RNA–Protein interactions for RNA: ENST00000525554.1

IFITM1-203, Transcript of interferon induced transmembrane protein 1, humanhuman

TSL 3

Gene IFITM1, Length 80 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFITM1-203ENST00000525554 NISCHQ9Y2I1 1504 aa34.2■■■■□ 3.06
IFITM1-203ENST00000525554 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
IFITM1-203ENST00000525554 ABCC9O60706 1549 aa30.54■■■□□ 2.48
IFITM1-203ENST00000525554 RB1CC1Q8TDY2 1594 aa29.18■■■□□ 2.26
IFITM1-203ENST00000525554 NACADO15069 1562 aa29.02■■■□□ 2.24
IFITM1-203ENST00000525554 DCAF8L2P0C7V8 631 aa28.82■■■□□ 2.2
IFITM1-203ENST00000525554 MYO15BQ96JP2 1530 aa28.71■■■□□ 2.19
IFITM1-203ENST00000525554 DNAJC5BQ9UF47 199 aa28.64■■■□□ 2.18
IFITM1-203ENST00000525554 PABPN1Q86U42 306 aaKnown RBP eCLIP28.47■■■□□ 2.15
IFITM1-203ENST00000525554 UNC13AQ9UPW8 1703 aa28.38■■■□□ 2.13
IFITM1-203ENST00000525554 ZCCHC6Q5VYS8 1495 aaKnown RBP28.33■■■□□ 2.13
IFITM1-203ENST00000525554 DCAF1Q9Y4B6 1507 aa28.33■■■□□ 2.13
IFITM1-203ENST00000525554 BICRAQ9NZM4 1560 aa28.26■■■□□ 2.11
IFITM1-203ENST00000525554 SHROOM4Q9ULL8 1493 aa28.04■■■□□ 2.08
IFITM1-203ENST00000525554 SCRIBQ14160 1630 aa27.82■■■□□ 2.04
IFITM1-203ENST00000525554 CC2D2AQ9P2K1 1620 aa27.6■■■□□ 2.01
IFITM1-203ENST00000525554 EIF4G1Q04637 1599 aaKnown RBP27.58■■■□□ 2.01
IFITM1-203ENST00000525554 CECR2Q9BXF3 1484 aa27.56■■■□□ 2
IFITM1-203ENST00000525554 NCAPD3P42695 1498 aa26.81■■□□□ 1.88
IFITM1-203ENST00000525554 ATAD2BQ9ULI0 1458 aa26.68■■□□□ 1.86
IFITM1-203ENST00000525554 SMARCA2P51531 1590 aa26.63■■□□□ 1.85
IFITM1-203ENST00000525554 SMARCA4P51532 1647 aa26.61■■□□□ 1.85
IFITM1-203ENST00000525554 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
IFITM1-203ENST00000525554 BAZ1AQ9NRL2 1556 aaPredicted RBP26.55■■□□□ 1.84
IFITM1-203ENST00000525554 PEG3Q9GZU2 1588 aa26.43■■□□□ 1.82
IFITM1-203ENST00000525554 CUX2O14529 1486 aa26.41■■□□□ 1.82
IFITM1-203ENST00000525554 ERCC6Q03468 1493 aa26.41■■□□□ 1.82
IFITM1-203ENST00000525554 BAZ1BQ9UIG0 1483 aaKnown RBP26.41■■□□□ 1.82
IFITM1-203ENST00000525554 DNAJC5Q9H3Z4 198 aa26.38■■□□□ 1.81
IFITM1-203ENST00000525554 MROH2BQ7Z745 1585 aa26.29■■□□□ 1.8
IFITM1-203ENST00000525554 NESP48681 1621 aa26.23■■□□□ 1.79
IFITM1-203ENST00000525554 LAMC3Q9Y6N6 1575 aa26.16■■□□□ 1.78
IFITM1-203ENST00000525554 PDS5BQ9NTI5 1447 aa26.05■■□□□ 1.76
IFITM1-203ENST00000525554 CADPSQ9ULU8 1353 aa25.99■■□□□ 1.75
IFITM1-203ENST00000525554 THOC2Q8NI27 1593 aaKnown RBP25.96■■□□□ 1.75
IFITM1-203ENST00000525554 WIZO95785 1651 aa25.94■■□□□ 1.74
IFITM1-203ENST00000525554 KIF21AQ7Z4S6 1674 aa25.87■■□□□ 1.73
IFITM1-203ENST00000525554 RSF1Q96T23 1441 aaPredicted RBP25.82■■□□□ 1.72
IFITM1-203ENST00000525554 MRC2Q9UBG0 1479 aa25.75■■□□□ 1.71
IFITM1-203ENST00000525554 CFTRP13569 1480 aa25.69■■□□□ 1.7
IFITM1-203ENST00000525554 WDR62O43379 1518 aa25.68■■□□□ 1.7
IFITM1-203ENST00000525554 TOP2AP11388 1531 aaKnown RBP25.68■■□□□ 1.7
IFITM1-203ENST00000525554 CEP164Q9UPV0 1460 aa25.66■■□□□ 1.7
IFITM1-203ENST00000525554 FANCD2Q9BXW9 1451 aa25.64■■□□□ 1.69
IFITM1-203ENST00000525554 CCDC88BA6NC98 1476 aa25.4■■□□□ 1.66
IFITM1-203ENST00000525554 URB2Q14146 1524 aaKnown RBP25.39■■□□□ 1.66
IFITM1-203ENST00000525554 PRDM2Q13029 1718 aa25.32■■□□□ 1.64
IFITM1-203ENST00000525554 OSCARQ8IYS5 282 aa25.26■■□□□ 1.63
IFITM1-203ENST00000525554 ABCC8Q09428 1581 aa25.21■■□□□ 1.63
IFITM1-203ENST00000525554 IFT140Q96RY7 1462 aa25.18■■□□□ 1.62
IFITM1-203ENST00000525554 TOPBP1Q92547 1522 aa25.15■■□□□ 1.62
IFITM1-203ENST00000525554 TRIM41Q8WV44 630 aa25.11■■□□□ 1.61
IFITM1-203ENST00000525554 DNMBPQ6XZF7 1577 aa25.05■■□□□ 1.6
IFITM1-203ENST00000525554 ZNF608Q9ULD9 1512 aaPredicted RBP25.05■■□□□ 1.6
IFITM1-203ENST00000525554 TARBP1Q13395 1621 aaKnown RBP24.9■■□□□ 1.58
IFITM1-203ENST00000525554 EIF4G3O43432 1585 aaKnown RBP24.89■■□□□ 1.58
IFITM1-203ENST00000525554 POLA1P09884 1462 aaPredicted RBP24.89■■□□□ 1.57
IFITM1-203ENST00000525554 AQRO60306 1485 aaKnown RBP eCLIP24.86■■□□□ 1.576e-16■■■■■ 35.8
IFITM1-203ENST00000525554 SOGA1O94964 1423 aa24.83■■□□□ 1.57
IFITM1-203ENST00000525554 RIMBP3CA6NJZ7 1639 aa24.77■■□□□ 1.56
IFITM1-203ENST00000525554 RIMBP3BA6NNM3 1639 aa24.77■■□□□ 1.56
IFITM1-203ENST00000525554 RIMBP3Q9UFD9 1639 aa24.77■■□□□ 1.56
IFITM1-203ENST00000525554 RAD54L2Q9Y4B4 1467 aa24.77■■□□□ 1.56
IFITM1-203ENST00000525554 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
IFITM1-203ENST00000525554 ARHGEF11O15085 1522 aa24.74■■□□□ 1.55
IFITM1-203ENST00000525554 TDRD9Q8NDG6 1382 aaKnown RBP24.73■■□□□ 1.55
IFITM1-203ENST00000525554 FGD5Q6ZNL6 1462 aa24.72■■□□□ 1.55
IFITM1-203ENST00000525554 FBLN2P98095 1184 aa24.7■■□□□ 1.54
IFITM1-203ENST00000525554 CUX1P39880 1505 aa24.7■■□□□ 1.54
IFITM1-203ENST00000525554 CHD1O14646 1710 aa24.67■■□□□ 1.54
IFITM1-203ENST00000525554 SUPT5HO00267 1087 aaKnown RBP24.67■■□□□ 1.54
IFITM1-203ENST00000525554 GRIN2BQ13224 1484 aa24.6■■□□□ 1.53
IFITM1-203ENST00000525554 MAGI1Q96QZ7 1491 aaPredicted RBP24.6■■□□□ 1.53
IFITM1-203ENST00000525554 CYB5RLQ6IPT4 315 aa24.6■■□□□ 1.53
IFITM1-203ENST00000525554 CHMP7Q8WUX9 453 aaPredicted RBP24.59■■□□□ 1.53
IFITM1-203ENST00000525554 SNAPC4Q5SXM2 1469 aa24.58■■□□□ 1.53
IFITM1-203ENST00000525554 SYNJ2O15056 1496 aa24.51■■□□□ 1.51
IFITM1-203ENST00000525554 GAPVD1Q14C86 1478 aa24.51■■□□□ 1.51
IFITM1-203ENST00000525554 ABCA10Q8WWZ4 1543 aa24.5■■□□□ 1.51
IFITM1-203ENST00000525554 SYNJ1O43426 1573 aa24.48■■□□□ 1.51
IFITM1-203ENST00000525554 ARAP1Q96P48 1450 aa24.48■■□□□ 1.51
IFITM1-203ENST00000525554 CLASP1Q7Z460 1538 aa24.46■■□□□ 1.51
IFITM1-203ENST00000525554 WRNQ14191 1432 aaPredicted RBP eCLIP24.44■■□□□ 1.5
IFITM1-203ENST00000525554 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.5
IFITM1-203ENST00000525554 PBRM1Q86U86 1689 aa24.39■■□□□ 1.49
IFITM1-203ENST00000525554 TOP2BQ02880 1626 aa24.35■■□□□ 1.49
IFITM1-203ENST00000525554 BIVM-ERCC5R4GMW8 1640 aa24.32■■□□□ 1.48
IFITM1-203ENST00000525554 TRHP20396 242 aaPredicted RBP24.3■■□□□ 1.48
IFITM1-203ENST00000525554 GRIN2AQ12879 1464 aa24.26■■□□□ 1.47
IFITM1-203ENST00000525554 FHAD1B1AJZ9 1412 aa24.23■■□□□ 1.47
IFITM1-203ENST00000525554 ERICH3Q5RHP9 1530 aa24.2■■□□□ 1.47
IFITM1-203ENST00000525554 NUP160Q12769 1436 aa24.19■■□□□ 1.46
IFITM1-203ENST00000525554 ADAMTS12P58397 1594 aa24.19■■□□□ 1.46
IFITM1-203ENST00000525554 CEP170Q5SW79 1584 aa24.11■■□□□ 1.45
IFITM1-203ENST00000525554 SHROOM2Q13796 1616 aa24.05■■□□□ 1.44
IFITM1-203ENST00000525554 ERCC6L2Q5T890 1561 aa24.01■■□□□ 1.43
IFITM1-203ENST00000525554 JPH4Q96JJ6 628 aa24■■□□□ 1.43
IFITM1-203ENST00000525554 PRG4Q92954 1404 aaPredicted RBP23.95■■□□□ 1.42
IFITM1-203ENST00000525554 KIF27Q86VH2 1401 aa23.93■■□□□ 1.42
IFITM1-203ENST00000525554 IGF1RP08069 1367 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms