RNA–Protein interactions for RNA: ENST00000526869.1

SMCO4-203, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

TSL 1 (best)

Gene SMCO4, Length 374 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-203ENST00000526869 NISCHQ9Y2I1 1504 aa46.98■■■■■ 5.11
SMCO4-203ENST00000526869 CCDC180Q9P1Z9 1646 aa41.17■■■■■ 4.18
SMCO4-203ENST00000526869 ZCCHC6Q5VYS8 1495 aaKnown RBP39.47■■■■□ 3.91
SMCO4-203ENST00000526869 DCAF1Q9Y4B6 1507 aa38.99■■■■□ 3.83
SMCO4-203ENST00000526869 ABCC9O60706 1549 aa38.78■■■■□ 3.8
SMCO4-203ENST00000526869 MYO15BQ96JP2 1530 aa38.62■■■■□ 3.77
SMCO4-203ENST00000526869 DCAF8L2P0C7V8 631 aa38.5■■■■□ 3.75
SMCO4-203ENST00000526869 NACADO15069 1562 aa38.32■■■■□ 3.73
SMCO4-203ENST00000526869 RB1CC1Q8TDY2 1594 aa38■■■■□ 3.67
SMCO4-203ENST00000526869 SHROOM4Q9ULL8 1493 aa37.92■■■■□ 3.66
SMCO4-203ENST00000526869 SCRIBQ14160 1630 aa37.61■■■■□ 3.61
SMCO4-203ENST00000526869 UNC13AQ9UPW8 1703 aa37.16■■■■□ 3.54
SMCO4-203ENST00000526869 BICRAQ9NZM4 1560 aa36.81■■■■□ 3.48
SMCO4-203ENST00000526869 PABPN1Q86U42 306 aaKnown RBP eCLIP36.44■■■■□ 3.42
SMCO4-203ENST00000526869 SUPT5HO00267 1087 aaKnown RBP36.42■■■■□ 3.42
SMCO4-203ENST00000526869 CECR2Q9BXF3 1484 aa36.39■■■■□ 3.42
SMCO4-203ENST00000526869 RSF1Q96T23 1441 aaPredicted RBP36.34■■■■□ 3.41
SMCO4-203ENST00000526869 BAZ1AQ9NRL2 1556 aaPredicted RBP36.32■■■■□ 3.4
SMCO4-203ENST00000526869 MROH2BQ7Z745 1585 aa36.22■■■■□ 3.39
SMCO4-203ENST00000526869 SMARCA4P51532 1647 aa36.16■■■■□ 3.38
SMCO4-203ENST00000526869 WIZO95785 1651 aa35.89■■■■□ 3.34
SMCO4-203ENST00000526869 PEG3Q9GZU2 1588 aa35.81■■■■□ 3.32
SMCO4-203ENST00000526869 EIF4G1Q04637 1599 aaKnown RBP35.7■■■■□ 3.31
SMCO4-203ENST00000526869 TOP2AP11388 1531 aaKnown RBP35.64■■■■□ 3.3
SMCO4-203ENST00000526869 SMARCA2P51531 1590 aa35.62■■■■□ 3.29
SMCO4-203ENST00000526869 ATAD2BQ9ULI0 1458 aa35.56■■■■□ 3.28
SMCO4-203ENST00000526869 BAZ1BQ9UIG0 1483 aaKnown RBP35.35■■■■□ 3.25
SMCO4-203ENST00000526869 NCAPD3P42695 1498 aa35.34■■■■□ 3.25
SMCO4-203ENST00000526869 HMGXB3Q12766 1538 aa35.32■■■■□ 3.25
SMCO4-203ENST00000526869 CCDC88BA6NC98 1476 aa35.18■■■■□ 3.22
SMCO4-203ENST00000526869 CC2D2AQ9P2K1 1620 aa35.17■■■■□ 3.22
SMCO4-203ENST00000526869 CHIC1Q5VXU3 224 aa34.91■■■■□ 3.18
SMCO4-203ENST00000526869 CFTRP13569 1480 aa34.49■■■■□ 3.11
SMCO4-203ENST00000526869 PRDM2Q13029 1718 aa34.38■■■■□ 3.09
SMCO4-203ENST00000526869 CADPSQ9ULU8 1353 aa34.36■■■■□ 3.09
SMCO4-203ENST00000526869 TRIM41Q8WV44 630 aa34.36■■■■□ 3.09
SMCO4-203ENST00000526869 ABCC8Q09428 1581 aa34.32■■■■□ 3.09
SMCO4-203ENST00000526869 DNAJC5BQ9UF47 199 aa34.22■■■■□ 3.07
SMCO4-203ENST00000526869 WRNQ14191 1432 aaPredicted RBP eCLIP34.21■■■■□ 3.07
SMCO4-203ENST00000526869 LAMC3Q9Y6N6 1575 aa34.19■■■■□ 3.06
SMCO4-203ENST00000526869 SYNJ1O43426 1573 aa34.06■■■■□ 3.04
SMCO4-203ENST00000526869 TOP2BQ02880 1626 aa34.02■■■■□ 3.04
SMCO4-203ENST00000526869 BIVM-ERCC5R4GMW8 1640 aa34.01■■■■□ 3.04
SMCO4-203ENST00000526869 NESP48681 1621 aa33.99■■■■□ 3.03
SMCO4-203ENST00000526869 FANCD2Q9BXW9 1451 aa33.97■■■■□ 3.03
SMCO4-203ENST00000526869 CUX1P39880 1505 aa33.9■■■■□ 3.02
SMCO4-203ENST00000526869 PDS5BQ9NTI5 1447 aa33.87■■■■□ 3.01
SMCO4-203ENST00000526869 CEP164Q9UPV0 1460 aa33.8■■■■□ 3
SMCO4-203ENST00000526869 EEA1Q15075 1411 aa33.77■■■■□ 3
SMCO4-203ENST00000526869 DNMBPQ6XZF7 1577 aa33.72■■■□□ 2.99
SMCO4-203ENST00000526869 KIF21AQ7Z4S6 1674 aa33.67■■■□□ 2.98
SMCO4-203ENST00000526869 SOGA1O94964 1423 aa33.64■■■□□ 2.98
SMCO4-203ENST00000526869 TOPBP1Q92547 1522 aa33.6■■■□□ 2.97
SMCO4-203ENST00000526869 FAM9AQ8IZU1 332 aaPredicted RBP33.58■■■□□ 2.97
SMCO4-203ENST00000526869 URB2Q14146 1524 aaKnown RBP33.55■■■□□ 2.96
SMCO4-203ENST00000526869 FGD5Q6ZNL6 1462 aa33.54■■■□□ 2.96
SMCO4-203ENST00000526869 RUSC2Q8N2Y8 1516 aa33.5■■■□□ 2.95
SMCO4-203ENST00000526869 MRC2Q9UBG0 1479 aa33.45■■■□□ 2.95
SMCO4-203ENST00000526869 LOC105371045A0A1W2PR82 267 aa33.43■■■□□ 2.94
SMCO4-203ENST00000526869 CSRNP3Q8WYN3 585 aa33.42■■■□□ 2.94
SMCO4-203ENST00000526869 POLA1P09884 1462 aaPredicted RBP33.42■■■□□ 2.94
SMCO4-203ENST00000526869 KIF27Q86VH2 1401 aa33.38■■■□□ 2.93
SMCO4-203ENST00000526869 ERCC6Q03468 1493 aa33.31■■■□□ 2.92
SMCO4-203ENST00000526869 WDR62O43379 1518 aa33.31■■■□□ 2.92
SMCO4-203ENST00000526869 ABCA10Q8WWZ4 1543 aa33.31■■■□□ 2.92
SMCO4-203ENST00000526869 KIF21BO75037 1637 aa33.31■■■□□ 2.92
SMCO4-203ENST00000526869 CUX2O14529 1486 aa33.28■■■□□ 2.92
SMCO4-203ENST00000526869 WDR97A6NE52 1622 aa33.24■■■□□ 2.91
SMCO4-203ENST00000526869 RAD54L2Q9Y4B4 1467 aa33.22■■■□□ 2.91
SMCO4-203ENST00000526869 THOC2Q8NI27 1593 aaKnown RBP33.21■■■□□ 2.91
SMCO4-203ENST00000526869 GOLGA3Q08378 1498 aa33.21■■■□□ 2.91
SMCO4-203ENST00000526869 TARBP1Q13395 1621 aaKnown RBP33.15■■■□□ 2.9
SMCO4-203ENST00000526869 PRXQ9BXM0 1461 aa33.14■■■□□ 2.9
SMCO4-203ENST00000526869 ERICH3Q5RHP9 1530 aa33.12■■■□□ 2.89
SMCO4-203ENST00000526869 TNIKQ9UKE5 1360 aa33.07■■■□□ 2.88
SMCO4-203ENST00000526869 ABCA5Q8WWZ7 1642 aa33.06■■■□□ 2.88
SMCO4-203ENST00000526869 IGF1RP08069 1367 aa33.06■■■□□ 2.88
SMCO4-203ENST00000526869 IFT140Q96RY7 1462 aa33.04■■■□□ 2.88
SMCO4-203ENST00000526869 RAPGEF2Q9Y4G8 1499 aa33.01■■■□□ 2.88
SMCO4-203ENST00000526869 EHMT2Q96KQ7 1210 aa32.98■■■□□ 2.87
SMCO4-203ENST00000526869 CUL7Q14999 1698 aa32.94■■■□□ 2.86
SMCO4-203ENST00000526869 GAPVD1Q14C86 1478 aa32.94■■■□□ 2.86
SMCO4-203ENST00000526869 TDRD9Q8NDG6 1382 aaKnown RBP32.89■■■□□ 2.86
SMCO4-203ENST00000526869 UBTFP17480 764 aaKnown RBP32.89■■■□□ 2.86
SMCO4-203ENST00000526869 CARMIL1Q5VZK9 1371 aa32.88■■■□□ 2.85
SMCO4-203ENST00000526869 CEP162Q5TB80 1403 aa32.83■■■□□ 2.85
SMCO4-203ENST00000526869 PBRM1Q86U86 1689 aa32.8■■■□□ 2.84
SMCO4-203ENST00000526869 GRIN2BQ13224 1484 aa32.74■■■□□ 2.83
SMCO4-203ENST00000526869 ZNF608Q9ULD9 1512 aaPredicted RBP32.73■■■□□ 2.83
SMCO4-203ENST00000526869 AQRO60306 1485 aaKnown RBP eCLIP32.72■■■□□ 2.83
SMCO4-203ENST00000526869 EIF4G3O43432 1585 aaKnown RBP32.7■■■□□ 2.83
SMCO4-203ENST00000526869 ADAMTS12P58397 1594 aa32.64■■■□□ 2.82
SMCO4-203ENST00000526869 FHAD1B1AJZ9 1412 aa32.62■■■□□ 2.81
SMCO4-203ENST00000526869 CLIP1P30622 1438 aa32.62■■■□□ 2.81
SMCO4-203ENST00000526869 MAGI1Q96QZ7 1491 aaPredicted RBP32.52■■■□□ 2.8
SMCO4-203ENST00000526869 CTTNBP2Q8WZ74 1663 aa32.52■■■□□ 2.8
SMCO4-203ENST00000526869 SNAPC4Q5SXM2 1469 aa32.48■■■□□ 2.79
SMCO4-203ENST00000526869 SYNJ2O15056 1496 aa32.36■■■□□ 2.77
SMCO4-203ENST00000526869 ARHGAP35Q9NRY4 1499 aa32.35■■■□□ 2.77
SMCO4-203ENST00000526869 VPS8Q8N3P4 1428 aa32.34■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms