RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 NISCHQ9Y2I1 1504 aa26.36■■□□□ 1.81
VPS11-202ENST00000526829 CCDC180Q9P1Z9 1646 aa23.7■■□□□ 1.38
VPS11-202ENST00000526829 ABCC9O60706 1549 aa23.64■■□□□ 1.38
VPS11-202ENST00000526829 RB1CC1Q8TDY2 1594 aa22.53■■□□□ 1.2
VPS11-202ENST00000526829 NACADO15069 1562 aa22.39■■□□□ 1.18
VPS11-202ENST00000526829 DNAJC5BQ9UF47 199 aa22.21■■□□□ 1.15
VPS11-202ENST00000526829 DCAF8L2P0C7V8 631 aa22.12■■□□□ 1.13
VPS11-202ENST00000526829 MYO15BQ96JP2 1530 aa22.11■■□□□ 1.13
VPS11-202ENST00000526829 UNC13AQ9UPW8 1703 aa22.04■■□□□ 1.12
VPS11-202ENST00000526829 PABPN1Q86U42 306 aaKnown RBP eCLIP21.98■■□□□ 1.11
VPS11-202ENST00000526829 BICRAQ9NZM4 1560 aa21.9■■□□□ 1.1
VPS11-202ENST00000526829 ZCCHC6Q5VYS8 1495 aaKnown RBP21.85■■□□□ 1.09
VPS11-202ENST00000526829 DCAF1Q9Y4B6 1507 aa21.81■■□□□ 1.08
VPS11-202ENST00000526829 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.05
VPS11-202ENST00000526829 SCRIBQ14160 1630 aa21.52■■□□□ 1.04
VPS11-202ENST00000526829 CC2D2AQ9P2K1 1620 aa21.39■■□□□ 1.01
VPS11-202ENST00000526829 EIF4G1Q04637 1599 aaKnown RBP21.35■■□□□ 1.01
VPS11-202ENST00000526829 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
VPS11-202ENST00000526829 NCAPD3P42695 1498 aa20.67■□□□□ 0.9
VPS11-202ENST00000526829 ATAD2BQ9ULI0 1458 aa20.59■□□□□ 0.89
VPS11-202ENST00000526829 SMARCA4P51532 1647 aa20.57■□□□□ 0.88
VPS11-202ENST00000526829 SMARCA2P51531 1590 aa20.53■□□□□ 0.88
VPS11-202ENST00000526829 HMGXB3Q12766 1538 aa20.52■□□□□ 0.88
VPS11-202ENST00000526829 BAZ1AQ9NRL2 1556 aaPredicted RBP20.45■□□□□ 0.87
VPS11-202ENST00000526829 CUX2O14529 1486 aa20.44■□□□□ 0.86
VPS11-202ENST00000526829 DNAJC5Q9H3Z4 198 aa20.43■□□□□ 0.86
VPS11-202ENST00000526829 PEG3Q9GZU2 1588 aa20.4■□□□□ 0.86
VPS11-202ENST00000526829 ERCC6Q03468 1493 aa20.4■□□□□ 0.86
VPS11-202ENST00000526829 BAZ1BQ9UIG0 1483 aaKnown RBP20.36■□□□□ 0.85
VPS11-202ENST00000526829 NESP48681 1621 aa20.31■□□□□ 0.84
VPS11-202ENST00000526829 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
VPS11-202ENST00000526829 LAMC3Q9Y6N6 1575 aa20.2■□□□□ 0.82
VPS11-202ENST00000526829 THOC2Q8NI27 1593 aaKnown RBP20.16■□□□□ 0.82
VPS11-202ENST00000526829 KIF21AQ7Z4S6 1674 aa20.07■□□□□ 0.8
VPS11-202ENST00000526829 PDS5BQ9NTI5 1447 aa20.06■□□□□ 0.8
VPS11-202ENST00000526829 WIZO95785 1651 aa20.04■□□□□ 0.8
VPS11-202ENST00000526829 CADPSQ9ULU8 1353 aa20.02■□□□□ 0.8
VPS11-202ENST00000526829 MRC2Q9UBG0 1479 aa19.9■□□□□ 0.78
VPS11-202ENST00000526829 WDR62O43379 1518 aa19.88■□□□□ 0.77
VPS11-202ENST00000526829 RSF1Q96T23 1441 aaPredicted RBP19.86■□□□□ 0.77
VPS11-202ENST00000526829 TOP2AP11388 1531 aaKnown RBP19.81■□□□□ 0.76
VPS11-202ENST00000526829 CEP164Q9UPV0 1460 aa19.8■□□□□ 0.76
VPS11-202ENST00000526829 CFTRP13569 1480 aa19.8■□□□□ 0.76
VPS11-202ENST00000526829 FANCD2Q9BXW9 1451 aa19.78■□□□□ 0.76
VPS11-202ENST00000526829 URB2Q14146 1524 aaKnown RBP19.64■□□□□ 0.73
VPS11-202ENST00000526829 PRDM2Q13029 1718 aa19.63■□□□□ 0.73
VPS11-202ENST00000526829 CCDC88BA6NC98 1476 aa19.56■□□□□ 0.72
VPS11-202ENST00000526829 PELP1Q8IZL8 1130 aaKnown RBP19.54■□□□□ 0.72
VPS11-202ENST00000526829 MYT1Q01538 1121 aa19.53■□□□□ 0.72
VPS11-202ENST00000526829 OSCARQ8IYS5 282 aa19.44■□□□□ 0.7
VPS11-202ENST00000526829 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
VPS11-202ENST00000526829 IFT140Q96RY7 1462 aa19.43■□□□□ 0.7
VPS11-202ENST00000526829 TOPBP1Q92547 1522 aa19.41■□□□□ 0.7
VPS11-202ENST00000526829 ABCC8Q09428 1581 aa19.38■□□□□ 0.69
VPS11-202ENST00000526829 ZNF608Q9ULD9 1512 aaPredicted RBP19.38■□□□□ 0.69
VPS11-202ENST00000526829 DNMBPQ6XZF7 1577 aa19.35■□□□□ 0.69
VPS11-202ENST00000526829 EIF4G3O43432 1585 aaKnown RBP19.29■□□□□ 0.68
VPS11-202ENST00000526829 TARBP1Q13395 1621 aaKnown RBP19.27■□□□□ 0.68
VPS11-202ENST00000526829 RIMBP3CA6NJZ7 1639 aa19.23■□□□□ 0.67
VPS11-202ENST00000526829 RIMBP3BA6NNM3 1639 aa19.23■□□□□ 0.67
VPS11-202ENST00000526829 RIMBP3Q9UFD9 1639 aa19.23■□□□□ 0.67
VPS11-202ENST00000526829 POLA1P09884 1462 aaPredicted RBP19.21■□□□□ 0.67
VPS11-202ENST00000526829 AQRO60306 1485 aaKnown RBP eCLIP19.19■□□□□ 0.66
VPS11-202ENST00000526829 ARHGEF11O15085 1522 aa19.17■□□□□ 0.66
VPS11-202ENST00000526829 CHD1O14646 1710 aa19.15■□□□□ 0.66
VPS11-202ENST00000526829 RAD54L2Q9Y4B4 1467 aa19.12■□□□□ 0.65
VPS11-202ENST00000526829 SOGA1O94964 1423 aa19.1■□□□□ 0.65
VPS11-202ENST00000526829 WDR97A6NE52 1622 aa19.09■□□□□ 0.65
VPS11-202ENST00000526829 FGD5Q6ZNL6 1462 aa19.08■□□□□ 0.64
VPS11-202ENST00000526829 CUX1P39880 1505 aa19.07■□□□□ 0.64
VPS11-202ENST00000526829 TDRD9Q8NDG6 1382 aaKnown RBP19.05■□□□□ 0.64
VPS11-202ENST00000526829 TTBK1Q5TCY1 1321 aaPredicted RBP19.05■□□□□ 0.64
VPS11-202ENST00000526829 FBLN2P98095 1184 aa19.01■□□□□ 0.63
VPS11-202ENST00000526829 SNAPC4Q5SXM2 1469 aa19■□□□□ 0.63
VPS11-202ENST00000526829 ARAP1Q96P48 1450 aa18.98■□□□□ 0.63
VPS11-202ENST00000526829 MAGI1Q96QZ7 1491 aaPredicted RBP18.97■□□□□ 0.63
VPS11-202ENST00000526829 CYB5RLQ6IPT4 315 aa18.97■□□□□ 0.63
VPS11-202ENST00000526829 GRIN2BQ13224 1484 aa18.96■□□□□ 0.63
VPS11-202ENST00000526829 CLASP1Q7Z460 1538 aa18.96■□□□□ 0.63
VPS11-202ENST00000526829 SYNJ1O43426 1573 aa18.91■□□□□ 0.62
VPS11-202ENST00000526829 SYNJ2O15056 1496 aa18.91■□□□□ 0.62
VPS11-202ENST00000526829 SLC24A1O60721 1099 aa18.9■□□□□ 0.62
VPS11-202ENST00000526829 PBRM1Q86U86 1689 aa18.9■□□□□ 0.62
VPS11-202ENST00000526829 CHMP7Q8WUX9 453 aaPredicted RBP18.9■□□□□ 0.62
VPS11-202ENST00000526829 ABCA10Q8WWZ4 1543 aa18.89■□□□□ 0.61
VPS11-202ENST00000526829 GAPVD1Q14C86 1478 aa18.88■□□□□ 0.61
VPS11-202ENST00000526829 ABCA5Q8WWZ7 1642 aa18.87■□□□□ 0.61
VPS11-202ENST00000526829 SUPT5HO00267 1087 aaKnown RBP18.87■□□□□ 0.61
VPS11-202ENST00000526829 BIVM-ERCC5R4GMW8 1640 aa18.79■□□□□ 0.6
VPS11-202ENST00000526829 WRNQ14191 1432 aaPredicted RBP eCLIP18.77■□□□□ 0.6
VPS11-202ENST00000526829 TOP2BQ02880 1626 aa18.77■□□□□ 0.6
VPS11-202ENST00000526829 TRHP20396 242 aaPredicted RBP18.73■□□□□ 0.59
VPS11-202ENST00000526829 ADAMTS12P58397 1594 aa18.72■□□□□ 0.59
VPS11-202ENST00000526829 GRIN2AQ12879 1464 aa18.72■□□□□ 0.59
VPS11-202ENST00000526829 NUP160Q12769 1436 aa18.67■□□□□ 0.58
VPS11-202ENST00000526829 CEP170Q5SW79 1584 aa18.66■□□□□ 0.58
VPS11-202ENST00000526829 FHAD1B1AJZ9 1412 aa18.65■□□□□ 0.58
VPS11-202ENST00000526829 ERICH3Q5RHP9 1530 aa18.65■□□□□ 0.58
VPS11-202ENST00000526829 ERCC6L2Q5T890 1561 aa18.63■□□□□ 0.57
VPS11-202ENST00000526829 SHROOM2Q13796 1616 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms