RNA–Protein interactions for RNA: ENST00000526468.1

CAPN1-204, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 690 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-204ENST00000526468 NISCHQ9Y2I1 1504 aa29.7■■■□□ 2.34
CAPN1-204ENST00000526468 CCDC180Q9P1Z9 1646 aa26.91■■□□□ 1.9
CAPN1-204ENST00000526468 ABCC9O60706 1549 aa26.76■■□□□ 1.87
CAPN1-204ENST00000526468 RB1CC1Q8TDY2 1594 aa25.53■■□□□ 1.68
CAPN1-204ENST00000526468 NACADO15069 1562 aa25.29■■□□□ 1.64
CAPN1-204ENST00000526468 UNC13AQ9UPW8 1703 aa25.2■■□□□ 1.62
CAPN1-204ENST00000526468 DNAJC5BQ9UF47 199 aa24.93■■□□□ 1.58
CAPN1-204ENST00000526468 DCAF8L2P0C7V8 631 aa24.91■■□□□ 1.58
CAPN1-204ENST00000526468 MYO15BQ96JP2 1530 aa24.86■■□□□ 1.57
CAPN1-204ENST00000526468 BICRAQ9NZM4 1560 aa24.76■■□□□ 1.55
CAPN1-204ENST00000526468 PABPN1Q86U42 306 aaKnown RBP eCLIP24.75■■□□□ 1.55
CAPN1-204ENST00000526468 ZCCHC6Q5VYS8 1495 aaKnown RBP24.65■■□□□ 1.54
CAPN1-204ENST00000526468 DCAF1Q9Y4B6 1507 aa24.53■■□□□ 1.52
CAPN1-204ENST00000526468 SCRIBQ14160 1630 aa24.47■■□□□ 1.51
CAPN1-204ENST00000526468 SHROOM4Q9ULL8 1493 aa24.42■■□□□ 1.5
CAPN1-204ENST00000526468 CC2D2AQ9P2K1 1620 aa24.27■■□□□ 1.48
CAPN1-204ENST00000526468 EIF4G1Q04637 1599 aaKnown RBP24.18■■□□□ 1.46
CAPN1-204ENST00000526468 CECR2Q9BXF3 1484 aa24.11■■□□□ 1.45
CAPN1-204ENST00000526468 SMARCA4P51532 1647 aa23.31■■□□□ 1.32
CAPN1-204ENST00000526468 SMARCA2P51531 1590 aa23.23■■□□□ 1.31
CAPN1-204ENST00000526468 NCAPD3P42695 1498 aa23.22■■□□□ 1.31
CAPN1-204ENST00000526468 HMGXB3Q12766 1538 aa23.22■■□□□ 1.31
CAPN1-204ENST00000526468 ATAD2BQ9ULI0 1458 aa23.18■■□□□ 1.3
CAPN1-204ENST00000526468 ERCC6Q03468 1493 aa23.16■■□□□ 1.3
CAPN1-204ENST00000526468 BAZ1AQ9NRL2 1556 aaPredicted RBP23.12■■□□□ 1.29
CAPN1-204ENST00000526468 CUX2O14529 1486 aa23.11■■□□□ 1.29
CAPN1-204ENST00000526468 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
CAPN1-204ENST00000526468 PEG3Q9GZU2 1588 aa23.02■■□□□ 1.28
CAPN1-204ENST00000526468 NESP48681 1621 aa22.97■■□□□ 1.27
CAPN1-204ENST00000526468 DNAJC5Q9H3Z4 198 aa22.96■■□□□ 1.27
CAPN1-204ENST00000526468 KIF21AQ7Z4S6 1674 aa22.91■■□□□ 1.26
CAPN1-204ENST00000526468 THOC2Q8NI27 1593 aaKnown RBP22.91■■□□□ 1.26
CAPN1-204ENST00000526468 MROH2BQ7Z745 1585 aa22.89■■□□□ 1.25
CAPN1-204ENST00000526468 LAMC3Q9Y6N6 1575 aa22.88■■□□□ 1.25
CAPN1-204ENST00000526468 WIZO95785 1651 aa22.73■■□□□ 1.23
CAPN1-204ENST00000526468 PDS5BQ9NTI5 1447 aa22.6■■□□□ 1.21
CAPN1-204ENST00000526468 MRC2Q9UBG0 1479 aa22.51■■□□□ 1.19
CAPN1-204ENST00000526468 WDR62O43379 1518 aa22.51■■□□□ 1.19
CAPN1-204ENST00000526468 CADPSQ9ULU8 1353 aa22.49■■□□□ 1.19
CAPN1-204ENST00000526468 PRDM2Q13029 1718 aa22.48■■□□□ 1.19
CAPN1-204ENST00000526468 CEP164Q9UPV0 1460 aa22.42■■□□□ 1.18
CAPN1-204ENST00000526468 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
CAPN1-204ENST00000526468 FANCD2Q9BXW9 1451 aa22.34■■□□□ 1.17
CAPN1-204ENST00000526468 RSF1Q96T23 1441 aaPredicted RBP22.3■■□□□ 1.16
CAPN1-204ENST00000526468 CFTRP13569 1480 aa22.28■■□□□ 1.16
CAPN1-204ENST00000526468 URB2Q14146 1524 aaKnown RBP22.18■■□□□ 1.14
CAPN1-204ENST00000526468 TRIM41Q8WV44 630 aa22.03■■□□□ 1.12
CAPN1-204ENST00000526468 CCDC88BA6NC98 1476 aa22.01■■□□□ 1.11
CAPN1-204ENST00000526468 EIF4G3O43432 1585 aaKnown RBP21.95■■□□□ 1.1
CAPN1-204ENST00000526468 TOPBP1Q92547 1522 aa21.93■■□□□ 1.1
CAPN1-204ENST00000526468 DNMBPQ6XZF7 1577 aa21.92■■□□□ 1.1
CAPN1-204ENST00000526468 IFT140Q96RY7 1462 aa21.92■■□□□ 1.1
CAPN1-204ENST00000526468 ZNF608Q9ULD9 1512 aaPredicted RBP21.9■■□□□ 1.1
CAPN1-204ENST00000526468 CHD1O14646 1710 aa21.89■■□□□ 1.1
CAPN1-204ENST00000526468 RIMBP3CA6NJZ7 1639 aa21.88■■□□□ 1.09
CAPN1-204ENST00000526468 RIMBP3BA6NNM3 1639 aa21.88■■□□□ 1.09
CAPN1-204ENST00000526468 RIMBP3Q9UFD9 1639 aa21.88■■□□□ 1.09
CAPN1-204ENST00000526468 OSCARQ8IYS5 282 aa21.84■■□□□ 1.09
CAPN1-204ENST00000526468 ABCC8Q09428 1581 aa21.83■■□□□ 1.09
CAPN1-204ENST00000526468 TARBP1Q13395 1621 aaKnown RBP21.81■■□□□ 1.08
CAPN1-204ENST00000526468 ARHGEF11O15085 1522 aa21.72■■□□□ 1.07
CAPN1-204ENST00000526468 POLA1P09884 1462 aaPredicted RBP21.7■■□□□ 1.06
CAPN1-204ENST00000526468 WDR97A6NE52 1622 aa21.62■■□□□ 1.05
CAPN1-204ENST00000526468 AQRO60306 1485 aaKnown RBP eCLIP21.62■■□□□ 1.052e-6■■□□□ 13.9
CAPN1-204ENST00000526468 PBRM1Q86U86 1689 aa21.59■■□□□ 1.05
CAPN1-204ENST00000526468 RAD54L2Q9Y4B4 1467 aa21.58■■□□□ 1.04
CAPN1-204ENST00000526468 FGD5Q6ZNL6 1462 aa21.57■■□□□ 1.04
CAPN1-204ENST00000526468 CUX1P39880 1505 aa21.55■■□□□ 1.04
CAPN1-204ENST00000526468 SNAPC4Q5SXM2 1469 aa21.52■■□□□ 1.03
CAPN1-204ENST00000526468 SOGA1O94964 1423 aa21.49■■□□□ 1.03
CAPN1-204ENST00000526468 ARAP1Q96P48 1450 aa21.48■■□□□ 1.03
CAPN1-204ENST00000526468 SYNJ1O43426 1573 aa21.47■■□□□ 1.03
CAPN1-204ENST00000526468 CLASP1Q7Z460 1538 aa21.46■■□□□ 1.03
CAPN1-204ENST00000526468 FBLN2P98095 1184 aa21.45■■□□□ 1.02
CAPN1-204ENST00000526468 TDRD9Q8NDG6 1382 aaKnown RBP21.45■■□□□ 1.02
CAPN1-204ENST00000526468 MAGI1Q96QZ7 1491 aaPredicted RBP21.44■■□□□ 1.02
CAPN1-204ENST00000526468 ABCA5Q8WWZ7 1642 aa21.4■■□□□ 1.02
CAPN1-204ENST00000526468 GRIN2BQ13224 1484 aa21.39■■□□□ 1.02
CAPN1-204ENST00000526468 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
CAPN1-204ENST00000526468 SYNJ2O15056 1496 aa21.35■■□□□ 1.01
CAPN1-204ENST00000526468 GAPVD1Q14C86 1478 aa21.31■■□□□ 1
CAPN1-204ENST00000526468 BIVM-ERCC5R4GMW8 1640 aa21.3■■□□□ 1
CAPN1-204ENST00000526468 ABCA10Q8WWZ4 1543 aa21.29■■□□□ 1
CAPN1-204ENST00000526468 CHMP7Q8WUX9 453 aaPredicted RBP21.26■□□□□ 0.99
CAPN1-204ENST00000526468 ADAMTS12P58397 1594 aa21.26■□□□□ 0.99
CAPN1-204ENST00000526468 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
CAPN1-204ENST00000526468 SUPT5HO00267 1087 aaKnown RBP21.2■□□□□ 0.98
CAPN1-204ENST00000526468 TRHP20396 242 aaPredicted RBP21.19■□□□□ 0.98
CAPN1-204ENST00000526468 GRIN2AQ12879 1464 aa21.15■□□□□ 0.98
CAPN1-204ENST00000526468 CEP170Q5SW79 1584 aa21.14■□□□□ 0.98
CAPN1-204ENST00000526468 WRNQ14191 1432 aaPredicted RBP eCLIP21.13■□□□□ 0.97
CAPN1-204ENST00000526468 SHROOM2Q13796 1616 aa21.1■□□□□ 0.97
CAPN1-204ENST00000526468 ERCC6L2Q5T890 1561 aa21.1■□□□□ 0.97
CAPN1-204ENST00000526468 ERICH3Q5RHP9 1530 aa21.05■□□□□ 0.96
CAPN1-204ENST00000526468 NUP160Q12769 1436 aa21.04■□□□□ 0.96
CAPN1-204ENST00000526468 FHAD1B1AJZ9 1412 aa21.01■□□□□ 0.95
CAPN1-204ENST00000526468 RUSC2Q8N2Y8 1516 aa20.98■□□□□ 0.95
CAPN1-204ENST00000526468 KIF13AQ9H1H9 1805 aa20.97■□□□□ 0.95
CAPN1-204ENST00000526468 CUL7Q14999 1698 aa20.87■□□□□ 0.93
CAPN1-204ENST00000526468 PRG4Q92954 1404 aaPredicted RBP20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms