RNA–Protein interactions for RNA: ENST00000527064.1

NXF1-204, Transcript of nuclear RNA export factor 1, humanhuman

TSL 2

Gene NXF1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-204ENST00000527064 NISCHQ9Y2I1 1504 aa34.98■■■■□ 3.19
NXF1-204ENST00000527064 CCDC180Q9P1Z9 1646 aa31.16■■■□□ 2.58
NXF1-204ENST00000527064 ABCC9O60706 1549 aa30.42■■■□□ 2.46
NXF1-204ENST00000527064 RB1CC1Q8TDY2 1594 aa29.34■■■□□ 2.29
NXF1-204ENST00000527064 NACADO15069 1562 aa29.3■■■□□ 2.28
NXF1-204ENST00000527064 DCAF8L2P0C7V8 631 aa29.17■■■□□ 2.26
NXF1-204ENST00000527064 ZCCHC6Q5VYS8 1495 aaKnown RBP29.16■■■□□ 2.26
NXF1-204ENST00000527064 MYO15BQ96JP2 1530 aa29.13■■■□□ 2.25
NXF1-204ENST00000527064 DCAF1Q9Y4B6 1507 aa28.99■■■□□ 2.23
NXF1-204ENST00000527064 UNC13AQ9UPW8 1703 aa28.6■■■□□ 2.17
NXF1-204ENST00000527064 SCRIBQ14160 1630 aa28.39■■■□□ 2.13
NXF1-204ENST00000527064 PABPN1Q86U42 306 aaKnown RBP eCLIP28.38■■■□□ 2.13
NXF1-204ENST00000527064 BICRAQ9NZM4 1560 aa28.37■■■□□ 2.13
NXF1-204ENST00000527064 SHROOM4Q9ULL8 1493 aa28.21■■■□□ 2.11
NXF1-204ENST00000527064 DNAJC5BQ9UF47 199 aa27.83■■■□□ 2.05
NXF1-204ENST00000527064 EIF4G1Q04637 1599 aaKnown RBP27.67■■■□□ 2.02
NXF1-204ENST00000527064 CC2D2AQ9P2K1 1620 aa27.54■■■□□ 2
NXF1-204ENST00000527064 CECR2Q9BXF3 1484 aa27.37■■□□□ 1.97
NXF1-204ENST00000527064 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
NXF1-204ENST00000527064 BAZ1AQ9NRL2 1556 aaPredicted RBP27.15■■□□□ 1.94
NXF1-204ENST00000527064 SMARCA2P51531 1590 aa27.02■■□□□ 1.92
NXF1-204ENST00000527064 ATAD2BQ9ULI0 1458 aa27■■□□□ 1.91
NXF1-204ENST00000527064 NCAPD3P42695 1498 aa27■■□□□ 1.91
NXF1-204ENST00000527064 MROH2BQ7Z745 1585 aa26.92■■□□□ 1.9
NXF1-204ENST00000527064 PEG3Q9GZU2 1588 aa26.92■■□□□ 1.9
NXF1-204ENST00000527064 HMGXB3Q12766 1538 aa26.9■■□□□ 1.9
NXF1-204ENST00000527064 BAZ1BQ9UIG0 1483 aaKnown RBP26.81■■□□□ 1.88
NXF1-204ENST00000527064 WIZO95785 1651 aa26.64■■□□□ 1.86
NXF1-204ENST00000527064 RSF1Q96T23 1441 aaPredicted RBP26.62■■□□□ 1.85
NXF1-204ENST00000527064 TOP2AP11388 1531 aaKnown RBP26.42■■□□□ 1.82
NXF1-204ENST00000527064 LAMC3Q9Y6N6 1575 aa26.32■■□□□ 1.8
NXF1-204ENST00000527064 NESP48681 1621 aa26.3■■□□□ 1.8
NXF1-204ENST00000527064 ERCC6Q03468 1493 aa26.29■■□□□ 1.8
NXF1-204ENST00000527064 CADPSQ9ULU8 1353 aa26.2■■□□□ 1.79
NXF1-204ENST00000527064 PDS5BQ9NTI5 1447 aa26.14■■□□□ 1.78
NXF1-204ENST00000527064 CCDC88BA6NC98 1476 aa26.05■■□□□ 1.76
NXF1-204ENST00000527064 CFTRP13569 1480 aa26.05■■□□□ 1.76
NXF1-204ENST00000527064 KIF21AQ7Z4S6 1674 aa26.03■■□□□ 1.76
NXF1-204ENST00000527064 CUX2O14529 1486 aa26.03■■□□□ 1.76
NXF1-204ENST00000527064 THOC2Q8NI27 1593 aaKnown RBP25.97■■□□□ 1.75
NXF1-204ENST00000527064 FANCD2Q9BXW9 1451 aa25.91■■□□□ 1.74
NXF1-204ENST00000527064 CEP164Q9UPV0 1460 aa25.91■■□□□ 1.74
NXF1-204ENST00000527064 SUPT5HO00267 1087 aaKnown RBP25.9■■□□□ 1.74
NXF1-204ENST00000527064 PRDM2Q13029 1718 aa25.9■■□□□ 1.74
NXF1-204ENST00000527064 MRC2Q9UBG0 1479 aa25.87■■□□□ 1.73
NXF1-204ENST00000527064 WDR62O43379 1518 aa25.78■■□□□ 1.72
NXF1-204ENST00000527064 URB2Q14146 1524 aaKnown RBP25.63■■□□□ 1.69
NXF1-204ENST00000527064 ABCC8Q09428 1581 aa25.54■■□□□ 1.68
NXF1-204ENST00000527064 DNMBPQ6XZF7 1577 aa25.49■■□□□ 1.67
NXF1-204ENST00000527064 TOPBP1Q92547 1522 aa25.49■■□□□ 1.67
NXF1-204ENST00000527064 IFT140Q96RY7 1462 aa25.36■■□□□ 1.65
NXF1-204ENST00000527064 CUX1P39880 1505 aa25.28■■□□□ 1.64
NXF1-204ENST00000527064 POLA1P09884 1462 aaPredicted RBP25.28■■□□□ 1.64
NXF1-204ENST00000527064 TARBP1Q13395 1621 aaKnown RBP25.21■■□□□ 1.63
NXF1-204ENST00000527064 FGD5Q6ZNL6 1462 aa25.21■■□□□ 1.63
NXF1-204ENST00000527064 ZNF608Q9ULD9 1512 aaPredicted RBP25.18■■□□□ 1.62
NXF1-204ENST00000527064 SOGA1O94964 1423 aa25.16■■□□□ 1.62
NXF1-204ENST00000527064 DNAJC5Q9H3Z4 198 aa25.15■■□□□ 1.62
NXF1-204ENST00000527064 EIF4G3O43432 1585 aaKnown RBP25.14■■□□□ 1.62
NXF1-204ENST00000527064 WRNQ14191 1432 aaPredicted RBP eCLIP25.13■■□□□ 1.61
NXF1-204ENST00000527064 RAD54L2Q9Y4B4 1467 aa25.13■■□□□ 1.61
NXF1-204ENST00000527064 WDR97A6NE52 1622 aa25.1■■□□□ 1.61
NXF1-204ENST00000527064 TOP2BQ02880 1626 aa25.09■■□□□ 1.61
NXF1-204ENST00000527064 BIVM-ERCC5R4GMW8 1640 aa25.09■■□□□ 1.61
NXF1-204ENST00000527064 SYNJ1O43426 1573 aa25.05■■□□□ 1.6
NXF1-204ENST00000527064 AQRO60306 1485 aaKnown RBP eCLIP25.04■■□□□ 1.65e-7■■■■■ 28.2
NXF1-204ENST00000527064 TDRD9Q8NDG6 1382 aaKnown RBP24.99■■□□□ 1.59
NXF1-204ENST00000527064 ABCA10Q8WWZ4 1543 aa24.99■■□□□ 1.59
NXF1-204ENST00000527064 GRIN2BQ13224 1484 aa24.89■■□□□ 1.58
NXF1-204ENST00000527064 ABCA5Q8WWZ7 1642 aa24.89■■□□□ 1.57
NXF1-204ENST00000527064 GAPVD1Q14C86 1478 aa24.89■■□□□ 1.57
NXF1-204ENST00000527064 OSCARQ8IYS5 282 aa24.88■■□□□ 1.57
NXF1-204ENST00000527064 PBRM1Q86U86 1689 aa24.85■■□□□ 1.57
NXF1-204ENST00000527064 SNAPC4Q5SXM2 1469 aa24.85■■□□□ 1.57
NXF1-204ENST00000527064 MAGI1Q96QZ7 1491 aaPredicted RBP24.85■■□□□ 1.57
NXF1-204ENST00000527064 CHD1O14646 1710 aa24.81■■□□□ 1.56
NXF1-204ENST00000527064 FBLN2P98095 1184 aa24.75■■□□□ 1.55
NXF1-204ENST00000527064 SYNJ2O15056 1496 aa24.74■■□□□ 1.55
NXF1-204ENST00000527064 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
NXF1-204ENST00000527064 CHMP7Q8WUX9 453 aaPredicted RBP24.7■■□□□ 1.54
NXF1-204ENST00000527064 ADAMTS12P58397 1594 aa24.67■■□□□ 1.54
NXF1-204ENST00000527064 KIF27Q86VH2 1401 aa24.63■■□□□ 1.53
NXF1-204ENST00000527064 FHAD1B1AJZ9 1412 aa24.61■■□□□ 1.53
NXF1-204ENST00000527064 GRIN2AQ12879 1464 aa24.58■■□□□ 1.52
NXF1-204ENST00000527064 CLASP1Q7Z460 1538 aa24.55■■□□□ 1.52
NXF1-204ENST00000527064 ARHGEF11O15085 1522 aa24.51■■□□□ 1.51
NXF1-204ENST00000527064 TRIM41Q8WV44 630 aa24.5■■□□□ 1.51
NXF1-204ENST00000527064 RIMBP3CA6NJZ7 1639 aa24.5■■□□□ 1.51
NXF1-204ENST00000527064 RIMBP3BA6NNM3 1639 aa24.5■■□□□ 1.51
NXF1-204ENST00000527064 RIMBP3Q9UFD9 1639 aa24.5■■□□□ 1.51
NXF1-204ENST00000527064 CUL7Q14999 1698 aa24.5■■□□□ 1.51
NXF1-204ENST00000527064 IGF1RP08069 1367 aa24.47■■□□□ 1.51
NXF1-204ENST00000527064 NUP160Q12769 1436 aa24.46■■□□□ 1.51
NXF1-204ENST00000527064 CEP170Q5SW79 1584 aa24.43■■□□□ 1.5
NXF1-204ENST00000527064 CARMIL1Q5VZK9 1371 aa24.35■■□□□ 1.49
NXF1-204ENST00000527064 RUSC2Q8N2Y8 1516 aa24.3■■□□□ 1.48
NXF1-204ENST00000527064 ARAP1Q96P48 1450 aa24.29■■□□□ 1.48
NXF1-204ENST00000527064 SHROOM2Q13796 1616 aa24.28■■□□□ 1.48
NXF1-204ENST00000527064 RAPGEF2Q9Y4G8 1499 aa24.23■■□□□ 1.47
NXF1-204ENST00000527064 KIAA0586Q9BVV6 1533 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms