENST00000527237 ERCC6Q03468 1493 aa33.75■■■□□ 2.99
TRIM3-205ENST00000527237 KIF21AQ7Z4S6 1674 aa33.69■■■□□ 2.98
TRIM3-205ENST00000527237 THOC2Q8NI27 1593 aaKnown RBP33.55■■■□□ 2.96
TRIM3-205ENST00000527237 CADPSQ9ULU8 1353 aa33.48■■■□□ 2.95
TRIM3-205ENST00000527237 CUX2O14529 1486 aa33.44■■■□□ 2.94
TRIM3-205ENST00000527237 PRDM2Q13029 1718 aa33.41■■■□□ 2.94
TRIM3-205ENST00000527237 PDS5BQ9NTI5 1447 aa33.39■■■□□ 2.94
TRIM3-205ENST00000527237 CCDC88BA6NC98 1476 aa33.31■■■□□ 2.92
TRIM3-205ENST00000527237 CFTRP13569 1480 aa33.31■■■□□ 2.92
TRIM3-205ENST00000527237 FANCD2Q9BXW9 1451 aa33.2■■■□□ 2.91
TRIM3-205ENST00000527237 CEP164Q9UPV0 1460 aa33.19■■■□□ 2.9
TRIM3-205ENST00000527237 MRC2Q9UBG0 1479 aa33.18■■■□□ 2.9
TRIM3-205ENST00000527237 WDR62O43379 1518 aa33.14■■■□□ 2.9
TRIM3-205ENST00000527237 URB2Q14146 1524 aaKnown RBP32.95■■■□□ 2.87
TRIM3-205ENST00000527237 SUPT5HO00267 1087 aaKnown RBP32.89■■■□□ 2.86
TRIM3-205ENST00000527237 TOPBP1Q92547 1522 aa32.69■■■□□ 2.82
TRIM3-205ENST00000527237 DNMBPQ6XZF7 1577 aa32.67■■■□□ 2.82
TRIM3-205ENST00000527237 ABCC8Q09428 1581 aa32.53■■■□□ 2.8
TRIM3-205ENST00000527237 DNAJC5Q9H3Z4 198 aa32.51■■■□□ 2.79
TRIM3-205ENST00000527237 IFT140Q96RY7 1462 aa32.45■■■□□ 2.79
TRIM3-205ENST00000527237 TARBP1Q13395 1621 aaKnown RBP32.44■■■□□ 2.78
TRIM3-205ENST00000527237 CUX1P39880 1505 aa32.42■■■□□ 2.78
TRIM3-205ENST00000527237 ZNF608Q9ULD9 1512 aaPredicted RBP32.42■■■□□ 2.78
TRIM3-205ENST00000527237 EIF4G3O43432 1585 aaKnown RBP32.4■■■□□ 2.78
TRIM3-205ENST00000527237 POLA1P09884 1462 aaPredicted RBP32.39■■■□□ 2.78
TRIM3-205ENST00000527237 FGD5Q6ZNL6 1462 aa32.31■■■□□ 2.76
TRIM3-205ENST00000527237 RAD54L2Q9Y4B4 1467 aa32.26■■■□□ 2.75
TRIM3-205ENST00000527237 WDR97A6NE52 1622 aa32.26■■■□□ 2.75
TRIM3-205ENST00000527237 BIVM-ERCC5R4GMW8 1640 aa32.17■■■□□ 2.74
TRIM3-205ENST00000527237 SOGA1O94964 1423 aa32.15■■■□□ 2.74
TRIM3-205ENST00000527237 AQRO60306 1485 aaKnown RBP eCLIP32.15■■■□□ 2.74
TRIM3-205ENST00000527237 SYNJ1O43426 1573 aa32.15■■■□□ 2.74
TRIM3-205ENST00000527237 CHD1O14646 1710 aa32.12■■■□□ 2.73
TRIM3-205ENST00000527237 TOP2BQ02880 1626 aa32.09■■■□□ 2.73
TRIM3-205ENST00000527237 PBRM1Q86U86 1689 aa32.05■■■□□ 2.72
TRIM3-205ENST00000527237 WRNQ14191 1432 aaPredicted RBP eCLIP32.02■■■□□ 2.72
TRIM3-205ENST00000527237 TDRD9Q8NDG6 1382 aaKnown RBP32.01■■■□□ 2.71
TRIM3-205ENST00000527237 ABCA5Q8WWZ7 1642 aa31.97■■■□□ 2.71
TRIM3-205ENST00000527237 ABCA10Q8WWZ4 1543 aa31.94■■■□□ 2.7
TRIM3-205ENST00000527237 SNAPC4Q5SXM2 1469 aa31.91■■■□□ 2.7
TRIM3-205ENST00000527237 OSCARQ8IYS5 282 aa31.86■■■□□ 2.69
TRIM3-205ENST00000527237 GRIN2BQ13224 1484 aa31.83■■■□□ 2.69
TRIM3-205ENST00000527237 GAPVD1Q14C86 1478 aa31.83■■■□□ 2.69
TRIM3-205ENST00000527237 MAGI1Q96QZ7 1491 aaPredicted RBP31.79■■■□□ 2.68
TRIM3-205ENST00000527237 RIMBP3CA6NJZ7 1639 aa31.71■■■□□ 2.67
TRIM3-205ENST00000527237 RIMBP3BA6NNM3 1639 aa31.71■■■□□ 2.67
TRIM3-205ENST00000527237 RIMBP3Q9UFD9 1639 aa31.71■■■□□ 2.67
TRIM3-205ENST00000527237 FBLN2P98095 1184 aa31.68■■■□□ 2.66
TRIM3-205ENST00000527237 ADAMTS12P58397 1594 aa31.68■■■□□ 2.66
TRIM3-205ENST00000527237 SYNJ2O15056 1496 aa31.67■■■□□ 2.66
TRIM3-205ENST00000527237 CLASP1Q7Z460 1538 aa31.61■■■□□ 2.65
TRIM3-205ENST00000527237 ARHGEF11O15085 1522 aa31.59■■■□□ 2.65
TRIM3-205ENST00000527237 ERICH3Q5RHP9 1530 aa31.55■■■□□ 2.64
TRIM3-205ENST00000527237 CHMP7Q8WUX9 453 aaPredicted RBP31.53■■■□□ 2.64
TRIM3-205ENST00000527237 GRIN2AQ12879 1464 aa31.48■■■□□ 2.63
TRIM3-205ENST00000527237 CEP170Q5SW79 1584 aa31.44■■■□□ 2.62
TRIM3-205ENST00000527237 TRIM41Q8WV44 630 aa31.44■■■□□ 2.62
TRIM3-205ENST00000527237 FHAD1B1AJZ9 1412 aa31.41■■■□□ 2.62
TRIM3-205ENST00000527237 ARAP1Q96P48 1450 aa31.34■■■□□ 2.61
TRIM3-205ENST00000527237 CUL7Q14999 1698 aa31.34■■■□□ 2.61
TRIM3-205ENST00000527237 NUP160Q12769 1436 aa31.32■■■□□ 2.6
TRIM3-205ENST00000527237 KIF27Q86VH2 1401 aa31.32■■■□□ 2.6
TRIM3-205ENST00000527237 SHROOM2Q13796 1616 aa31.25■■■□□ 2.59
TRIM3-205ENST00000527237 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
TRIM3-205ENST00000527237 ERCC6L2Q5T890 1561 aa31.22■■■□□ 2.59
TRIM3-205ENST00000527237 IGF1RP08069 1367 aa31.19■■■□□ 2.58
TRIM3-205ENST00000527237 CYB5RLQ6IPT4 315 aa31.13■■■□□ 2.57
TRIM3-205ENST00000527237 CARMIL1Q5VZK9 1371 aa31.01■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms