RNA–Protein interactions for RNA: ENST00000527133.2

CLNS1A-207, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 3

Gene CLNS1A, Length 667 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-207ENST00000527133 NISCHQ9Y2I1 1504 aa33.12■■■□□ 2.89
CLNS1A-207ENST00000527133 ABCC9O60706 1549 aa30.27■■■□□ 2.44
CLNS1A-207ENST00000527133 CCDC180Q9P1Z9 1646 aa29.85■■■□□ 2.37
CLNS1A-207ENST00000527133 DNAJC5BQ9UF47 199 aa28.72■■■□□ 2.19
CLNS1A-207ENST00000527133 RB1CC1Q8TDY2 1594 aa28.61■■■□□ 2.17
CLNS1A-207ENST00000527133 NACADO15069 1562 aa28.32■■■□□ 2.12
CLNS1A-207ENST00000527133 DCAF8L2P0C7V8 631 aa28.17■■■□□ 2.1
CLNS1A-207ENST00000527133 PABPN1Q86U42 306 aaKnown RBP eCLIP28.14■■■□□ 2.1
CLNS1A-207ENST00000527133 UNC13AQ9UPW8 1703 aa27.95■■■□□ 2.07
CLNS1A-207ENST00000527133 BICRAQ9NZM4 1560 aa27.8■■■□□ 2.04
CLNS1A-207ENST00000527133 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
CLNS1A-207ENST00000527133 ZCCHC6Q5VYS8 1495 aaKnown RBP27.37■■□□□ 1.97
CLNS1A-207ENST00000527133 SHROOM4Q9ULL8 1493 aa27.36■■□□□ 1.97
CLNS1A-207ENST00000527133 CC2D2AQ9P2K1 1620 aa27.3■■□□□ 1.96
CLNS1A-207ENST00000527133 CECR2Q9BXF3 1484 aa27.3■■□□□ 1.96
CLNS1A-207ENST00000527133 DCAF1Q9Y4B6 1507 aa27.3■■□□□ 1.96
CLNS1A-207ENST00000527133 SCRIBQ14160 1630 aa27.23■■□□□ 1.95
CLNS1A-207ENST00000527133 EIF4G1Q04637 1599 aaKnown RBP27.15■■□□□ 1.94
CLNS1A-207ENST00000527133 DNAJC5Q9H3Z4 198 aa26.62■■□□□ 1.85
CLNS1A-207ENST00000527133 CUX2O14529 1486 aa26.2■■□□□ 1.78
CLNS1A-207ENST00000527133 ERCC6Q03468 1493 aa26.17■■□□□ 1.78
CLNS1A-207ENST00000527133 NCAPD3P42695 1498 aa26.15■■□□□ 1.78
CLNS1A-207ENST00000527133 ATAD2BQ9ULI0 1458 aa26.04■■□□□ 1.76
CLNS1A-207ENST00000527133 SMARCA2P51531 1590 aa25.93■■□□□ 1.74
CLNS1A-207ENST00000527133 HMGXB3Q12766 1538 aa25.92■■□□□ 1.74
CLNS1A-207ENST00000527133 SMARCA4P51532 1647 aa25.91■■□□□ 1.74
CLNS1A-207ENST00000527133 NESP48681 1621 aa25.9■■□□□ 1.74
CLNS1A-207ENST00000527133 BAZ1BQ9UIG0 1483 aaKnown RBP25.78■■□□□ 1.72
CLNS1A-207ENST00000527133 BAZ1AQ9NRL2 1556 aaPredicted RBP25.73■■□□□ 1.71
CLNS1A-207ENST00000527133 THOC2Q8NI27 1593 aaKnown RBP25.68■■□□□ 1.7
CLNS1A-207ENST00000527133 PEG3Q9GZU2 1588 aa25.64■■□□□ 1.69
CLNS1A-207ENST00000527133 LAMC3Q9Y6N6 1575 aa25.62■■□□□ 1.69
CLNS1A-207ENST00000527133 MROH2BQ7Z745 1585 aa25.53■■□□□ 1.68
CLNS1A-207ENST00000527133 KIF21AQ7Z4S6 1674 aa25.52■■□□□ 1.68
CLNS1A-207ENST00000527133 PDS5BQ9NTI5 1447 aa25.5■■□□□ 1.67
CLNS1A-207ENST00000527133 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
CLNS1A-207ENST00000527133 CADPSQ9ULU8 1353 aa25.35■■□□□ 1.65
CLNS1A-207ENST00000527133 MRC2Q9UBG0 1479 aa25.31■■□□□ 1.64
CLNS1A-207ENST00000527133 WDR62O43379 1518 aa25.25■■□□□ 1.63
CLNS1A-207ENST00000527133 WIZO95785 1651 aa25.2■■□□□ 1.63
CLNS1A-207ENST00000527133 CEP164Q9UPV0 1460 aa25.15■■□□□ 1.62
CLNS1A-207ENST00000527133 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
CLNS1A-207ENST00000527133 CFTRP13569 1480 aa24.98■■□□□ 1.59
CLNS1A-207ENST00000527133 OSCARQ8IYS5 282 aa24.96■■□□□ 1.59
CLNS1A-207ENST00000527133 URB2Q14146 1524 aaKnown RBP24.9■■□□□ 1.58
CLNS1A-207ENST00000527133 RSF1Q96T23 1441 aaPredicted RBP24.86■■□□□ 1.57
CLNS1A-207ENST00000527133 TOP2AP11388 1531 aaKnown RBP24.85■■□□□ 1.57
CLNS1A-207ENST00000527133 RIMBP3CA6NJZ7 1639 aa24.68■■□□□ 1.54
CLNS1A-207ENST00000527133 RIMBP3BA6NNM3 1639 aa24.68■■□□□ 1.54
CLNS1A-207ENST00000527133 RIMBP3Q9UFD9 1639 aa24.68■■□□□ 1.54
CLNS1A-207ENST00000527133 PRDM2Q13029 1718 aa24.67■■□□□ 1.54
CLNS1A-207ENST00000527133 ZNF608Q9ULD9 1512 aaPredicted RBP24.66■■□□□ 1.54
CLNS1A-207ENST00000527133 IFT140Q96RY7 1462 aa24.64■■□□□ 1.54
CLNS1A-207ENST00000527133 CCDC88BA6NC98 1476 aa24.58■■□□□ 1.53
CLNS1A-207ENST00000527133 ARHGEF11O15085 1522 aa24.56■■□□□ 1.52
CLNS1A-207ENST00000527133 TOPBP1Q92547 1522 aa24.56■■□□□ 1.52
CLNS1A-207ENST00000527133 EIF4G3O43432 1585 aaKnown RBP24.5■■□□□ 1.51
CLNS1A-207ENST00000527133 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
CLNS1A-207ENST00000527133 DNMBPQ6XZF7 1577 aa24.43■■□□□ 1.5
CLNS1A-207ENST00000527133 CYB5RLQ6IPT4 315 aa24.43■■□□□ 1.5
CLNS1A-207ENST00000527133 AQRO60306 1485 aaKnown RBP eCLIP24.39■■□□□ 1.57e-8■■■■□ 26.4
CLNS1A-207ENST00000527133 CHD1O14646 1710 aa24.37■■□□□ 1.49
CLNS1A-207ENST00000527133 TARBP1Q13395 1621 aaKnown RBP24.36■■□□□ 1.49
CLNS1A-207ENST00000527133 FBLN2P98095 1184 aa24.33■■□□□ 1.49
CLNS1A-207ENST00000527133 ARAP1Q96P48 1450 aa24.31■■□□□ 1.48
CLNS1A-207ENST00000527133 TRHP20396 242 aaPredicted RBP24.29■■□□□ 1.48
CLNS1A-207ENST00000527133 POLA1P09884 1462 aaPredicted RBP24.29■■□□□ 1.48
CLNS1A-207ENST00000527133 RAD54L2Q9Y4B4 1467 aa24.22■■□□□ 1.47
CLNS1A-207ENST00000527133 TDRD9Q8NDG6 1382 aaKnown RBP24.19■■□□□ 1.46
CLNS1A-207ENST00000527133 SOGA1O94964 1423 aa24.18■■□□□ 1.46
CLNS1A-207ENST00000527133 SNAPC4Q5SXM2 1469 aa24.13■■□□□ 1.45
CLNS1A-207ENST00000527133 CLASP1Q7Z460 1538 aa24.09■■□□□ 1.45
CLNS1A-207ENST00000527133 FGD5Q6ZNL6 1462 aa24.08■■□□□ 1.45
CLNS1A-207ENST00000527133 CHMP7Q8WUX9 453 aaPredicted RBP24.07■■□□□ 1.44
CLNS1A-207ENST00000527133 WDR97A6NE52 1622 aa24.06■■□□□ 1.44
CLNS1A-207ENST00000527133 SYNJ1O43426 1573 aa24.03■■□□□ 1.44
CLNS1A-207ENST00000527133 MAGI1Q96QZ7 1491 aaPredicted RBP24.03■■□□□ 1.44
CLNS1A-207ENST00000527133 CUX1P39880 1505 aa24.01■■□□□ 1.43
CLNS1A-207ENST00000527133 GRIN2BQ13224 1484 aa24■■□□□ 1.43
CLNS1A-207ENST00000527133 SYNJ2O15056 1496 aa23.96■■□□□ 1.43
CLNS1A-207ENST00000527133 GAPVD1Q14C86 1478 aa23.87■■□□□ 1.41
CLNS1A-207ENST00000527133 PBRM1Q86U86 1689 aa23.87■■□□□ 1.41
CLNS1A-207ENST00000527133 AEBP2Q6ZN18 517 aaPredicted RBP23.85■■□□□ 1.41
CLNS1A-207ENST00000527133 ABCA10Q8WWZ4 1543 aa23.78■■□□□ 1.4
CLNS1A-207ENST00000527133 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
CLNS1A-207ENST00000527133 ERCC6L2Q5T890 1561 aa23.7■■□□□ 1.38
CLNS1A-207ENST00000527133 GRIN2AQ12879 1464 aa23.69■■□□□ 1.38
CLNS1A-207ENST00000527133 ADAMTS12P58397 1594 aa23.63■■□□□ 1.37
CLNS1A-207ENST00000527133 CEP170Q5SW79 1584 aa23.63■■□□□ 1.37
CLNS1A-207ENST00000527133 NUP160Q12769 1436 aa23.62■■□□□ 1.37
CLNS1A-207ENST00000527133 WRNQ14191 1432 aaPredicted RBP eCLIP23.62■■□□□ 1.37
CLNS1A-207ENST00000527133 FHAD1B1AJZ9 1412 aa23.55■■□□□ 1.36
CLNS1A-207ENST00000527133 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
CLNS1A-207ENST00000527133 SHROOM2Q13796 1616 aa23.54■■□□□ 1.36
CLNS1A-207ENST00000527133 TOP2BQ02880 1626 aa23.51■■□□□ 1.35
CLNS1A-207ENST00000527133 BIVM-ERCC5R4GMW8 1640 aa23.5■■□□□ 1.35
CLNS1A-207ENST00000527133 ERICH3Q5RHP9 1530 aa23.47■■□□□ 1.35
CLNS1A-207ENST00000527133 PRG4Q92954 1404 aaPredicted RBP23.44■■□□□ 1.34
CLNS1A-207ENST00000527133 KIF13AQ9H1H9 1805 aa23.43■■□□□ 1.34
CLNS1A-207ENST00000527133 JPH4Q96JJ6 628 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms