RNA–Protein interactions for RNA: ENST00000524797.1

TRAPPC4-204, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,924 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-204ENST00000524797 NISCHQ9Y2I1 1504 aa27.64■■■□□ 2.01
TRAPPC4-204ENST00000524797 CCDC180Q9P1Z9 1646 aa24.74■■□□□ 1.55
TRAPPC4-204ENST00000524797 ABCC9O60706 1549 aa24.35■■□□□ 1.49
TRAPPC4-204ENST00000524797 RB1CC1Q8TDY2 1594 aa23.36■■□□□ 1.33
TRAPPC4-204ENST00000524797 NACADO15069 1562 aa23.27■■□□□ 1.32
TRAPPC4-204ENST00000524797 DCAF8L2P0C7V8 631 aa23.1■■□□□ 1.29
TRAPPC4-204ENST00000524797 MYO15BQ96JP2 1530 aa23.04■■□□□ 1.28
TRAPPC4-204ENST00000524797 ZCCHC6Q5VYS8 1495 aaKnown RBP22.98■■□□□ 1.27
TRAPPC4-204ENST00000524797 UNC13AQ9UPW8 1703 aa22.92■■□□□ 1.26
TRAPPC4-204ENST00000524797 DCAF1Q9Y4B6 1507 aa22.86■■□□□ 1.25
TRAPPC4-204ENST00000524797 PABPN1Q86U42 306 aaKnown RBP eCLIP22.69■■□□□ 1.22
TRAPPC4-204ENST00000524797 BICRAQ9NZM4 1560 aa22.68■■□□□ 1.22
TRAPPC4-204ENST00000524797 DNAJC5BQ9UF47 199 aa22.55■■□□□ 1.2
TRAPPC4-204ENST00000524797 SCRIBQ14160 1630 aa22.52■■□□□ 1.2
TRAPPC4-204ENST00000524797 SHROOM4Q9ULL8 1493 aa22.39■■□□□ 1.17
TRAPPC4-204ENST00000524797 EIF4G1Q04637 1599 aaKnown RBP22.07■■□□□ 1.12
TRAPPC4-204ENST00000524797 CC2D2AQ9P2K1 1620 aa22.06■■□□□ 1.12
TRAPPC4-204ENST00000524797 CECR2Q9BXF3 1484 aa21.91■■□□□ 1.1
TRAPPC4-204ENST00000524797 SMARCA4P51532 1647 aa21.53■■□□□ 1.04
TRAPPC4-204ENST00000524797 NCAPD3P42695 1498 aa21.44■■□□□ 1.02
TRAPPC4-204ENST00000524797 BAZ1AQ9NRL2 1556 aaPredicted RBP21.44■■□□□ 1.02
TRAPPC4-204ENST00000524797 ATAD2BQ9ULI0 1458 aa21.43■■□□□ 1.02
TRAPPC4-204ENST00000524797 SMARCA2P51531 1590 aa21.4■■□□□ 1.02
TRAPPC4-204ENST00000524797 HMGXB3Q12766 1538 aa21.35■■□□□ 1.01
TRAPPC4-204ENST00000524797 PEG3Q9GZU2 1588 aa21.31■■□□□ 1
TRAPPC4-204ENST00000524797 MROH2BQ7Z745 1585 aa21.3■■□□□ 1
TRAPPC4-204ENST00000524797 BAZ1BQ9UIG0 1483 aaKnown RBP21.24■□□□□ 0.99
TRAPPC4-204ENST00000524797 WIZO95785 1651 aa21.09■□□□□ 0.97
TRAPPC4-204ENST00000524797 NESP48681 1621 aa21.02■□□□□ 0.96
TRAPPC4-204ENST00000524797 ERCC6Q03468 1493 aa20.99■□□□□ 0.95
TRAPPC4-204ENST00000524797 RSF1Q96T23 1441 aaPredicted RBP20.94■□□□□ 0.94
TRAPPC4-204ENST00000524797 LAMC3Q9Y6N6 1575 aa20.94■□□□□ 0.94
TRAPPC4-204ENST00000524797 CUX2O14529 1486 aa20.89■□□□□ 0.93
TRAPPC4-204ENST00000524797 TOP2AP11388 1531 aaKnown RBP20.84■□□□□ 0.93
TRAPPC4-204ENST00000524797 KIF21AQ7Z4S6 1674 aa20.83■□□□□ 0.92
TRAPPC4-204ENST00000524797 THOC2Q8NI27 1593 aaKnown RBP20.8■□□□□ 0.92
TRAPPC4-204ENST00000524797 CADPSQ9ULU8 1353 aa20.79■□□□□ 0.92
TRAPPC4-204ENST00000524797 PDS5BQ9NTI5 1447 aa20.77■□□□□ 0.92
TRAPPC4-204ENST00000524797 CFTRP13569 1480 aa20.63■□□□□ 0.89
TRAPPC4-204ENST00000524797 MRC2Q9UBG0 1479 aa20.61■□□□□ 0.89
TRAPPC4-204ENST00000524797 PRDM2Q13029 1718 aa20.59■□□□□ 0.89
TRAPPC4-204ENST00000524797 CCDC88BA6NC98 1476 aa20.57■□□□□ 0.88
TRAPPC4-204ENST00000524797 FANCD2Q9BXW9 1451 aa20.57■□□□□ 0.88
TRAPPC4-204ENST00000524797 CEP164Q9UPV0 1460 aa20.57■□□□□ 0.88
TRAPPC4-204ENST00000524797 WDR62O43379 1518 aa20.56■□□□□ 0.88
TRAPPC4-204ENST00000524797 DNAJC5Q9H3Z4 198 aa20.47■□□□□ 0.87
TRAPPC4-204ENST00000524797 URB2Q14146 1524 aaKnown RBP20.4■□□□□ 0.86
TRAPPC4-204ENST00000524797 TOPBP1Q92547 1522 aa20.23■□□□□ 0.83
TRAPPC4-204ENST00000524797 DNMBPQ6XZF7 1577 aa20.21■□□□□ 0.83
TRAPPC4-204ENST00000524797 ABCC8Q09428 1581 aa20.2■□□□□ 0.82
TRAPPC4-204ENST00000524797 SUPT5HO00267 1087 aaKnown RBP20.19■□□□□ 0.82
TRAPPC4-204ENST00000524797 IFT140Q96RY7 1462 aa20.15■□□□□ 0.82
TRAPPC4-204ENST00000524797 ZNF608Q9ULD9 1512 aaPredicted RBP20.08■□□□□ 0.81
TRAPPC4-204ENST00000524797 TARBP1Q13395 1621 aaKnown RBP20.06■□□□□ 0.8
TRAPPC4-204ENST00000524797 POLA1P09884 1462 aaPredicted RBP20.03■□□□□ 0.8
TRAPPC4-204ENST00000524797 EIF4G3O43432 1585 aaKnown RBP20.03■□□□□ 0.8
TRAPPC4-204ENST00000524797 CUX1P39880 1505 aa20.01■□□□□ 0.79
TRAPPC4-204ENST00000524797 FGD5Q6ZNL6 1462 aa19.96■□□□□ 0.79
TRAPPC4-204ENST00000524797 RAD54L2Q9Y4B4 1467 aa19.95■□□□□ 0.78
TRAPPC4-204ENST00000524797 SOGA1O94964 1423 aa19.93■□□□□ 0.78
TRAPPC4-204ENST00000524797 AQRO60306 1485 aaKnown RBP eCLIP19.92■□□□□ 0.781e-6■■□□□ 13.1
TRAPPC4-204ENST00000524797 OSCARQ8IYS5 282 aa19.92■□□□□ 0.78
TRAPPC4-204ENST00000524797 WDR97A6NE52 1622 aa19.89■□□□□ 0.77
TRAPPC4-204ENST00000524797 CHD1O14646 1710 aa19.87■□□□□ 0.77
TRAPPC4-204ENST00000524797 TDRD9Q8NDG6 1382 aaKnown RBP19.84■□□□□ 0.77
TRAPPC4-204ENST00000524797 BIVM-ERCC5R4GMW8 1640 aa19.81■□□□□ 0.76
TRAPPC4-204ENST00000524797 TOP2BQ02880 1626 aa19.77■□□□□ 0.76
TRAPPC4-204ENST00000524797 PBRM1Q86U86 1689 aa19.77■□□□□ 0.76
TRAPPC4-204ENST00000524797 SYNJ1O43426 1573 aa19.76■□□□□ 0.75
TRAPPC4-204ENST00000524797 SNAPC4Q5SXM2 1469 aa19.76■□□□□ 0.75
TRAPPC4-204ENST00000524797 ABCA10Q8WWZ4 1543 aa19.75■□□□□ 0.75
TRAPPC4-204ENST00000524797 WRNQ14191 1432 aaPredicted RBP eCLIP19.75■□□□□ 0.75
TRAPPC4-204ENST00000524797 GRIN2BQ13224 1484 aa19.74■□□□□ 0.75
TRAPPC4-204ENST00000524797 ABCA5Q8WWZ7 1642 aa19.74■□□□□ 0.75
TRAPPC4-204ENST00000524797 RIMBP3CA6NJZ7 1639 aa19.72■□□□□ 0.75
TRAPPC4-204ENST00000524797 RIMBP3BA6NNM3 1639 aa19.72■□□□□ 0.75
TRAPPC4-204ENST00000524797 RIMBP3Q9UFD9 1639 aa19.72■□□□□ 0.75
TRAPPC4-204ENST00000524797 MAGI1Q96QZ7 1491 aaPredicted RBP19.71■□□□□ 0.75
TRAPPC4-204ENST00000524797 GAPVD1Q14C86 1478 aa19.71■□□□□ 0.75
TRAPPC4-204ENST00000524797 TRIM41Q8WV44 630 aa19.69■□□□□ 0.74
TRAPPC4-204ENST00000524797 FBLN2P98095 1184 aa19.68■□□□□ 0.74
TRAPPC4-204ENST00000524797 ARHGEF11O15085 1522 aa19.65■□□□□ 0.74
TRAPPC4-204ENST00000524797 SYNJ2O15056 1496 aa19.64■□□□□ 0.73
TRAPPC4-204ENST00000524797 CLASP1Q7Z460 1538 aa19.61■□□□□ 0.73
TRAPPC4-204ENST00000524797 CHMP7Q8WUX9 453 aaPredicted RBP19.6■□□□□ 0.73
TRAPPC4-204ENST00000524797 ADAMTS12P58397 1594 aa19.57■□□□□ 0.72
TRAPPC4-204ENST00000524797 ERICH3Q5RHP9 1530 aa19.51■□□□□ 0.71
TRAPPC4-204ENST00000524797 GRIN2AQ12879 1464 aa19.49■□□□□ 0.71
TRAPPC4-204ENST00000524797 ARAP1Q96P48 1450 aa19.49■□□□□ 0.71
TRAPPC4-204ENST00000524797 FHAD1B1AJZ9 1412 aa19.47■□□□□ 0.71
TRAPPC4-204ENST00000524797 CEP170Q5SW79 1584 aa19.44■□□□□ 0.7
TRAPPC4-204ENST00000524797 CYB5RLQ6IPT4 315 aa19.42■□□□□ 0.7
TRAPPC4-204ENST00000524797 NUP160Q12769 1436 aa19.41■□□□□ 0.7
TRAPPC4-204ENST00000524797 KIF27Q86VH2 1401 aa19.35■□□□□ 0.69
TRAPPC4-204ENST00000524797 SHROOM2Q13796 1616 aa19.34■□□□□ 0.69
TRAPPC4-204ENST00000524797 CUL7Q14999 1698 aa19.33■□□□□ 0.68
TRAPPC4-204ENST00000524797 ERCC6L2Q5T890 1561 aa19.31■□□□□ 0.68
TRAPPC4-204ENST00000524797 IGF1RP08069 1367 aa19.3■□□□□ 0.68
TRAPPC4-204ENST00000524797 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
TRAPPC4-204ENST00000524797 PRG4Q92954 1404 aaPredicted RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms