RNA–Protein interactions for RNA: ENST00000526506.5

HIF3A-210, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-210ENST00000526506 NISCHQ9Y2I1 1504 aa36.58■■■■□ 3.45
HIF3A-210ENST00000526506 CCDC180Q9P1Z9 1646 aa32.52■■■□□ 2.8
HIF3A-210ENST00000526506 ABCC9O60706 1549 aa31.84■■■□□ 2.69
HIF3A-210ENST00000526506 RB1CC1Q8TDY2 1594 aa30.62■■■□□ 2.49
HIF3A-210ENST00000526506 NACADO15069 1562 aa30.59■■■□□ 2.49
HIF3A-210ENST00000526506 DCAF8L2P0C7V8 631 aa30.57■■■□□ 2.48
HIF3A-210ENST00000526506 ZCCHC6Q5VYS8 1495 aaKnown RBP30.47■■■□□ 2.47
HIF3A-210ENST00000526506 MYO15BQ96JP2 1530 aa30.42■■■□□ 2.46
HIF3A-210ENST00000526506 DCAF1Q9Y4B6 1507 aa30.27■■■□□ 2.44
HIF3A-210ENST00000526506 UNC13AQ9UPW8 1703 aa29.87■■■□□ 2.37
HIF3A-210ENST00000526506 PABPN1Q86U42 306 aaKnown RBP eCLIP29.74■■■□□ 2.35
HIF3A-210ENST00000526506 BICRAQ9NZM4 1560 aa29.67■■■□□ 2.34
HIF3A-210ENST00000526506 SCRIBQ14160 1630 aa29.67■■■□□ 2.34
HIF3A-210ENST00000526506 SHROOM4Q9ULL8 1493 aa29.41■■■□□ 2.3
HIF3A-210ENST00000526506 DNAJC5BQ9UF47 199 aa29.36■■■□□ 2.29
HIF3A-210ENST00000526506 EIF4G1Q04637 1599 aaKnown RBP28.91■■■□□ 2.22
HIF3A-210ENST00000526506 CC2D2AQ9P2K1 1620 aa28.78■■■□□ 2.2
HIF3A-210ENST00000526506 CECR2Q9BXF3 1484 aa28.61■■■□□ 2.17
HIF3A-210ENST00000526506 SMARCA4P51532 1647 aa28.38■■■□□ 2.13
HIF3A-210ENST00000526506 BAZ1AQ9NRL2 1556 aaPredicted RBP28.36■■■□□ 2.13
HIF3A-210ENST00000526506 NCAPD3P42695 1498 aa28.23■■■□□ 2.11
HIF3A-210ENST00000526506 ATAD2BQ9ULI0 1458 aa28.23■■■□□ 2.11
HIF3A-210ENST00000526506 SMARCA2P51531 1590 aa28.21■■■□□ 2.11
HIF3A-210ENST00000526506 MROH2BQ7Z745 1585 aa28.18■■■□□ 2.1
HIF3A-210ENST00000526506 PEG3Q9GZU2 1588 aa28.11■■■□□ 2.09
HIF3A-210ENST00000526506 HMGXB3Q12766 1538 aa28.09■■■□□ 2.09
HIF3A-210ENST00000526506 BAZ1BQ9UIG0 1483 aaKnown RBP28.02■■■□□ 2.08
HIF3A-210ENST00000526506 RSF1Q96T23 1441 aaPredicted RBP27.86■■■□□ 2.05
HIF3A-210ENST00000526506 WIZO95785 1651 aa27.86■■■□□ 2.05
HIF3A-210ENST00000526506 TOP2AP11388 1531 aaKnown RBP27.6■■■□□ 2.01
HIF3A-210ENST00000526506 NESP48681 1621 aa27.53■■■□□ 2
HIF3A-210ENST00000526506 LAMC3Q9Y6N6 1575 aa27.48■■□□□ 1.99
HIF3A-210ENST00000526506 ERCC6Q03468 1493 aa27.46■■□□□ 1.99
HIF3A-210ENST00000526506 CADPSQ9ULU8 1353 aa27.4■■□□□ 1.98
HIF3A-210ENST00000526506 PDS5BQ9NTI5 1447 aa27.31■■□□□ 1.96
HIF3A-210ENST00000526506 CCDC88BA6NC98 1476 aa27.26■■□□□ 1.95
HIF3A-210ENST00000526506 CFTRP13569 1480 aa27.24■■□□□ 1.95
HIF3A-210ENST00000526506 DNAJC5Q9H3Z4 198 aa27.2■■□□□ 1.94
HIF3A-210ENST00000526506 KIF21AQ7Z4S6 1674 aa27.19■■□□□ 1.94
HIF3A-210ENST00000526506 CUX2O14529 1486 aa27.17■■□□□ 1.94
HIF3A-210ENST00000526506 SUPT5HO00267 1087 aaKnown RBP27.15■■□□□ 1.94
HIF3A-210ENST00000526506 THOC2Q8NI27 1593 aaKnown RBP27.12■■□□□ 1.93
HIF3A-210ENST00000526506 FANCD2Q9BXW9 1451 aa27.09■■□□□ 1.93
HIF3A-210ENST00000526506 CEP164Q9UPV0 1460 aa27.06■■□□□ 1.92
HIF3A-210ENST00000526506 MRC2Q9UBG0 1479 aa27.03■■□□□ 1.92
HIF3A-210ENST00000526506 PRDM2Q13029 1718 aa26.99■■□□□ 1.91
HIF3A-210ENST00000526506 WDR62O43379 1518 aa26.93■■□□□ 1.9
HIF3A-210ENST00000526506 URB2Q14146 1524 aaKnown RBP26.8■■□□□ 1.88
HIF3A-210ENST00000526506 ABCC8Q09428 1581 aa26.67■■□□□ 1.86
HIF3A-210ENST00000526506 TOPBP1Q92547 1522 aa26.65■■□□□ 1.86
HIF3A-210ENST00000526506 DNMBPQ6XZF7 1577 aa26.63■■□□□ 1.85
HIF3A-210ENST00000526506 IFT140Q96RY7 1462 aa26.5■■□□□ 1.83
HIF3A-210ENST00000526506 CUX1P39880 1505 aa26.44■■□□□ 1.82
HIF3A-210ENST00000526506 POLA1P09884 1462 aaPredicted RBP26.43■■□□□ 1.82
HIF3A-210ENST00000526506 FGD5Q6ZNL6 1462 aa26.36■■□□□ 1.81
HIF3A-210ENST00000526506 ZNF608Q9ULD9 1512 aaPredicted RBP26.36■■□□□ 1.81
HIF3A-210ENST00000526506 TARBP1Q13395 1621 aaKnown RBP26.36■■□□□ 1.81
HIF3A-210ENST00000526506 SOGA1O94964 1423 aa26.32■■□□□ 1.8
HIF3A-210ENST00000526506 RAD54L2Q9Y4B4 1467 aa26.3■■□□□ 1.8
HIF3A-210ENST00000526506 WRNQ14191 1432 aaPredicted RBP eCLIP26.29■■□□□ 1.8
HIF3A-210ENST00000526506 EIF4G3O43432 1585 aaKnown RBP26.26■■□□□ 1.79
HIF3A-210ENST00000526506 AQRO60306 1485 aaKnown RBP eCLIP26.22■■□□□ 1.79
HIF3A-210ENST00000526506 TOP2BQ02880 1626 aa26.21■■□□□ 1.79
HIF3A-210ENST00000526506 BIVM-ERCC5R4GMW8 1640 aa26.21■■□□□ 1.79
HIF3A-210ENST00000526506 SYNJ1O43426 1573 aa26.2■■□□□ 1.79
HIF3A-210ENST00000526506 TDRD9Q8NDG6 1382 aaKnown RBP26.17■■□□□ 1.78
HIF3A-210ENST00000526506 WDR97A6NE52 1622 aa26.16■■□□□ 1.78
HIF3A-210ENST00000526506 ABCA10Q8WWZ4 1543 aa26.11■■□□□ 1.77
HIF3A-210ENST00000526506 OSCARQ8IYS5 282 aa26.03■■□□□ 1.76
HIF3A-210ENST00000526506 GRIN2BQ13224 1484 aa26.02■■□□□ 1.76
HIF3A-210ENST00000526506 GAPVD1Q14C86 1478 aa26.02■■□□□ 1.76
HIF3A-210ENST00000526506 ABCA5Q8WWZ7 1642 aa26■■□□□ 1.75
HIF3A-210ENST00000526506 SNAPC4Q5SXM2 1469 aa25.98■■□□□ 1.75
HIF3A-210ENST00000526506 MAGI1Q96QZ7 1491 aaPredicted RBP25.96■■□□□ 1.75
HIF3A-210ENST00000526506 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
HIF3A-210ENST00000526506 FBLN2P98095 1184 aa25.92■■□□□ 1.74
HIF3A-210ENST00000526506 CHD1O14646 1710 aa25.91■■□□□ 1.74
HIF3A-210ENST00000526506 TRIM41Q8WV44 630 aa25.87■■□□□ 1.73
HIF3A-210ENST00000526506 SYNJ2O15056 1496 aa25.85■■□□□ 1.73
HIF3A-210ENST00000526506 CHMP7Q8WUX9 453 aaPredicted RBP25.85■■□□□ 1.73
HIF3A-210ENST00000526506 ERICH3Q5RHP9 1530 aa25.79■■□□□ 1.72
HIF3A-210ENST00000526506 ADAMTS12P58397 1594 aa25.75■■□□□ 1.71
HIF3A-210ENST00000526506 KIF27Q86VH2 1401 aa25.75■■□□□ 1.71
HIF3A-210ENST00000526506 FHAD1B1AJZ9 1412 aa25.72■■□□□ 1.71
HIF3A-210ENST00000526506 GRIN2AQ12879 1464 aa25.69■■□□□ 1.7
HIF3A-210ENST00000526506 CLASP1Q7Z460 1538 aa25.65■■□□□ 1.7
HIF3A-210ENST00000526506 IGF1RP08069 1367 aa25.62■■□□□ 1.69
HIF3A-210ENST00000526506 ARHGEF11O15085 1522 aa25.61■■□□□ 1.69
HIF3A-210ENST00000526506 RIMBP3CA6NJZ7 1639 aa25.59■■□□□ 1.69
HIF3A-210ENST00000526506 RIMBP3BA6NNM3 1639 aa25.59■■□□□ 1.69
HIF3A-210ENST00000526506 RIMBP3Q9UFD9 1639 aa25.59■■□□□ 1.69
HIF3A-210ENST00000526506 NUP160Q12769 1436 aa25.57■■□□□ 1.68
HIF3A-210ENST00000526506 CUL7Q14999 1698 aa25.56■■□□□ 1.68
HIF3A-210ENST00000526506 CEP170Q5SW79 1584 aa25.55■■□□□ 1.68
HIF3A-210ENST00000526506 RUSC2Q8N2Y8 1516 aa25.47■■□□□ 1.67
HIF3A-210ENST00000526506 CARMIL1Q5VZK9 1371 aa25.47■■□□□ 1.67
HIF3A-210ENST00000526506 ARAP1Q96P48 1450 aa25.4■■□□□ 1.66
HIF3A-210ENST00000526506 CYB5RLQ6IPT4 315 aa25.37■■□□□ 1.65
HIF3A-210ENST00000526506 SHROOM2Q13796 1616 aa25.37■■□□□ 1.65
HIF3A-210ENST00000526506 KIAA0586Q9BVV6 1533 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms