RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 NISCHQ9Y2I1 1504 aa40.82■■■■■ 4.12
HIF3A-208ENST00000524533 CCDC180Q9P1Z9 1646 aa36.7■■■■□ 3.47
HIF3A-208ENST00000524533 ABCC9O60706 1549 aa36.56■■■■□ 3.44
HIF3A-208ENST00000524533 RB1CC1Q8TDY2 1594 aa34.87■■■■□ 3.17
HIF3A-208ENST00000524533 NACADO15069 1562 aa34.62■■■■□ 3.13
HIF3A-208ENST00000524533 DCAF8L2P0C7V8 631 aa34.34■■■■□ 3.09
HIF3A-208ENST00000524533 MYO15BQ96JP2 1530 aa34.15■■■■□ 3.06
HIF3A-208ENST00000524533 DNAJC5BQ9UF47 199 aa34.14■■■■□ 3.06
HIF3A-208ENST00000524533 UNC13AQ9UPW8 1703 aa34.12■■■■□ 3.05
HIF3A-208ENST00000524533 PABPN1Q86U42 306 aaKnown RBP eCLIP33.97■■■■□ 3.03
HIF3A-208ENST00000524533 ZCCHC6Q5VYS8 1495 aaKnown RBP33.87■■■■□ 3.01
HIF3A-208ENST00000524533 BICRAQ9NZM4 1560 aa33.82■■■■□ 3
HIF3A-208ENST00000524533 DCAF1Q9Y4B6 1507 aa33.74■■■□□ 2.99
HIF3A-208ENST00000524533 SHROOM4Q9ULL8 1493 aa33.42■■■□□ 2.94
HIF3A-208ENST00000524533 SCRIBQ14160 1630 aa33.41■■■□□ 2.94
HIF3A-208ENST00000524533 CC2D2AQ9P2K1 1620 aa33.06■■■□□ 2.88
HIF3A-208ENST00000524533 EIF4G1Q04637 1599 aaKnown RBP33■■■□□ 2.87
HIF3A-208ENST00000524533 CECR2Q9BXF3 1484 aa32.93■■■□□ 2.86
HIF3A-208ENST00000524533 NCAPD3P42695 1498 aa31.91■■■□□ 2.7
HIF3A-208ENST00000524533 SMARCA4P51532 1647 aa31.88■■■□□ 2.69
HIF3A-208ENST00000524533 ATAD2BQ9ULI0 1458 aa31.84■■■□□ 2.69
HIF3A-208ENST00000524533 SMARCA2P51531 1590 aa31.8■■■□□ 2.68
HIF3A-208ENST00000524533 HMGXB3Q12766 1538 aa31.75■■■□□ 2.67
HIF3A-208ENST00000524533 BAZ1AQ9NRL2 1556 aaPredicted RBP31.72■■■□□ 2.67
HIF3A-208ENST00000524533 ERCC6Q03468 1493 aa31.59■■■□□ 2.65
HIF3A-208ENST00000524533 BAZ1BQ9UIG0 1483 aaKnown RBP31.56■■■□□ 2.64
HIF3A-208ENST00000524533 PEG3Q9GZU2 1588 aa31.56■■■□□ 2.64
HIF3A-208ENST00000524533 CUX2O14529 1486 aa31.51■■■□□ 2.63
HIF3A-208ENST00000524533 MROH2BQ7Z745 1585 aa31.45■■■□□ 2.63
HIF3A-208ENST00000524533 NESP48681 1621 aa31.42■■■□□ 2.62
HIF3A-208ENST00000524533 DNAJC5Q9H3Z4 198 aa31.33■■■□□ 2.61
HIF3A-208ENST00000524533 LAMC3Q9Y6N6 1575 aa31.26■■■□□ 2.59
HIF3A-208ENST00000524533 THOC2Q8NI27 1593 aaKnown RBP31.16■■■□□ 2.58
HIF3A-208ENST00000524533 WIZO95785 1651 aa31.11■■■□□ 2.57
HIF3A-208ENST00000524533 KIF21AQ7Z4S6 1674 aa31.09■■■□□ 2.57
HIF3A-208ENST00000524533 PDS5BQ9NTI5 1447 aa31.02■■■□□ 2.56
HIF3A-208ENST00000524533 CADPSQ9ULU8 1353 aa30.93■■■□□ 2.54
HIF3A-208ENST00000524533 MRC2Q9UBG0 1479 aa30.78■■■□□ 2.52
HIF3A-208ENST00000524533 RSF1Q96T23 1441 aaPredicted RBP30.78■■■□□ 2.52
HIF3A-208ENST00000524533 TOP2AP11388 1531 aaKnown RBP30.73■■■□□ 2.51
HIF3A-208ENST00000524533 WDR62O43379 1518 aa30.72■■■□□ 2.51
HIF3A-208ENST00000524533 CEP164Q9UPV0 1460 aa30.68■■■□□ 2.5
HIF3A-208ENST00000524533 FANCD2Q9BXW9 1451 aa30.63■■■□□ 2.49
HIF3A-208ENST00000524533 CFTRP13569 1480 aa30.62■■■□□ 2.49
HIF3A-208ENST00000524533 PRDM2Q13029 1718 aa30.44■■■□□ 2.46
HIF3A-208ENST00000524533 URB2Q14146 1524 aaKnown RBP30.37■■■□□ 2.45
HIF3A-208ENST00000524533 CCDC88BA6NC98 1476 aa30.31■■■□□ 2.44
HIF3A-208ENST00000524533 TOPBP1Q92547 1522 aa30.06■■■□□ 2.4
HIF3A-208ENST00000524533 IFT140Q96RY7 1462 aa30.04■■■□□ 2.4
HIF3A-208ENST00000524533 TRIM41Q8WV44 630 aa30.01■■■□□ 2.39
HIF3A-208ENST00000524533 OSCARQ8IYS5 282 aa29.99■■■□□ 2.39
HIF3A-208ENST00000524533 ABCC8Q09428 1581 aa29.98■■■□□ 2.39
HIF3A-208ENST00000524533 DNMBPQ6XZF7 1577 aa29.98■■■□□ 2.39
HIF3A-208ENST00000524533 ZNF608Q9ULD9 1512 aaPredicted RBP29.97■■■□□ 2.39
HIF3A-208ENST00000524533 EIF4G3O43432 1585 aaKnown RBP29.89■■■□□ 2.38
HIF3A-208ENST00000524533 TARBP1Q13395 1621 aaKnown RBP29.81■■■□□ 2.36
HIF3A-208ENST00000524533 POLA1P09884 1462 aaPredicted RBP29.75■■■□□ 2.35
HIF3A-208ENST00000524533 RIMBP3CA6NJZ7 1639 aa29.71■■■□□ 2.35
HIF3A-208ENST00000524533 RIMBP3BA6NNM3 1639 aa29.71■■■□□ 2.35
HIF3A-208ENST00000524533 RIMBP3Q9UFD9 1639 aa29.71■■■□□ 2.35
HIF3A-208ENST00000524533 AQRO60306 1485 aaKnown RBP eCLIP29.68■■■□□ 2.34
HIF3A-208ENST00000524533 CHD1O14646 1710 aa29.67■■■□□ 2.34
HIF3A-208ENST00000524533 RAD54L2Q9Y4B4 1467 aa29.61■■■□□ 2.33
HIF3A-208ENST00000524533 ARHGEF11O15085 1522 aa29.61■■■□□ 2.33
HIF3A-208ENST00000524533 FGD5Q6ZNL6 1462 aa29.58■■■□□ 2.33
HIF3A-208ENST00000524533 SOGA1O94964 1423 aa29.57■■■□□ 2.32
HIF3A-208ENST00000524533 CUX1P39880 1505 aa29.55■■■□□ 2.32
HIF3A-208ENST00000524533 WDR97A6NE52 1622 aa29.55■■■□□ 2.32
HIF3A-208ENST00000524533 TDRD9Q8NDG6 1382 aaKnown RBP29.51■■■□□ 2.31
HIF3A-208ENST00000524533 FBLN2P98095 1184 aa29.46■■■□□ 2.31
HIF3A-208ENST00000524533 SNAPC4Q5SXM2 1469 aa29.43■■■□□ 2.3
HIF3A-208ENST00000524533 SUPT5HO00267 1087 aaKnown RBP29.42■■■□□ 2.3
HIF3A-208ENST00000524533 MAGI1Q96QZ7 1491 aaPredicted RBP29.36■■■□□ 2.29
HIF3A-208ENST00000524533 GRIN2BQ13224 1484 aa29.36■■■□□ 2.29
HIF3A-208ENST00000524533 PBRM1Q86U86 1689 aa29.33■■■□□ 2.29
HIF3A-208ENST00000524533 ARAP1Q96P48 1450 aa29.3■■■□□ 2.28
HIF3A-208ENST00000524533 SYNJ1O43426 1573 aa29.29■■■□□ 2.28
HIF3A-208ENST00000524533 CLASP1Q7Z460 1538 aa29.29■■■□□ 2.28
HIF3A-208ENST00000524533 CYB5RLQ6IPT4 315 aa29.28■■■□□ 2.28
HIF3A-208ENST00000524533 SYNJ2O15056 1496 aa29.26■■■□□ 2.27
HIF3A-208ENST00000524533 GAPVD1Q14C86 1478 aa29.25■■■□□ 2.27
HIF3A-208ENST00000524533 CHMP7Q8WUX9 453 aaPredicted RBP29.25■■■□□ 2.27
HIF3A-208ENST00000524533 ABCA5Q8WWZ7 1642 aa29.24■■■□□ 2.27
HIF3A-208ENST00000524533 ABCA10Q8WWZ4 1543 aa29.24■■■□□ 2.27
HIF3A-208ENST00000524533 BIVM-ERCC5R4GMW8 1640 aa29.15■■■□□ 2.26
HIF3A-208ENST00000524533 TOP2BQ02880 1626 aa29.12■■■□□ 2.25
HIF3A-208ENST00000524533 WRNQ14191 1432 aaPredicted RBP eCLIP29.11■■■□□ 2.25
HIF3A-208ENST00000524533 ADAMTS12P58397 1594 aa29.02■■■□□ 2.24
HIF3A-208ENST00000524533 GRIN2AQ12879 1464 aa28.98■■■□□ 2.23
HIF3A-208ENST00000524533 TRHP20396 242 aaPredicted RBP28.97■■■□□ 2.23
HIF3A-208ENST00000524533 ERICH3Q5RHP9 1530 aa28.89■■■□□ 2.22
HIF3A-208ENST00000524533 CEP170Q5SW79 1584 aa28.89■■■□□ 2.22
HIF3A-208ENST00000524533 FHAD1B1AJZ9 1412 aa28.87■■■□□ 2.21
HIF3A-208ENST00000524533 NUP160Q12769 1436 aa28.86■■■□□ 2.21
HIF3A-208ENST00000524533 ERCC6L2Q5T890 1561 aa28.81■■■□□ 2.2
HIF3A-208ENST00000524533 SHROOM2Q13796 1616 aa28.79■■■□□ 2.2
HIF3A-208ENST00000524533 RUSC2Q8N2Y8 1516 aa28.62■■■□□ 2.17
HIF3A-208ENST00000524533 PRG4Q92954 1404 aaPredicted RBP28.57■■■□□ 2.16
HIF3A-208ENST00000524533 CUL7Q14999 1698 aa28.53■■■□□ 2.16
HIF3A-208ENST00000524533 KIF27Q86VH2 1401 aa28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms