RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 NISCHQ9Y2I1 1504 aa28.69■■■□□ 2.18
HIF3A-209ENST00000525854 CCDC180Q9P1Z9 1646 aa25.63■■□□□ 1.69
HIF3A-209ENST00000525854 ABCC9O60706 1549 aa25.42■■□□□ 1.66
HIF3A-209ENST00000525854 RB1CC1Q8TDY2 1594 aa24.32■■□□□ 1.48
HIF3A-209ENST00000525854 NACADO15069 1562 aa24.22■■□□□ 1.47
HIF3A-209ENST00000525854 DCAF8L2P0C7V8 631 aa24.16■■□□□ 1.46
HIF3A-209ENST00000525854 MYO15BQ96JP2 1530 aa23.98■■□□□ 1.43
HIF3A-209ENST00000525854 ZCCHC6Q5VYS8 1495 aaKnown RBP23.82■■□□□ 1.4
HIF3A-209ENST00000525854 DCAF1Q9Y4B6 1507 aa23.74■■□□□ 1.39
HIF3A-209ENST00000525854 PABPN1Q86U42 306 aaKnown RBP eCLIP23.73■■□□□ 1.39
HIF3A-209ENST00000525854 DNAJC5BQ9UF47 199 aa23.64■■□□□ 1.37
HIF3A-209ENST00000525854 UNC13AQ9UPW8 1703 aa23.64■■□□□ 1.37
HIF3A-209ENST00000525854 BICRAQ9NZM4 1560 aa23.54■■□□□ 1.36
HIF3A-209ENST00000525854 SHROOM4Q9ULL8 1493 aa23.35■■□□□ 1.33
HIF3A-209ENST00000525854 SCRIBQ14160 1630 aa23.34■■□□□ 1.33
HIF3A-209ENST00000525854 EIF4G1Q04637 1599 aaKnown RBP22.97■■□□□ 1.27
HIF3A-209ENST00000525854 CC2D2AQ9P2K1 1620 aa22.96■■□□□ 1.27
HIF3A-209ENST00000525854 CECR2Q9BXF3 1484 aa22.91■■□□□ 1.26
HIF3A-209ENST00000525854 NCAPD3P42695 1498 aa22.36■■□□□ 1.17
HIF3A-209ENST00000525854 ATAD2BQ9ULI0 1458 aa22.31■■□□□ 1.16
HIF3A-209ENST00000525854 SMARCA4P51532 1647 aa22.31■■□□□ 1.16
HIF3A-209ENST00000525854 SMARCA2P51531 1590 aa22.27■■□□□ 1.16
HIF3A-209ENST00000525854 BAZ1AQ9NRL2 1556 aaPredicted RBP22.27■■□□□ 1.16
HIF3A-209ENST00000525854 HMGXB3Q12766 1538 aa22.2■■□□□ 1.14
HIF3A-209ENST00000525854 BAZ1BQ9UIG0 1483 aaKnown RBP22.11■■□□□ 1.13
HIF3A-209ENST00000525854 PEG3Q9GZU2 1588 aa22.11■■□□□ 1.13
HIF3A-209ENST00000525854 MROH2BQ7Z745 1585 aa22.08■■□□□ 1.13
HIF3A-209ENST00000525854 ERCC6Q03468 1493 aa21.98■■□□□ 1.11
HIF3A-209ENST00000525854 NESP48681 1621 aa21.88■■□□□ 1.09
HIF3A-209ENST00000525854 CUX2O14529 1486 aa21.86■■□□□ 1.09
HIF3A-209ENST00000525854 WIZO95785 1651 aa21.79■■□□□ 1.08
HIF3A-209ENST00000525854 LAMC3Q9Y6N6 1575 aa21.79■■□□□ 1.08
HIF3A-209ENST00000525854 RSF1Q96T23 1441 aaPredicted RBP21.74■■□□□ 1.07
HIF3A-209ENST00000525854 PDS5BQ9NTI5 1447 aa21.72■■□□□ 1.07
HIF3A-209ENST00000525854 CADPSQ9ULU8 1353 aa21.71■■□□□ 1.07
HIF3A-209ENST00000525854 DNAJC5Q9H3Z4 198 aa21.6■■□□□ 1.05
HIF3A-209ENST00000525854 THOC2Q8NI27 1593 aaKnown RBP21.6■■□□□ 1.05
HIF3A-209ENST00000525854 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
HIF3A-209ENST00000525854 KIF21AQ7Z4S6 1674 aa21.56■■□□□ 1.04
HIF3A-209ENST00000525854 CFTRP13569 1480 aa21.49■■□□□ 1.03
HIF3A-209ENST00000525854 MRC2Q9UBG0 1479 aa21.48■■□□□ 1.03
HIF3A-209ENST00000525854 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.02
HIF3A-209ENST00000525854 FANCD2Q9BXW9 1451 aa21.44■■□□□ 1.02
HIF3A-209ENST00000525854 WDR62O43379 1518 aa21.39■■□□□ 1.02
HIF3A-209ENST00000525854 CCDC88BA6NC98 1476 aa21.35■■□□□ 1.01
HIF3A-209ENST00000525854 URB2Q14146 1524 aaKnown RBP21.21■□□□□ 0.99
HIF3A-209ENST00000525854 PRDM2Q13029 1718 aa21.2■□□□□ 0.98
HIF3A-209ENST00000525854 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
HIF3A-209ENST00000525854 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
HIF3A-209ENST00000525854 IFT140Q96RY7 1462 aa21.02■□□□□ 0.96
HIF3A-209ENST00000525854 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
HIF3A-209ENST00000525854 SUPT5HO00267 1087 aaKnown RBP20.97■□□□□ 0.95
HIF3A-209ENST00000525854 OSCARQ8IYS5 282 aa20.93■□□□□ 0.94
HIF3A-209ENST00000525854 ZNF608Q9ULD9 1512 aaPredicted RBP20.91■□□□□ 0.94
HIF3A-209ENST00000525854 POLA1P09884 1462 aaPredicted RBP20.84■□□□□ 0.93
HIF3A-209ENST00000525854 TARBP1Q13395 1621 aaKnown RBP20.8■□□□□ 0.92
HIF3A-209ENST00000525854 EIF4G3O43432 1585 aaKnown RBP20.8■□□□□ 0.92
HIF3A-209ENST00000525854 SOGA1O94964 1423 aa20.78■□□□□ 0.92
HIF3A-209ENST00000525854 AQRO60306 1485 aaKnown RBP eCLIP20.78■□□□□ 0.92
HIF3A-209ENST00000525854 RAD54L2Q9Y4B4 1467 aa20.75■□□□□ 0.91
HIF3A-209ENST00000525854 CUX1P39880 1505 aa20.74■□□□□ 0.91
HIF3A-209ENST00000525854 TRIM41Q8WV44 630 aa20.74■□□□□ 0.91
HIF3A-209ENST00000525854 FGD5Q6ZNL6 1462 aa20.74■□□□□ 0.91
HIF3A-209ENST00000525854 TDRD9Q8NDG6 1382 aaKnown RBP20.7■□□□□ 0.9
HIF3A-209ENST00000525854 WDR97A6NE52 1622 aa20.66■□□□□ 0.9
HIF3A-209ENST00000525854 FBLN2P98095 1184 aa20.64■□□□□ 0.89
HIF3A-209ENST00000525854 GRIN2BQ13224 1484 aa20.58■□□□□ 0.89
HIF3A-209ENST00000525854 SNAPC4Q5SXM2 1469 aa20.56■□□□□ 0.88
HIF3A-209ENST00000525854 CHD1O14646 1710 aa20.56■□□□□ 0.88
HIF3A-209ENST00000525854 MAGI1Q96QZ7 1491 aaPredicted RBP20.56■□□□□ 0.88
HIF3A-209ENST00000525854 CHMP7Q8WUX9 453 aaPredicted RBP20.54■□□□□ 0.88
HIF3A-209ENST00000525854 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
HIF3A-209ENST00000525854 ARHGEF11O15085 1522 aa20.53■□□□□ 0.88
HIF3A-209ENST00000525854 ABCA10Q8WWZ4 1543 aa20.53■□□□□ 0.88
HIF3A-209ENST00000525854 RIMBP3CA6NJZ7 1639 aa20.53■□□□□ 0.88
HIF3A-209ENST00000525854 RIMBP3BA6NNM3 1639 aa20.53■□□□□ 0.88
HIF3A-209ENST00000525854 RIMBP3Q9UFD9 1639 aa20.53■□□□□ 0.88
HIF3A-209ENST00000525854 GAPVD1Q14C86 1478 aa20.52■□□□□ 0.88
HIF3A-209ENST00000525854 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
HIF3A-209ENST00000525854 SYNJ2O15056 1496 aa20.48■□□□□ 0.87
HIF3A-209ENST00000525854 BIVM-ERCC5R4GMW8 1640 aa20.45■□□□□ 0.86
HIF3A-209ENST00000525854 ABCA5Q8WWZ7 1642 aa20.44■□□□□ 0.86
HIF3A-209ENST00000525854 SYNJ1O43426 1573 aa20.43■□□□□ 0.86
HIF3A-209ENST00000525854 PBRM1Q86U86 1689 aa20.42■□□□□ 0.86
HIF3A-209ENST00000525854 CYB5RLQ6IPT4 315 aa20.41■□□□□ 0.86
HIF3A-209ENST00000525854 CLASP1Q7Z460 1538 aa20.37■□□□□ 0.85
HIF3A-209ENST00000525854 ARAP1Q96P48 1450 aa20.33■□□□□ 0.85
HIF3A-209ENST00000525854 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
HIF3A-209ENST00000525854 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
HIF3A-209ENST00000525854 ERICH3Q5RHP9 1530 aa20.28■□□□□ 0.84
HIF3A-209ENST00000525854 ADAMTS12P58397 1594 aa20.28■□□□□ 0.84
HIF3A-209ENST00000525854 NUP160Q12769 1436 aa20.22■□□□□ 0.83
HIF3A-209ENST00000525854 CEP170Q5SW79 1584 aa20.17■□□□□ 0.82
HIF3A-209ENST00000525854 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
HIF3A-209ENST00000525854 TRHP20396 242 aaPredicted RBP20.12■□□□□ 0.81
HIF3A-209ENST00000525854 IGF1RP08069 1367 aa20.08■□□□□ 0.81
HIF3A-209ENST00000525854 SHROOM2Q13796 1616 aa20.06■□□□□ 0.8
HIF3A-209ENST00000525854 JPH4Q96JJ6 628 aa20.05■□□□□ 0.8
HIF3A-209ENST00000525854 ERCC6L2Q5T890 1561 aa20.04■□□□□ 0.8
HIF3A-209ENST00000525854 PRG4Q92954 1404 aaPredicted RBP20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms