RNA–Protein interactions for RNA: ENST00000526149.1

CKLF-206, Transcript of chemokine like factor, humanhuman

TSL 2

Gene CKLF, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKLF-206ENST00000526149 NISCHQ9Y2I1 1504 aa54.67■■■■■ 6.34
CKLF-206ENST00000526149 CCDC180Q9P1Z9 1646 aa48.54■■■■■ 5.36
CKLF-206ENST00000526149 ABCC9O60706 1549 aa47.67■■■■■ 5.22
CKLF-206ENST00000526149 RB1CC1Q8TDY2 1594 aa45.75■■■■■ 4.91
CKLF-206ENST00000526149 DCAF8L2P0C7V8 631 aa45.7■■■■■ 4.91
CKLF-206ENST00000526149 NACADO15069 1562 aa45.69■■■■■ 4.9
CKLF-206ENST00000526149 ZCCHC6Q5VYS8 1495 aaKnown RBP45.51■■■■■ 4.88
CKLF-206ENST00000526149 MYO15BQ96JP2 1530 aa45.42■■■■■ 4.86
CKLF-206ENST00000526149 DCAF1Q9Y4B6 1507 aa45.2■■■■■ 4.83
CKLF-206ENST00000526149 UNC13AQ9UPW8 1703 aa44.72■■■■■ 4.75
CKLF-206ENST00000526149 PABPN1Q86U42 306 aaKnown RBP eCLIP44.59■■■■■ 4.73
CKLF-206ENST00000526149 BICRAQ9NZM4 1560 aa44.47■■■■■ 4.71
CKLF-206ENST00000526149 SCRIBQ14160 1630 aa44.34■■■■■ 4.69
CKLF-206ENST00000526149 DNAJC5BQ9UF47 199 aa43.96■■■■■ 4.63
CKLF-206ENST00000526149 SHROOM4Q9ULL8 1493 aa43.88■■■■■ 4.61
CKLF-206ENST00000526149 EIF4G1Q04637 1599 aaKnown RBP43.24■■■■■ 4.51
CKLF-206ENST00000526149 CC2D2AQ9P2K1 1620 aa43.09■■■■■ 4.49
CKLF-206ENST00000526149 CECR2Q9BXF3 1484 aa42.82■■■■■ 4.45
CKLF-206ENST00000526149 SMARCA4P51532 1647 aa42.4■■■■■ 4.38
CKLF-206ENST00000526149 BAZ1AQ9NRL2 1556 aaPredicted RBP42.33■■■■■ 4.37
CKLF-206ENST00000526149 ATAD2BQ9ULI0 1458 aa42.24■■■■■ 4.35
CKLF-206ENST00000526149 NCAPD3P42695 1498 aa42.23■■■■■ 4.35
CKLF-206ENST00000526149 MROH2BQ7Z745 1585 aa42.17■■■■■ 4.34
CKLF-206ENST00000526149 SMARCA2P51531 1590 aa42.1■■■■■ 4.33
CKLF-206ENST00000526149 PEG3Q9GZU2 1588 aa42■■■■■ 4.31
CKLF-206ENST00000526149 HMGXB3Q12766 1538 aa41.95■■■■■ 4.31
CKLF-206ENST00000526149 BAZ1BQ9UIG0 1483 aaKnown RBP41.83■■■■■ 4.29
CKLF-206ENST00000526149 WIZO95785 1651 aa41.67■■■■■ 4.26
CKLF-206ENST00000526149 RSF1Q96T23 1441 aaPredicted RBP41.66■■■■■ 4.26
CKLF-206ENST00000526149 NESP48681 1621 aa41.27■■■■■ 4.2
CKLF-206ENST00000526149 TOP2AP11388 1531 aaKnown RBP41.19■■■■■ 4.18
CKLF-206ENST00000526149 LAMC3Q9Y6N6 1575 aa41.05■■■■■ 4.16
CKLF-206ENST00000526149 ERCC6Q03468 1493 aa41.02■■■■■ 4.16
CKLF-206ENST00000526149 CADPSQ9ULU8 1353 aa40.99■■■■■ 4.15
CKLF-206ENST00000526149 PDS5BQ9NTI5 1447 aa40.8■■■■■ 4.12
CKLF-206ENST00000526149 CCDC88BA6NC98 1476 aa40.77■■■■■ 4.12
CKLF-206ENST00000526149 CFTRP13569 1480 aa40.72■■■■■ 4.11
CKLF-206ENST00000526149 KIF21AQ7Z4S6 1674 aa40.69■■■■■ 4.1
CKLF-206ENST00000526149 CUX2O14529 1486 aa40.64■■■■■ 4.1
CKLF-206ENST00000526149 THOC2Q8NI27 1593 aaKnown RBP40.59■■■■■ 4.09
CKLF-206ENST00000526149 SUPT5HO00267 1087 aaKnown RBP40.53■■■■■ 4.08
CKLF-206ENST00000526149 FANCD2Q9BXW9 1451 aa40.5■■■■■ 4.07
CKLF-206ENST00000526149 CEP164Q9UPV0 1460 aa40.41■■■■■ 4.06
CKLF-206ENST00000526149 MRC2Q9UBG0 1479 aa40.39■■■■■ 4.06
CKLF-206ENST00000526149 PRDM2Q13029 1718 aa40.28■■■■■ 4.04
CKLF-206ENST00000526149 WDR62O43379 1518 aa40.26■■■■■ 4.04
CKLF-206ENST00000526149 URB2Q14146 1524 aaKnown RBP40.14■■■■■ 4.02
CKLF-206ENST00000526149 TOPBP1Q92547 1522 aa39.85■■■■□ 3.97
CKLF-206ENST00000526149 ABCC8Q09428 1581 aa39.77■■■■□ 3.96
CKLF-206ENST00000526149 DNMBPQ6XZF7 1577 aa39.76■■■■□ 3.95
CKLF-206ENST00000526149 IFT140Q96RY7 1462 aa39.59■■■■□ 3.93
CKLF-206ENST00000526149 DNAJC5Q9H3Z4 198 aa39.57■■■■□ 3.93
CKLF-206ENST00000526149 CUX1P39880 1505 aa39.54■■■■□ 3.92
CKLF-206ENST00000526149 POLA1P09884 1462 aaPredicted RBP39.51■■■■□ 3.92
CKLF-206ENST00000526149 ZNF608Q9ULD9 1512 aaPredicted RBP39.49■■■■□ 3.91
CKLF-206ENST00000526149 TARBP1Q13395 1621 aaKnown RBP39.42■■■■□ 3.9
CKLF-206ENST00000526149 FGD5Q6ZNL6 1462 aa39.4■■■■□ 3.9
CKLF-206ENST00000526149 RAD54L2Q9Y4B4 1467 aa39.38■■■■□ 3.9
CKLF-206ENST00000526149 SOGA1O94964 1423 aa39.35■■■■□ 3.89
CKLF-206ENST00000526149 AQRO60306 1485 aaKnown RBP eCLIP39.25■■■■□ 3.87
CKLF-206ENST00000526149 EIF4G3O43432 1585 aaKnown RBP39.25■■■■□ 3.87
CKLF-206ENST00000526149 WRNQ14191 1432 aaPredicted RBP eCLIP39.23■■■■□ 3.87
CKLF-206ENST00000526149 TDRD9Q8NDG6 1382 aaKnown RBP39.18■■■■□ 3.86
CKLF-206ENST00000526149 SYNJ1O43426 1573 aa39.16■■■■□ 3.86
CKLF-206ENST00000526149 TOP2BQ02880 1626 aa39.14■■■■□ 3.86
CKLF-206ENST00000526149 BIVM-ERCC5R4GMW8 1640 aa39.12■■■■□ 3.85
CKLF-206ENST00000526149 WDR97A6NE52 1622 aa39.03■■■■□ 3.84
CKLF-206ENST00000526149 ABCA10Q8WWZ4 1543 aa39.01■■■■□ 3.84
CKLF-206ENST00000526149 OSCARQ8IYS5 282 aa38.98■■■■□ 3.83
CKLF-206ENST00000526149 GRIN2BQ13224 1484 aa38.87■■■■□ 3.81
CKLF-206ENST00000526149 GAPVD1Q14C86 1478 aa38.87■■■■□ 3.81
CKLF-206ENST00000526149 SNAPC4Q5SXM2 1469 aa38.85■■■■□ 3.81
CKLF-206ENST00000526149 ABCA5Q8WWZ7 1642 aa38.84■■■■□ 3.81
CKLF-206ENST00000526149 MAGI1Q96QZ7 1491 aaPredicted RBP38.76■■■■□ 3.8
CKLF-206ENST00000526149 CHD1O14646 1710 aa38.75■■■■□ 3.79
CKLF-206ENST00000526149 FBLN2P98095 1184 aa38.75■■■■□ 3.79
CKLF-206ENST00000526149 PBRM1Q86U86 1689 aa38.74■■■■□ 3.79
CKLF-206ENST00000526149 SYNJ2O15056 1496 aa38.63■■■■□ 3.77
CKLF-206ENST00000526149 CHMP7Q8WUX9 453 aaPredicted RBP38.63■■■■□ 3.77
CKLF-206ENST00000526149 ERICH3Q5RHP9 1530 aa38.51■■■■□ 3.76
CKLF-206ENST00000526149 ADAMTS12P58397 1594 aa38.47■■■■□ 3.75
CKLF-206ENST00000526149 FHAD1B1AJZ9 1412 aa38.43■■■■□ 3.74
CKLF-206ENST00000526149 KIF27Q86VH2 1401 aa38.39■■■■□ 3.74
CKLF-206ENST00000526149 CLASP1Q7Z460 1538 aa38.39■■■■□ 3.74
CKLF-206ENST00000526149 GRIN2AQ12879 1464 aa38.38■■■■□ 3.73
CKLF-206ENST00000526149 RIMBP3CA6NJZ7 1639 aa38.34■■■■□ 3.73
CKLF-206ENST00000526149 RIMBP3BA6NNM3 1639 aa38.34■■■■□ 3.73
CKLF-206ENST00000526149 RIMBP3Q9UFD9 1639 aa38.34■■■■□ 3.73
CKLF-206ENST00000526149 IGF1RP08069 1367 aa38.34■■■■□ 3.73
CKLF-206ENST00000526149 ARHGEF11O15085 1522 aa38.34■■■■□ 3.73
CKLF-206ENST00000526149 NUP160Q12769 1436 aa38.24■■■■□ 3.71
CKLF-206ENST00000526149 TRIM41Q8WV44 630 aa38.24■■■■□ 3.71
CKLF-206ENST00000526149 CEP170Q5SW79 1584 aa38.21■■■■□ 3.71
CKLF-206ENST00000526149 RUSC2Q8N2Y8 1516 aa38.14■■■■□ 3.7
CKLF-206ENST00000526149 CUL7Q14999 1698 aa38.1■■■■□ 3.69
CKLF-206ENST00000526149 CARMIL1Q5VZK9 1371 aa38.06■■■■□ 3.68
CKLF-206ENST00000526149 ARAP1Q96P48 1450 aa38.06■■■■□ 3.68
CKLF-206ENST00000526149 CYB5RLQ6IPT4 315 aa38.02■■■■□ 3.68
CKLF-206ENST00000526149 SHROOM2Q13796 1616 aa37.93■■■■□ 3.66
CKLF-206ENST00000526149 ERCC6L2Q5T890 1561 aa37.9■■■■□ 3.66
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms