RNA–Protein interactions for RNA: ENST00000525947.1

ROM1-203, Transcript of retinal outer segment membrane protein 1, humanhuman

APPRIS ALT2 TSL 3

Gene ROM1, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ROM1-203ENST00000525947 NISCHQ9Y2I1 1504 aa60.82■■■■■ 7.33
ROM1-203ENST00000525947 CCDC180Q9P1Z9 1646 aa54.52■■■■■ 6.32
ROM1-203ENST00000525947 ABCC9O60706 1549 aa54.11■■■■■ 6.25
ROM1-203ENST00000525947 RB1CC1Q8TDY2 1594 aa51.65■■■■■ 5.86
ROM1-203ENST00000525947 NACADO15069 1562 aa51.34■■■■■ 5.81
ROM1-203ENST00000525947 DCAF8L2P0C7V8 631 aa51.29■■■■■ 5.8
ROM1-203ENST00000525947 UNC13AQ9UPW8 1703 aa50.81■■■■■ 5.72
ROM1-203ENST00000525947 MYO15BQ96JP2 1530 aa50.63■■■■■ 5.7
ROM1-203ENST00000525947 ZCCHC6Q5VYS8 1495 aaKnown RBP50.46■■■■■ 5.67
ROM1-203ENST00000525947 PABPN1Q86U42 306 aaKnown RBP eCLIP50.42■■■■■ 5.66
ROM1-203ENST00000525947 DNAJC5BQ9UF47 199 aa50.36■■■■■ 5.65
ROM1-203ENST00000525947 DCAF1Q9Y4B6 1507 aa50.17■■■■■ 5.62
ROM1-203ENST00000525947 BICRAQ9NZM4 1560 aa50.17■■■■■ 5.62
ROM1-203ENST00000525947 SCRIBQ14160 1630 aa49.77■■■■■ 5.56
ROM1-203ENST00000525947 SHROOM4Q9ULL8 1493 aa49.31■■■■■ 5.48
ROM1-203ENST00000525947 CC2D2AQ9P2K1 1620 aa48.94■■■■■ 5.43
ROM1-203ENST00000525947 EIF4G1Q04637 1599 aaKnown RBP48.88■■■■■ 5.42
ROM1-203ENST00000525947 CECR2Q9BXF3 1484 aa48.63■■■■■ 5.38
ROM1-203ENST00000525947 SMARCA4P51532 1647 aa47.45■■■■■ 5.19
ROM1-203ENST00000525947 NCAPD3P42695 1498 aa47.31■■■■■ 5.16
ROM1-203ENST00000525947 ATAD2BQ9ULI0 1458 aa47.28■■■■■ 5.16
ROM1-203ENST00000525947 SMARCA2P51531 1590 aa47.2■■■■■ 5.15
ROM1-203ENST00000525947 BAZ1AQ9NRL2 1556 aaPredicted RBP47.2■■■■■ 5.15
ROM1-203ENST00000525947 HMGXB3Q12766 1538 aa47.06■■■■■ 5.12
ROM1-203ENST00000525947 MROH2BQ7Z745 1585 aa46.93■■■■■ 5.1
ROM1-203ENST00000525947 BAZ1BQ9UIG0 1483 aaKnown RBP46.89■■■■■ 5.1
ROM1-203ENST00000525947 PEG3Q9GZU2 1588 aa46.87■■■■■ 5.09
ROM1-203ENST00000525947 ERCC6Q03468 1493 aa46.66■■■■■ 5.06
ROM1-203ENST00000525947 NESP48681 1621 aa46.62■■■■■ 5.05
ROM1-203ENST00000525947 WIZO95785 1651 aa46.52■■■■■ 5.04
ROM1-203ENST00000525947 CUX2O14529 1486 aa46.36■■■■■ 5.01
ROM1-203ENST00000525947 LAMC3Q9Y6N6 1575 aa46.3■■■■■ 5
ROM1-203ENST00000525947 KIF21AQ7Z4S6 1674 aa46.2■■■■■ 4.99
ROM1-203ENST00000525947 THOC2Q8NI27 1593 aaKnown RBP46.07■■■■■ 4.97
ROM1-203ENST00000525947 RSF1Q96T23 1441 aaPredicted RBP46.02■■■■■ 4.96
ROM1-203ENST00000525947 PDS5BQ9NTI5 1447 aa45.94■■■■■ 4.94
ROM1-203ENST00000525947 CADPSQ9ULU8 1353 aa45.92■■■■■ 4.94
ROM1-203ENST00000525947 DNAJC5Q9H3Z4 198 aa45.88■■■■■ 4.94
ROM1-203ENST00000525947 TOP2AP11388 1531 aaKnown RBP45.8■■■■■ 4.92
ROM1-203ENST00000525947 MRC2Q9UBG0 1479 aa45.56■■■■■ 4.88
ROM1-203ENST00000525947 CEP164Q9UPV0 1460 aa45.49■■■■■ 4.87
ROM1-203ENST00000525947 CFTRP13569 1480 aa45.48■■■■■ 4.87
ROM1-203ENST00000525947 FANCD2Q9BXW9 1451 aa45.46■■■■■ 4.87
ROM1-203ENST00000525947 WDR62O43379 1518 aa45.45■■■■■ 4.87
ROM1-203ENST00000525947 PRDM2Q13029 1718 aa45.42■■■■■ 4.86
ROM1-203ENST00000525947 CCDC88BA6NC98 1476 aa45.28■■■■■ 4.84
ROM1-203ENST00000525947 URB2Q14146 1524 aaKnown RBP45.09■■■■■ 4.81
ROM1-203ENST00000525947 TOPBP1Q92547 1522 aa44.66■■■■■ 4.74
ROM1-203ENST00000525947 DNMBPQ6XZF7 1577 aa44.56■■■■■ 4.72
ROM1-203ENST00000525947 ABCC8Q09428 1581 aa44.52■■■■■ 4.72
ROM1-203ENST00000525947 IFT140Q96RY7 1462 aa44.51■■■■■ 4.72
ROM1-203ENST00000525947 ZNF608Q9ULD9 1512 aaPredicted RBP44.48■■■■■ 4.71
ROM1-203ENST00000525947 SUPT5HO00267 1087 aaKnown RBP44.4■■■■■ 4.7
ROM1-203ENST00000525947 EIF4G3O43432 1585 aaKnown RBP44.32■■■■■ 4.69
ROM1-203ENST00000525947 OSCARQ8IYS5 282 aa44.32■■■■■ 4.69
ROM1-203ENST00000525947 TARBP1Q13395 1621 aaKnown RBP44.3■■■■■ 4.68
ROM1-203ENST00000525947 POLA1P09884 1462 aaPredicted RBP44.21■■■■■ 4.67
ROM1-203ENST00000525947 TRIM41Q8WV44 630 aa44.18■■■■■ 4.66
ROM1-203ENST00000525947 AQRO60306 1485 aaKnown RBP eCLIP44.12■■■■■ 4.65
ROM1-203ENST00000525947 RAD54L2Q9Y4B4 1467 aa44.1■■■■■ 4.65
ROM1-203ENST00000525947 CHD1O14646 1710 aa44.08■■■■■ 4.65
ROM1-203ENST00000525947 CUX1P39880 1505 aa44.07■■■■■ 4.65
ROM1-203ENST00000525947 FGD5Q6ZNL6 1462 aa44.03■■■■■ 4.64
ROM1-203ENST00000525947 SOGA1O94964 1423 aa44.01■■■■■ 4.64
ROM1-203ENST00000525947 TDRD9Q8NDG6 1382 aaKnown RBP43.89■■■■■ 4.62
ROM1-203ENST00000525947 RIMBP3CA6NJZ7 1639 aa43.88■■■■■ 4.61
ROM1-203ENST00000525947 RIMBP3BA6NNM3 1639 aa43.88■■■■■ 4.61
ROM1-203ENST00000525947 RIMBP3Q9UFD9 1639 aa43.88■■■■■ 4.61
ROM1-203ENST00000525947 WDR97A6NE52 1622 aa43.82■■■■■ 4.61
ROM1-203ENST00000525947 FBLN2P98095 1184 aa43.79■■■■■ 4.6
ROM1-203ENST00000525947 PBRM1Q86U86 1689 aa43.69■■■■■ 4.58
ROM1-203ENST00000525947 SNAPC4Q5SXM2 1469 aa43.69■■■■■ 4.58
ROM1-203ENST00000525947 ARHGEF11O15085 1522 aa43.67■■■■■ 4.58
ROM1-203ENST00000525947 GRIN2BQ13224 1484 aa43.57■■■■■ 4.56
ROM1-203ENST00000525947 BIVM-ERCC5R4GMW8 1640 aa43.54■■■■■ 4.56
ROM1-203ENST00000525947 MAGI1Q96QZ7 1491 aaPredicted RBP43.52■■■■■ 4.56
ROM1-203ENST00000525947 GAPVD1Q14C86 1478 aa43.51■■■■■ 4.56
ROM1-203ENST00000525947 ABCA10Q8WWZ4 1543 aa43.49■■■■■ 4.55
ROM1-203ENST00000525947 ABCA5Q8WWZ7 1642 aa43.49■■■■■ 4.55
ROM1-203ENST00000525947 SYNJ1O43426 1573 aa43.48■■■■■ 4.55
ROM1-203ENST00000525947 TOP2BQ02880 1626 aa43.48■■■■■ 4.55
ROM1-203ENST00000525947 CHMP7Q8WUX9 453 aaPredicted RBP43.46■■■■■ 4.55
ROM1-203ENST00000525947 WRNQ14191 1432 aaPredicted RBP eCLIP43.41■■■■■ 4.54
ROM1-203ENST00000525947 SYNJ2O15056 1496 aa43.38■■■■■ 4.53
ROM1-203ENST00000525947 CLASP1Q7Z460 1538 aa43.35■■■■■ 4.53
ROM1-203ENST00000525947 CYB5RLQ6IPT4 315 aa43.32■■■■■ 4.53
ROM1-203ENST00000525947 ARAP1Q96P48 1450 aa43.26■■■■■ 4.52
ROM1-203ENST00000525947 ADAMTS12P58397 1594 aa43.13■■■■■ 4.5
ROM1-203ENST00000525947 GRIN2AQ12879 1464 aa43.03■■■■■ 4.48
ROM1-203ENST00000525947 ERICH3Q5RHP9 1530 aa42.97■■■■■ 4.47
ROM1-203ENST00000525947 CEP170Q5SW79 1584 aa42.94■■■■■ 4.46
ROM1-203ENST00000525947 FHAD1B1AJZ9 1412 aa42.91■■■■■ 4.46
ROM1-203ENST00000525947 NUP160Q12769 1436 aa42.82■■■■■ 4.45
ROM1-203ENST00000525947 ERCC6L2Q5T890 1561 aa42.8■■■■■ 4.44
ROM1-203ENST00000525947 TRHP20396 242 aaPredicted RBP42.76■■■■■ 4.44
ROM1-203ENST00000525947 SHROOM2Q13796 1616 aa42.71■■■■■ 4.43
ROM1-203ENST00000525947 KIF27Q86VH2 1401 aa42.54■■■■■ 4.4
ROM1-203ENST00000525947 CUL7Q14999 1698 aa42.53■■■■■ 4.4
ROM1-203ENST00000525947 RUSC2Q8N2Y8 1516 aa42.51■■■■■ 4.4
ROM1-203ENST00000525947 IGF1RP08069 1367 aa42.46■■■■■ 4.39
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms