RNA–Protein interactions for RNA: ENST00000525617.2

LRRK1-204, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 5

Gene LRRK1, Length 614 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-204ENST00000525617 NISCHQ9Y2I1 1504 aa34.97■■■■□ 3.19
LRRK1-204ENST00000525617 CCDC180Q9P1Z9 1646 aa31.15■■■□□ 2.58
LRRK1-204ENST00000525617 ABCC9O60706 1549 aa30.57■■■□□ 2.48
LRRK1-204ENST00000525617 RB1CC1Q8TDY2 1594 aa29.39■■■□□ 2.29
LRRK1-204ENST00000525617 DCAF8L2P0C7V8 631 aa29.36■■■□□ 2.29
LRRK1-204ENST00000525617 NACADO15069 1562 aa29.32■■■□□ 2.28
LRRK1-204ENST00000525617 ZCCHC6Q5VYS8 1495 aaKnown RBP29.1■■■□□ 2.25
LRRK1-204ENST00000525617 MYO15BQ96JP2 1530 aa29.1■■■□□ 2.25
LRRK1-204ENST00000525617 DCAF1Q9Y4B6 1507 aa28.94■■■□□ 2.22
LRRK1-204ENST00000525617 UNC13AQ9UPW8 1703 aa28.67■■■□□ 2.18
LRRK1-204ENST00000525617 PABPN1Q86U42 306 aaKnown RBP eCLIP28.56■■■□□ 2.16
LRRK1-204ENST00000525617 BICRAQ9NZM4 1560 aa28.43■■■□□ 2.14
LRRK1-204ENST00000525617 SCRIBQ14160 1630 aa28.4■■■□□ 2.14
LRRK1-204ENST00000525617 SHROOM4Q9ULL8 1493 aa28.18■■■□□ 2.1
LRRK1-204ENST00000525617 DNAJC5BQ9UF47 199 aa28.1■■■□□ 2.09
LRRK1-204ENST00000525617 EIF4G1Q04637 1599 aaKnown RBP27.72■■■□□ 2.03
LRRK1-204ENST00000525617 CC2D2AQ9P2K1 1620 aa27.63■■■□□ 2.01
LRRK1-204ENST00000525617 CECR2Q9BXF3 1484 aa27.48■■□□□ 1.99
LRRK1-204ENST00000525617 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
LRRK1-204ENST00000525617 BAZ1AQ9NRL2 1556 aaPredicted RBP27.14■■□□□ 1.94
LRRK1-204ENST00000525617 NCAPD3P42695 1498 aa27.04■■□□□ 1.92
LRRK1-204ENST00000525617 SMARCA2P51531 1590 aa27.03■■□□□ 1.92
LRRK1-204ENST00000525617 ATAD2BQ9ULI0 1458 aa27.03■■□□□ 1.92
LRRK1-204ENST00000525617 MROH2BQ7Z745 1585 aa26.94■■□□□ 1.9
LRRK1-204ENST00000525617 HMGXB3Q12766 1538 aa26.9■■□□□ 1.9
LRRK1-204ENST00000525617 PEG3Q9GZU2 1588 aa26.88■■□□□ 1.89
LRRK1-204ENST00000525617 BAZ1BQ9UIG0 1483 aaKnown RBP26.84■■□□□ 1.89
LRRK1-204ENST00000525617 WIZO95785 1651 aa26.66■■□□□ 1.86
LRRK1-204ENST00000525617 RSF1Q96T23 1441 aaPredicted RBP26.61■■□□□ 1.85
LRRK1-204ENST00000525617 NESP48681 1621 aa26.4■■□□□ 1.82
LRRK1-204ENST00000525617 ERCC6Q03468 1493 aa26.4■■□□□ 1.82
LRRK1-204ENST00000525617 TOP2AP11388 1531 aaKnown RBP26.37■■□□□ 1.81
LRRK1-204ENST00000525617 LAMC3Q9Y6N6 1575 aa26.37■■□□□ 1.81
LRRK1-204ENST00000525617 CADPSQ9ULU8 1353 aa26.26■■□□□ 1.79
LRRK1-204ENST00000525617 PDS5BQ9NTI5 1447 aa26.21■■□□□ 1.79
LRRK1-204ENST00000525617 CUX2O14529 1486 aa26.12■■□□□ 1.77
LRRK1-204ENST00000525617 KIF21AQ7Z4S6 1674 aa26.1■■□□□ 1.77
LRRK1-204ENST00000525617 CFTRP13569 1480 aa26.07■■□□□ 1.76
LRRK1-204ENST00000525617 CCDC88BA6NC98 1476 aa26.06■■□□□ 1.76
LRRK1-204ENST00000525617 THOC2Q8NI27 1593 aaKnown RBP26.01■■□□□ 1.75
LRRK1-204ENST00000525617 FANCD2Q9BXW9 1451 aa25.96■■□□□ 1.75
LRRK1-204ENST00000525617 CEP164Q9UPV0 1460 aa25.95■■□□□ 1.74
LRRK1-204ENST00000525617 SUPT5HO00267 1087 aaKnown RBP25.93■■□□□ 1.74
LRRK1-204ENST00000525617 MRC2Q9UBG0 1479 aa25.91■■□□□ 1.74
LRRK1-204ENST00000525617 PRDM2Q13029 1718 aa25.88■■□□□ 1.73
LRRK1-204ENST00000525617 WDR62O43379 1518 aa25.82■■□□□ 1.72
LRRK1-204ENST00000525617 URB2Q14146 1524 aaKnown RBP25.68■■□□□ 1.7
LRRK1-204ENST00000525617 ABCC8Q09428 1581 aa25.56■■□□□ 1.68
LRRK1-204ENST00000525617 TOPBP1Q92547 1522 aa25.53■■□□□ 1.68
LRRK1-204ENST00000525617 DNMBPQ6XZF7 1577 aa25.49■■□□□ 1.67
LRRK1-204ENST00000525617 DNAJC5Q9H3Z4 198 aa25.43■■□□□ 1.66
LRRK1-204ENST00000525617 IFT140Q96RY7 1462 aa25.4■■□□□ 1.66
LRRK1-204ENST00000525617 POLA1P09884 1462 aaPredicted RBP25.29■■□□□ 1.64
LRRK1-204ENST00000525617 CUX1P39880 1505 aa25.27■■□□□ 1.64
LRRK1-204ENST00000525617 ZNF608Q9ULD9 1512 aaPredicted RBP25.26■■□□□ 1.63
LRRK1-204ENST00000525617 TARBP1Q13395 1621 aaKnown RBP25.23■■□□□ 1.63
LRRK1-204ENST00000525617 FGD5Q6ZNL6 1462 aa25.23■■□□□ 1.63
LRRK1-204ENST00000525617 SOGA1O94964 1423 aa25.23■■□□□ 1.63
LRRK1-204ENST00000525617 RAD54L2Q9Y4B4 1467 aa25.18■■□□□ 1.62
LRRK1-204ENST00000525617 EIF4G3O43432 1585 aaKnown RBP25.17■■□□□ 1.62
LRRK1-204ENST00000525617 AQRO60306 1485 aaKnown RBP eCLIP25.13■■□□□ 1.61
LRRK1-204ENST00000525617 WRNQ14191 1432 aaPredicted RBP eCLIP25.12■■□□□ 1.61
LRRK1-204ENST00000525617 TDRD9Q8NDG6 1382 aaKnown RBP25.08■■□□□ 1.61
LRRK1-204ENST00000525617 OSCARQ8IYS5 282 aa25.07■■□□□ 1.6
LRRK1-204ENST00000525617 WDR97A6NE52 1622 aa25.07■■□□□ 1.6
LRRK1-204ENST00000525617 TOP2BQ02880 1626 aa25.06■■□□□ 1.6
LRRK1-204ENST00000525617 BIVM-ERCC5R4GMW8 1640 aa25.05■■□□□ 1.6
LRRK1-204ENST00000525617 SYNJ1O43426 1573 aa25.02■■□□□ 1.6
LRRK1-204ENST00000525617 ABCA10Q8WWZ4 1543 aa24.98■■□□□ 1.59
LRRK1-204ENST00000525617 GRIN2BQ13224 1484 aa24.94■■□□□ 1.58
LRRK1-204ENST00000525617 GAPVD1Q14C86 1478 aa24.92■■□□□ 1.58
LRRK1-204ENST00000525617 FBLN2P98095 1184 aa24.92■■□□□ 1.58
LRRK1-204ENST00000525617 SNAPC4Q5SXM2 1469 aa24.89■■□□□ 1.58
LRRK1-204ENST00000525617 CHD1O14646 1710 aa24.88■■□□□ 1.57
LRRK1-204ENST00000525617 MAGI1Q96QZ7 1491 aaPredicted RBP24.88■■□□□ 1.57
LRRK1-204ENST00000525617 ABCA5Q8WWZ7 1642 aa24.87■■□□□ 1.57
LRRK1-204ENST00000525617 PBRM1Q86U86 1689 aa24.86■■□□□ 1.57
LRRK1-204ENST00000525617 CHMP7Q8WUX9 453 aaPredicted RBP24.83■■□□□ 1.57
LRRK1-204ENST00000525617 SYNJ2O15056 1496 aa24.78■■□□□ 1.56
LRRK1-204ENST00000525617 ERICH3Q5RHP9 1530 aa24.69■■□□□ 1.54
LRRK1-204ENST00000525617 ADAMTS12P58397 1594 aa24.64■■□□□ 1.54
LRRK1-204ENST00000525617 FHAD1B1AJZ9 1412 aa24.63■■□□□ 1.53
LRRK1-204ENST00000525617 KIF27Q86VH2 1401 aa24.62■■□□□ 1.53
LRRK1-204ENST00000525617 RIMBP3CA6NJZ7 1639 aa24.61■■□□□ 1.53
LRRK1-204ENST00000525617 RIMBP3BA6NNM3 1639 aa24.61■■□□□ 1.53
LRRK1-204ENST00000525617 RIMBP3Q9UFD9 1639 aa24.61■■□□□ 1.53
LRRK1-204ENST00000525617 ARHGEF11O15085 1522 aa24.61■■□□□ 1.53
LRRK1-204ENST00000525617 GRIN2AQ12879 1464 aa24.6■■□□□ 1.53
LRRK1-204ENST00000525617 TRIM41Q8WV44 630 aa24.59■■□□□ 1.53
LRRK1-204ENST00000525617 CLASP1Q7Z460 1538 aa24.59■■□□□ 1.53
LRRK1-204ENST00000525617 IGF1RP08069 1367 aa24.5■■□□□ 1.51
LRRK1-204ENST00000525617 NUP160Q12769 1436 aa24.48■■□□□ 1.51
LRRK1-204ENST00000525617 CEP170Q5SW79 1584 aa24.46■■□□□ 1.51
LRRK1-204ENST00000525617 CUL7Q14999 1698 aa24.46■■□□□ 1.51
LRRK1-204ENST00000525617 CYB5RLQ6IPT4 315 aa24.43■■□□□ 1.5
LRRK1-204ENST00000525617 ARAP1Q96P48 1450 aa24.38■■□□□ 1.49
LRRK1-204ENST00000525617 CARMIL1Q5VZK9 1371 aa24.38■■□□□ 1.49
LRRK1-204ENST00000525617 RUSC2Q8N2Y8 1516 aa24.31■■□□□ 1.48
LRRK1-204ENST00000525617 SHROOM2Q13796 1616 aa24.3■■□□□ 1.48
LRRK1-204ENST00000525617 JPH4Q96JJ6 628 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms