RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 NISCHQ9Y2I1 1504 aa51.13■■■■■ 5.77
VPS28-203ENST00000524521 CCDC180Q9P1Z9 1646 aa45.52■■■■■ 4.88
VPS28-203ENST00000524521 ABCC9O60706 1549 aa44.97■■■■■ 4.79
VPS28-203ENST00000524521 DCAF8L2P0C7V8 631 aa43.06■■■■■ 4.48
VPS28-203ENST00000524521 RB1CC1Q8TDY2 1594 aa43.05■■■■■ 4.48
VPS28-203ENST00000524521 NACADO15069 1562 aa42.91■■■■■ 4.46
VPS28-203ENST00000524521 MYO15BQ96JP2 1530 aa42.51■■■■■ 4.39
VPS28-203ENST00000524521 ZCCHC6Q5VYS8 1495 aaKnown RBP42.48■■■■■ 4.39
VPS28-203ENST00000524521 DCAF1Q9Y4B6 1507 aa42.22■■■■■ 4.35
VPS28-203ENST00000524521 PABPN1Q86U42 306 aaKnown RBP eCLIP42.05■■■■■ 4.32
VPS28-203ENST00000524521 UNC13AQ9UPW8 1703 aa42.04■■■■■ 4.32
VPS28-203ENST00000524521 BICRAQ9NZM4 1560 aa41.75■■■■■ 4.27
VPS28-203ENST00000524521 DNAJC5BQ9UF47 199 aa41.62■■■■■ 4.25
VPS28-203ENST00000524521 SCRIBQ14160 1630 aa41.59■■■■■ 4.25
VPS28-203ENST00000524521 SHROOM4Q9ULL8 1493 aa41.21■■■■■ 4.19
VPS28-203ENST00000524521 EIF4G1Q04637 1599 aaKnown RBP40.68■■■■■ 4.1
VPS28-203ENST00000524521 CC2D2AQ9P2K1 1620 aa40.61■■■■■ 4.09
VPS28-203ENST00000524521 CECR2Q9BXF3 1484 aa40.42■■■■■ 4.06
VPS28-203ENST00000524521 SMARCA4P51532 1647 aa39.72■■■■□ 3.95
VPS28-203ENST00000524521 BAZ1AQ9NRL2 1556 aaPredicted RBP39.63■■■■□ 3.93
VPS28-203ENST00000524521 NCAPD3P42695 1498 aa39.62■■■■□ 3.93
VPS28-203ENST00000524521 ATAD2BQ9ULI0 1458 aa39.61■■■■□ 3.93
VPS28-203ENST00000524521 SMARCA2P51531 1590 aa39.52■■■■□ 3.92
VPS28-203ENST00000524521 MROH2BQ7Z745 1585 aa39.42■■■■□ 3.9
VPS28-203ENST00000524521 HMGXB3Q12766 1538 aa39.35■■■■□ 3.89
VPS28-203ENST00000524521 PEG3Q9GZU2 1588 aa39.29■■■■□ 3.88
VPS28-203ENST00000524521 BAZ1BQ9UIG0 1483 aaKnown RBP39.28■■■■□ 3.88
VPS28-203ENST00000524521 WIZO95785 1651 aa38.97■■■■□ 3.83
VPS28-203ENST00000524521 RSF1Q96T23 1441 aaPredicted RBP38.86■■■■□ 3.81
VPS28-203ENST00000524521 NESP48681 1621 aa38.81■■■■□ 3.8
VPS28-203ENST00000524521 ERCC6Q03468 1493 aa38.79■■■■□ 3.8
VPS28-203ENST00000524521 LAMC3Q9Y6N6 1575 aa38.61■■■■□ 3.77
VPS28-203ENST00000524521 TOP2AP11388 1531 aaKnown RBP38.5■■■■□ 3.75
VPS28-203ENST00000524521 CADPSQ9ULU8 1353 aa38.49■■■■□ 3.75
VPS28-203ENST00000524521 CUX2O14529 1486 aa38.42■■■■□ 3.74
VPS28-203ENST00000524521 PDS5BQ9NTI5 1447 aa38.41■■■■□ 3.74
VPS28-203ENST00000524521 KIF21AQ7Z4S6 1674 aa38.3■■■■□ 3.72
VPS28-203ENST00000524521 THOC2Q8NI27 1593 aaKnown RBP38.2■■■■□ 3.71
VPS28-203ENST00000524521 CFTRP13569 1480 aa38.15■■■■□ 3.7
VPS28-203ENST00000524521 CCDC88BA6NC98 1476 aa38.11■■■■□ 3.69
VPS28-203ENST00000524521 FANCD2Q9BXW9 1451 aa38.03■■■■□ 3.68
VPS28-203ENST00000524521 MRC2Q9UBG0 1479 aa38.01■■■■□ 3.67
VPS28-203ENST00000524521 CEP164Q9UPV0 1460 aa38.01■■■■□ 3.67
VPS28-203ENST00000524521 WDR62O43379 1518 aa37.86■■■■□ 3.65
VPS28-203ENST00000524521 SUPT5HO00267 1087 aaKnown RBP37.79■■■■□ 3.64
VPS28-203ENST00000524521 PRDM2Q13029 1718 aa37.77■■■■□ 3.64
VPS28-203ENST00000524521 DNAJC5Q9H3Z4 198 aa37.72■■■■□ 3.63
VPS28-203ENST00000524521 URB2Q14146 1524 aaKnown RBP37.66■■■■□ 3.62
VPS28-203ENST00000524521 TOPBP1Q92547 1522 aa37.38■■■■□ 3.57
VPS28-203ENST00000524521 ABCC8Q09428 1581 aa37.35■■■■□ 3.57
VPS28-203ENST00000524521 DNMBPQ6XZF7 1577 aa37.29■■■■□ 3.56
VPS28-203ENST00000524521 IFT140Q96RY7 1462 aa37.22■■■■□ 3.55
VPS28-203ENST00000524521 ZNF608Q9ULD9 1512 aaPredicted RBP37.1■■■■□ 3.53
VPS28-203ENST00000524521 POLA1P09884 1462 aaPredicted RBP37.04■■■■□ 3.52
VPS28-203ENST00000524521 CUX1P39880 1505 aa36.98■■■■□ 3.51
VPS28-203ENST00000524521 TARBP1Q13395 1621 aaKnown RBP36.97■■■■□ 3.51
VPS28-203ENST00000524521 SOGA1O94964 1423 aa36.94■■■■□ 3.5
VPS28-203ENST00000524521 RAD54L2Q9Y4B4 1467 aa36.94■■■■□ 3.5
VPS28-203ENST00000524521 FGD5Q6ZNL6 1462 aa36.92■■■■□ 3.5
VPS28-203ENST00000524521 OSCARQ8IYS5 282 aa36.9■■■■□ 3.5
VPS28-203ENST00000524521 AQRO60306 1485 aaKnown RBP eCLIP36.89■■■■□ 3.53e-24■■■■■ 33.2
VPS28-203ENST00000524521 EIF4G3O43432 1585 aaKnown RBP36.89■■■■□ 3.5
VPS28-203ENST00000524521 TDRD9Q8NDG6 1382 aaKnown RBP36.8■■■■□ 3.48
VPS28-203ENST00000524521 WRNQ14191 1432 aaPredicted RBP eCLIP36.66■■■■□ 3.46
VPS28-203ENST00000524521 FBLN2P98095 1184 aa36.61■■■■□ 3.45
VPS28-203ENST00000524521 WDR97A6NE52 1622 aa36.6■■■■□ 3.45
VPS28-203ENST00000524521 TOP2BQ02880 1626 aa36.56■■■■□ 3.44
VPS28-203ENST00000524521 SYNJ1O43426 1573 aa36.55■■■■□ 3.44
VPS28-203ENST00000524521 BIVM-ERCC5R4GMW8 1640 aa36.54■■■■□ 3.44
VPS28-203ENST00000524521 ABCA10Q8WWZ4 1543 aa36.52■■■■□ 3.44
VPS28-203ENST00000524521 GRIN2BQ13224 1484 aa36.5■■■■□ 3.43
VPS28-203ENST00000524521 CHD1O14646 1710 aa36.5■■■■□ 3.43
VPS28-203ENST00000524521 SNAPC4Q5SXM2 1469 aa36.5■■■■□ 3.43
VPS28-203ENST00000524521 GAPVD1Q14C86 1478 aa36.48■■■■□ 3.43
VPS28-203ENST00000524521 CHMP7Q8WUX9 453 aaPredicted RBP36.42■■■■□ 3.42
VPS28-203ENST00000524521 TRIM41Q8WV44 630 aa36.41■■■■□ 3.42
VPS28-203ENST00000524521 MAGI1Q96QZ7 1491 aaPredicted RBP36.41■■■■□ 3.42
VPS28-203ENST00000524521 ABCA5Q8WWZ7 1642 aa36.37■■■■□ 3.41
VPS28-203ENST00000524521 PBRM1Q86U86 1689 aa36.36■■■■□ 3.41
VPS28-203ENST00000524521 SYNJ2O15056 1496 aa36.3■■■■□ 3.4
VPS28-203ENST00000524521 RIMBP3CA6NJZ7 1639 aa36.24■■■■□ 3.39
VPS28-203ENST00000524521 RIMBP3BA6NNM3 1639 aa36.24■■■■□ 3.39
VPS28-203ENST00000524521 RIMBP3Q9UFD9 1639 aa36.24■■■■□ 3.39
VPS28-203ENST00000524521 ARHGEF11O15085 1522 aa36.2■■■■□ 3.39
VPS28-203ENST00000524521 CLASP1Q7Z460 1538 aa36.08■■■■□ 3.37
VPS28-203ENST00000524521 ERICH3Q5RHP9 1530 aa36.07■■■■□ 3.36
VPS28-203ENST00000524521 ADAMTS12P58397 1594 aa36.05■■■■□ 3.36
VPS28-203ENST00000524521 FHAD1B1AJZ9 1412 aa36.04■■■■□ 3.36
VPS28-203ENST00000524521 CYB5RLQ6IPT4 315 aa36.02■■■■□ 3.36
VPS28-203ENST00000524521 GRIN2AQ12879 1464 aa36.02■■■■□ 3.36
VPS28-203ENST00000524521 KIF27Q86VH2 1401 aa35.91■■■■□ 3.34
VPS28-203ENST00000524521 ARAP1Q96P48 1450 aa35.89■■■■□ 3.34
VPS28-203ENST00000524521 NUP160Q12769 1436 aa35.86■■■■□ 3.33
VPS28-203ENST00000524521 CEP170Q5SW79 1584 aa35.85■■■■□ 3.33
VPS28-203ENST00000524521 IGF1RP08069 1367 aa35.84■■■■□ 3.33
VPS28-203ENST00000524521 CUL7Q14999 1698 aa35.66■■■■□ 3.3
VPS28-203ENST00000524521 CARMIL1Q5VZK9 1371 aa35.63■■■■□ 3.29
VPS28-203ENST00000524521 ERCC6L2Q5T890 1561 aa35.61■■■■□ 3.29
VPS28-203ENST00000524521 JPH4Q96JJ6 628 aa35.6■■■■□ 3.29
VPS28-203ENST00000524521 SHROOM2Q13796 1616 aa35.59■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms