RNA–Protein interactions for RNA: ENST00000526971.1

PKP3-204, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 532 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-204ENST00000526971 NISCHQ9Y2I1 1504 aa47.49■■■■■ 5.19
PKP3-204ENST00000526971 ABCC9O60706 1549 aa42.87■■■■■ 4.45
PKP3-204ENST00000526971 CCDC180Q9P1Z9 1646 aa42.74■■■■■ 4.43
PKP3-204ENST00000526971 RB1CC1Q8TDY2 1594 aa40.7■■■■■ 4.11
PKP3-204ENST00000526971 DNAJC5BQ9UF47 199 aa40.38■■■■■ 4.05
PKP3-204ENST00000526971 NACADO15069 1562 aa40.38■■■■■ 4.05
PKP3-204ENST00000526971 DCAF8L2P0C7V8 631 aa40■■■■□ 3.99
PKP3-204ENST00000526971 UNC13AQ9UPW8 1703 aa39.98■■■■□ 3.99
PKP3-204ENST00000526971 PABPN1Q86U42 306 aaKnown RBP eCLIP39.83■■■■□ 3.97
PKP3-204ENST00000526971 MYO15BQ96JP2 1530 aa39.75■■■■□ 3.95
PKP3-204ENST00000526971 BICRAQ9NZM4 1560 aa39.63■■■■□ 3.94
PKP3-204ENST00000526971 ZCCHC6Q5VYS8 1495 aaKnown RBP39.35■■■■□ 3.89
PKP3-204ENST00000526971 DCAF1Q9Y4B6 1507 aa39.19■■■■□ 3.86
PKP3-204ENST00000526971 SHROOM4Q9ULL8 1493 aa38.95■■■■□ 3.83
PKP3-204ENST00000526971 SCRIBQ14160 1630 aa38.94■■■■□ 3.82
PKP3-204ENST00000526971 CC2D2AQ9P2K1 1620 aa38.76■■■■□ 3.8
PKP3-204ENST00000526971 EIF4G1Q04637 1599 aaKnown RBP38.62■■■■□ 3.77
PKP3-204ENST00000526971 CECR2Q9BXF3 1484 aa38.61■■■■□ 3.77
PKP3-204ENST00000526971 NCAPD3P42695 1498 aa37.26■■■■□ 3.56
PKP3-204ENST00000526971 ATAD2BQ9ULI0 1458 aa37.16■■■■□ 3.54
PKP3-204ENST00000526971 SMARCA4P51532 1647 aa37.13■■■■□ 3.53
PKP3-204ENST00000526971 DNAJC5Q9H3Z4 198 aa37.11■■■■□ 3.53
PKP3-204ENST00000526971 HMGXB3Q12766 1538 aa37.02■■■■□ 3.52
PKP3-204ENST00000526971 SMARCA2P51531 1590 aa37.02■■■■□ 3.52
PKP3-204ENST00000526971 CUX2O14529 1486 aa36.98■■■■□ 3.51
PKP3-204ENST00000526971 ERCC6Q03468 1493 aa36.96■■■■□ 3.51
PKP3-204ENST00000526971 BAZ1AQ9NRL2 1556 aaPredicted RBP36.85■■■■□ 3.49
PKP3-204ENST00000526971 NESP48681 1621 aa36.82■■■■□ 3.49
PKP3-204ENST00000526971 BAZ1BQ9UIG0 1483 aaKnown RBP36.76■■■■□ 3.48
PKP3-204ENST00000526971 PEG3Q9GZU2 1588 aa36.75■■■■□ 3.47
PKP3-204ENST00000526971 MROH2BQ7Z745 1585 aa36.63■■■■□ 3.45
PKP3-204ENST00000526971 THOC2Q8NI27 1593 aaKnown RBP36.53■■■■□ 3.44
PKP3-204ENST00000526971 LAMC3Q9Y6N6 1575 aa36.48■■■■□ 3.43
PKP3-204ENST00000526971 KIF21AQ7Z4S6 1674 aa36.4■■■■□ 3.42
PKP3-204ENST00000526971 WIZO95785 1651 aa36.22■■■■□ 3.39
PKP3-204ENST00000526971 PDS5BQ9NTI5 1447 aa36.19■■■■□ 3.38
PKP3-204ENST00000526971 CADPSQ9ULU8 1353 aa36.1■■■■□ 3.37
PKP3-204ENST00000526971 MRC2Q9UBG0 1479 aa35.97■■■■□ 3.35
PKP3-204ENST00000526971 WDR62O43379 1518 aa35.93■■■■□ 3.34
PKP3-204ENST00000526971 CEP164Q9UPV0 1460 aa35.78■■■■□ 3.32
PKP3-204ENST00000526971 RSF1Q96T23 1441 aaPredicted RBP35.75■■■■□ 3.31
PKP3-204ENST00000526971 FANCD2Q9BXW9 1451 aa35.73■■■■□ 3.31
PKP3-204ENST00000526971 TOP2AP11388 1531 aaKnown RBP35.69■■■■□ 3.3
PKP3-204ENST00000526971 CFTRP13569 1480 aa35.69■■■■□ 3.3
PKP3-204ENST00000526971 URB2Q14146 1524 aaKnown RBP35.51■■■■□ 3.27
PKP3-204ENST00000526971 PRDM2Q13029 1718 aa35.46■■■■□ 3.27
PKP3-204ENST00000526971 TRIM41Q8WV44 630 aa35.41■■■■□ 3.26
PKP3-204ENST00000526971 CCDC88BA6NC98 1476 aa35.27■■■■□ 3.24
PKP3-204ENST00000526971 OSCARQ8IYS5 282 aa35.15■■■■□ 3.22
PKP3-204ENST00000526971 ZNF608Q9ULD9 1512 aaPredicted RBP35.1■■■■□ 3.21
PKP3-204ENST00000526971 TOPBP1Q92547 1522 aa35.06■■■■□ 3.2
PKP3-204ENST00000526971 IFT140Q96RY7 1462 aa35.05■■■■□ 3.2
PKP3-204ENST00000526971 EIF4G3O43432 1585 aaKnown RBP34.92■■■■□ 3.18
PKP3-204ENST00000526971 DNMBPQ6XZF7 1577 aa34.92■■■■□ 3.18
PKP3-204ENST00000526971 RIMBP3CA6NJZ7 1639 aa34.92■■■■□ 3.18
PKP3-204ENST00000526971 RIMBP3BA6NNM3 1639 aa34.92■■■■□ 3.18
PKP3-204ENST00000526971 RIMBP3Q9UFD9 1639 aa34.92■■■■□ 3.18
PKP3-204ENST00000526971 ABCC8Q09428 1581 aa34.87■■■■□ 3.17
PKP3-204ENST00000526971 TARBP1Q13395 1621 aaKnown RBP34.81■■■■□ 3.16
PKP3-204ENST00000526971 ARHGEF11O15085 1522 aa34.75■■■■□ 3.15
PKP3-204ENST00000526971 CHD1O14646 1710 aa34.73■■■■□ 3.15
PKP3-204ENST00000526971 AQRO60306 1485 aaKnown RBP eCLIP34.71■■■■□ 3.151e-6■■□□□ 12.9
PKP3-204ENST00000526971 POLA1P09884 1462 aaPredicted RBP34.7■■■■□ 3.15
PKP3-204ENST00000526971 RAD54L2Q9Y4B4 1467 aa34.58■■■■□ 3.13
PKP3-204ENST00000526971 SOGA1O94964 1423 aa34.46■■■■□ 3.11
PKP3-204ENST00000526971 FGD5Q6ZNL6 1462 aa34.46■■■■□ 3.11
PKP3-204ENST00000526971 TDRD9Q8NDG6 1382 aaKnown RBP34.44■■■■□ 3.1
PKP3-204ENST00000526971 CUX1P39880 1505 aa34.43■■■■□ 3.1
PKP3-204ENST00000526971 ARAP1Q96P48 1450 aa34.42■■■■□ 3.1
PKP3-204ENST00000526971 FBLN2P98095 1184 aa34.4■■■■□ 3.1
PKP3-204ENST00000526971 CYB5RLQ6IPT4 315 aa34.38■■■■□ 3.09
PKP3-204ENST00000526971 WDR97A6NE52 1622 aa34.37■■■■□ 3.09
PKP3-204ENST00000526971 SNAPC4Q5SXM2 1469 aa34.37■■■■□ 3.09
PKP3-204ENST00000526971 SUPT5HO00267 1087 aaKnown RBP34.34■■■■□ 3.09
PKP3-204ENST00000526971 CLASP1Q7Z460 1538 aa34.29■■■■□ 3.08
PKP3-204ENST00000526971 MAGI1Q96QZ7 1491 aaPredicted RBP34.23■■■■□ 3.07
PKP3-204ENST00000526971 GRIN2BQ13224 1484 aa34.2■■■■□ 3.06
PKP3-204ENST00000526971 PBRM1Q86U86 1689 aa34.19■■■■□ 3.06
PKP3-204ENST00000526971 SYNJ1O43426 1573 aa34.17■■■■□ 3.06
PKP3-204ENST00000526971 SYNJ2O15056 1496 aa34.13■■■■□ 3.05
PKP3-204ENST00000526971 CHMP7Q8WUX9 453 aaPredicted RBP34.11■■■■□ 3.05
PKP3-204ENST00000526971 ABCA5Q8WWZ7 1642 aa34.08■■■■□ 3.05
PKP3-204ENST00000526971 GAPVD1Q14C86 1478 aa34.07■■■■□ 3.04
PKP3-204ENST00000526971 ABCA10Q8WWZ4 1543 aa34.04■■■■□ 3.04
PKP3-204ENST00000526971 TRHP20396 242 aaPredicted RBP34.02■■■■□ 3.04
PKP3-204ENST00000526971 BIVM-ERCC5R4GMW8 1640 aa33.85■■■■□ 3.01
PKP3-204ENST00000526971 ADAMTS12P58397 1594 aa33.82■■■■□ 3
PKP3-204ENST00000526971 TOP2BQ02880 1626 aa33.81■■■■□ 3
PKP3-204ENST00000526971 GRIN2AQ12879 1464 aa33.8■■■■□ 3
PKP3-204ENST00000526971 WRNQ14191 1432 aaPredicted RBP eCLIP33.79■■■■□ 3
PKP3-204ENST00000526971 ERCC6L2Q5T890 1561 aa33.78■■■■□ 3
PKP3-204ENST00000526971 CEP170Q5SW79 1584 aa33.75■■■□□ 2.99
PKP3-204ENST00000526971 NUP160Q12769 1436 aa33.7■■■□□ 2.98
PKP3-204ENST00000526971 SHROOM2Q13796 1616 aa33.63■■■□□ 2.97
PKP3-204ENST00000526971 FHAD1B1AJZ9 1412 aa33.61■■■□□ 2.97
PKP3-204ENST00000526971 ERICH3Q5RHP9 1530 aa33.59■■■□□ 2.97
PKP3-204ENST00000526971 RUSC2Q8N2Y8 1516 aa33.36■■■□□ 2.93
PKP3-204ENST00000526971 PRG4Q92954 1404 aaPredicted RBP33.34■■■□□ 2.93
PKP3-204ENST00000526971 KIF13AQ9H1H9 1805 aa33.32■■■□□ 2.93
PKP3-204ENST00000526971 JPH4Q96JJ6 628 aa33.24■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms