RNA–Protein interactions for RNA: ENST00000525957.1

ME3-204, Transcript of malic enzyme 3, humanhuman

TSL 3

Gene ME3, Length 619 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ME3-204ENST00000525957 NISCHQ9Y2I1 1504 aa38.95■■■■□ 3.83
ME3-204ENST00000525957 ABCC9O60706 1549 aa35.11■■■■□ 3.21
ME3-204ENST00000525957 CCDC180Q9P1Z9 1646 aa34.99■■■■□ 3.19
ME3-204ENST00000525957 RB1CC1Q8TDY2 1594 aa33.34■■■□□ 2.93
ME3-204ENST00000525957 NACADO15069 1562 aa33.06■■■□□ 2.88
ME3-204ENST00000525957 DCAF8L2P0C7V8 631 aa32.98■■■□□ 2.87
ME3-204ENST00000525957 DNAJC5BQ9UF47 199 aa32.89■■■□□ 2.86
ME3-204ENST00000525957 PABPN1Q86U42 306 aaKnown RBP eCLIP32.66■■■□□ 2.82
ME3-204ENST00000525957 UNC13AQ9UPW8 1703 aa32.64■■■□□ 2.82
ME3-204ENST00000525957 MYO15BQ96JP2 1530 aa32.5■■■□□ 2.79
ME3-204ENST00000525957 BICRAQ9NZM4 1560 aa32.36■■■□□ 2.77
ME3-204ENST00000525957 ZCCHC6Q5VYS8 1495 aaKnown RBP32.29■■■□□ 2.76
ME3-204ENST00000525957 DCAF1Q9Y4B6 1507 aa32.1■■■□□ 2.73
ME3-204ENST00000525957 SCRIBQ14160 1630 aa32■■■□□ 2.71
ME3-204ENST00000525957 SHROOM4Q9ULL8 1493 aa31.84■■■□□ 2.69
ME3-204ENST00000525957 CC2D2AQ9P2K1 1620 aa31.69■■■□□ 2.66
ME3-204ENST00000525957 CECR2Q9BXF3 1484 aa31.59■■■□□ 2.65
ME3-204ENST00000525957 EIF4G1Q04637 1599 aaKnown RBP31.59■■■□□ 2.65
ME3-204ENST00000525957 NCAPD3P42695 1498 aa30.48■■■□□ 2.47
ME3-204ENST00000525957 SMARCA4P51532 1647 aa30.44■■■□□ 2.46
ME3-204ENST00000525957 ATAD2BQ9ULI0 1458 aa30.44■■■□□ 2.46
ME3-204ENST00000525957 SMARCA2P51531 1590 aa30.37■■■□□ 2.45
ME3-204ENST00000525957 ERCC6Q03468 1493 aa30.33■■■□□ 2.45
ME3-204ENST00000525957 HMGXB3Q12766 1538 aa30.31■■■□□ 2.44
ME3-204ENST00000525957 BAZ1AQ9NRL2 1556 aaPredicted RBP30.25■■■□□ 2.43
ME3-204ENST00000525957 CUX2O14529 1486 aa30.19■■■□□ 2.42
ME3-204ENST00000525957 BAZ1BQ9UIG0 1483 aaKnown RBP30.19■■■□□ 2.42
ME3-204ENST00000525957 DNAJC5Q9H3Z4 198 aa30.17■■■□□ 2.42
ME3-204ENST00000525957 NESP48681 1621 aa30.14■■■□□ 2.42
ME3-204ENST00000525957 PEG3Q9GZU2 1588 aa30.07■■■□□ 2.4
ME3-204ENST00000525957 MROH2BQ7Z745 1585 aa30.06■■■□□ 2.4
ME3-204ENST00000525957 LAMC3Q9Y6N6 1575 aa29.86■■■□□ 2.37
ME3-204ENST00000525957 THOC2Q8NI27 1593 aaKnown RBP29.84■■■□□ 2.37
ME3-204ENST00000525957 KIF21AQ7Z4S6 1674 aa29.78■■■□□ 2.36
ME3-204ENST00000525957 WIZO95785 1651 aa29.73■■■□□ 2.35
ME3-204ENST00000525957 PDS5BQ9NTI5 1447 aa29.67■■■□□ 2.34
ME3-204ENST00000525957 CADPSQ9ULU8 1353 aa29.58■■■□□ 2.33
ME3-204ENST00000525957 MRC2Q9UBG0 1479 aa29.47■■■□□ 2.31
ME3-204ENST00000525957 WDR62O43379 1518 aa29.39■■■□□ 2.3
ME3-204ENST00000525957 RSF1Q96T23 1441 aaPredicted RBP29.37■■■□□ 2.29
ME3-204ENST00000525957 CEP164Q9UPV0 1460 aa29.36■■■□□ 2.29
ME3-204ENST00000525957 TOP2AP11388 1531 aaKnown RBP29.32■■■□□ 2.28
ME3-204ENST00000525957 FANCD2Q9BXW9 1451 aa29.31■■■□□ 2.28
ME3-204ENST00000525957 CFTRP13569 1480 aa29.23■■■□□ 2.27
ME3-204ENST00000525957 URB2Q14146 1524 aaKnown RBP29.08■■■□□ 2.25
ME3-204ENST00000525957 PRDM2Q13029 1718 aa29.03■■■□□ 2.24
ME3-204ENST00000525957 TRIM41Q8WV44 630 aa29■■■□□ 2.23
ME3-204ENST00000525957 CCDC88BA6NC98 1476 aa28.97■■■□□ 2.23
ME3-204ENST00000525957 OSCARQ8IYS5 282 aa28.77■■■□□ 2.2
ME3-204ENST00000525957 TOPBP1Q92547 1522 aa28.75■■■□□ 2.19
ME3-204ENST00000525957 ZNF608Q9ULD9 1512 aaPredicted RBP28.74■■■□□ 2.19
ME3-204ENST00000525957 IFT140Q96RY7 1462 aa28.72■■■□□ 2.19
ME3-204ENST00000525957 DNMBPQ6XZF7 1577 aa28.64■■■□□ 2.18
ME3-204ENST00000525957 EIF4G3O43432 1585 aaKnown RBP28.62■■■□□ 2.17
ME3-204ENST00000525957 ABCC8Q09428 1581 aa28.6■■■□□ 2.17
ME3-204ENST00000525957 RIMBP3CA6NJZ7 1639 aa28.51■■■□□ 2.15
ME3-204ENST00000525957 RIMBP3BA6NNM3 1639 aa28.51■■■□□ 2.15
ME3-204ENST00000525957 RIMBP3Q9UFD9 1639 aa28.51■■■□□ 2.15
ME3-204ENST00000525957 TARBP1Q13395 1621 aaKnown RBP28.48■■■□□ 2.15
ME3-204ENST00000525957 AQRO60306 1485 aaKnown RBP eCLIP28.46■■■□□ 2.15
ME3-204ENST00000525957 POLA1P09884 1462 aaPredicted RBP28.45■■■□□ 2.14
ME3-204ENST00000525957 CHD1O14646 1710 aa28.42■■■□□ 2.14
ME3-204ENST00000525957 ARHGEF11O15085 1522 aa28.4■■■□□ 2.14
ME3-204ENST00000525957 RAD54L2Q9Y4B4 1467 aa28.37■■■□□ 2.13
ME3-204ENST00000525957 FBLN2P98095 1184 aa28.32■■■□□ 2.12
ME3-204ENST00000525957 FGD5Q6ZNL6 1462 aa28.29■■■□□ 2.12
ME3-204ENST00000525957 SOGA1O94964 1423 aa28.29■■■□□ 2.12
ME3-204ENST00000525957 TDRD9Q8NDG6 1382 aaKnown RBP28.28■■■□□ 2.12
ME3-204ENST00000525957 CUX1P39880 1505 aa28.26■■■□□ 2.11
ME3-204ENST00000525957 SNAPC4Q5SXM2 1469 aa28.21■■■□□ 2.11
ME3-204ENST00000525957 CYB5RLQ6IPT4 315 aa28.17■■■□□ 2.1
ME3-204ENST00000525957 SUPT5HO00267 1087 aaKnown RBP28.14■■■□□ 2.1
ME3-204ENST00000525957 WDR97A6NE52 1622 aa28.14■■■□□ 2.09
ME3-204ENST00000525957 ARAP1Q96P48 1450 aa28.13■■■□□ 2.09
ME3-204ENST00000525957 GRIN2BQ13224 1484 aa28.06■■■□□ 2.08
ME3-204ENST00000525957 MAGI1Q96QZ7 1491 aaPredicted RBP28.06■■■□□ 2.08
ME3-204ENST00000525957 CHMP7Q8WUX9 453 aaPredicted RBP28.04■■■□□ 2.08
ME3-204ENST00000525957 PBRM1Q86U86 1689 aa28.03■■■□□ 2.08
ME3-204ENST00000525957 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
ME3-204ENST00000525957 SYNJ1O43426 1573 aa28.02■■■□□ 2.08
ME3-204ENST00000525957 SYNJ2O15056 1496 aa27.98■■■□□ 2.07
ME3-204ENST00000525957 GAPVD1Q14C86 1478 aa27.96■■■□□ 2.07
ME3-204ENST00000525957 ABCA5Q8WWZ7 1642 aa27.92■■■□□ 2.06
ME3-204ENST00000525957 TRHP20396 242 aaPredicted RBP27.92■■■□□ 2.06
ME3-204ENST00000525957 ABCA10Q8WWZ4 1543 aa27.92■■■□□ 2.06
ME3-204ENST00000525957 WRNQ14191 1432 aaPredicted RBP eCLIP27.8■■■□□ 2.04
ME3-204ENST00000525957 BIVM-ERCC5R4GMW8 1640 aa27.78■■■□□ 2.04
ME3-204ENST00000525957 TOP2BQ02880 1626 aa27.77■■■□□ 2.04
ME3-204ENST00000525957 ADAMTS12P58397 1594 aa27.74■■■□□ 2.03
ME3-204ENST00000525957 GRIN2AQ12879 1464 aa27.72■■■□□ 2.03
ME3-204ENST00000525957 CEP170Q5SW79 1584 aa27.66■■■□□ 2.02
ME3-204ENST00000525957 ERCC6L2Q5T890 1561 aa27.65■■■□□ 2.02
ME3-204ENST00000525957 NUP160Q12769 1436 aa27.59■■■□□ 2.01
ME3-204ENST00000525957 FHAD1B1AJZ9 1412 aa27.58■■■□□ 2.01
ME3-204ENST00000525957 ERICH3Q5RHP9 1530 aa27.56■■■□□ 2
ME3-204ENST00000525957 SHROOM2Q13796 1616 aa27.5■■□□□ 1.99
ME3-204ENST00000525957 PRG4Q92954 1404 aaPredicted RBP27.37■■□□□ 1.97
ME3-204ENST00000525957 RUSC2Q8N2Y8 1516 aa27.36■■□□□ 1.97
ME3-204ENST00000525957 JPH4Q96JJ6 628 aa27.28■■□□□ 1.96
ME3-204ENST00000525957 KIF27Q86VH2 1401 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms