RNA–Protein interactions for RNA: ENST00000524475.1

SF3B2-202, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 3

Gene SF3B2, Length 432 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-202ENST00000524475 NISCHQ9Y2I1 1504 aa36.69■■■■□ 3.46
SF3B2-202ENST00000524475 CCDC180Q9P1Z9 1646 aa32.66■■■□□ 2.82
SF3B2-202ENST00000524475 ABCC9O60706 1549 aa31.66■■■□□ 2.66
SF3B2-202ENST00000524475 NACADO15069 1562 aa30.65■■■□□ 2.5
SF3B2-202ENST00000524475 RB1CC1Q8TDY2 1594 aa30.62■■■□□ 2.49
SF3B2-202ENST00000524475 ZCCHC6Q5VYS8 1495 aaKnown RBP30.62■■■□□ 2.49
SF3B2-202ENST00000524475 MYO15BQ96JP2 1530 aa30.59■■■□□ 2.49
SF3B2-202ENST00000524475 DCAF1Q9Y4B6 1507 aa30.47■■■□□ 2.47
SF3B2-202ENST00000524475 DCAF8L2P0C7V8 631 aa30.37■■■□□ 2.45
SF3B2-202ENST00000524475 UNC13AQ9UPW8 1703 aa29.91■■■□□ 2.38
SF3B2-202ENST00000524475 BICRAQ9NZM4 1560 aa29.69■■■□□ 2.34
SF3B2-202ENST00000524475 SCRIBQ14160 1630 aa29.65■■■□□ 2.34
SF3B2-202ENST00000524475 PABPN1Q86U42 306 aaKnown RBP eCLIP29.53■■■□□ 2.32
SF3B2-202ENST00000524475 SHROOM4Q9ULL8 1493 aa29.52■■■□□ 2.32
SF3B2-202ENST00000524475 DNAJC5BQ9UF47 199 aa28.92■■■□□ 2.22
SF3B2-202ENST00000524475 EIF4G1Q04637 1599 aaKnown RBP28.88■■■□□ 2.21
SF3B2-202ENST00000524475 CC2D2AQ9P2K1 1620 aa28.71■■■□□ 2.19
SF3B2-202ENST00000524475 CECR2Q9BXF3 1484 aa28.5■■■□□ 2.15
SF3B2-202ENST00000524475 BAZ1AQ9NRL2 1556 aaPredicted RBP28.45■■■□□ 2.15
SF3B2-202ENST00000524475 SMARCA4P51532 1647 aa28.45■■■□□ 2.14
SF3B2-202ENST00000524475 SMARCA2P51531 1590 aa28.27■■■□□ 2.12
SF3B2-202ENST00000524475 NCAPD3P42695 1498 aa28.27■■■□□ 2.12
SF3B2-202ENST00000524475 ATAD2BQ9ULI0 1458 aa28.26■■■□□ 2.11
SF3B2-202ENST00000524475 PEG3Q9GZU2 1588 aa28.25■■■□□ 2.11
SF3B2-202ENST00000524475 MROH2BQ7Z745 1585 aa28.24■■■□□ 2.11
SF3B2-202ENST00000524475 HMGXB3Q12766 1538 aa28.17■■■□□ 2.1
SF3B2-202ENST00000524475 BAZ1BQ9UIG0 1483 aaKnown RBP28.02■■■□□ 2.08
SF3B2-202ENST00000524475 RSF1Q96T23 1441 aaPredicted RBP27.96■■■□□ 2.07
SF3B2-202ENST00000524475 WIZO95785 1651 aa27.92■■■□□ 2.06
SF3B2-202ENST00000524475 TOP2AP11388 1531 aaKnown RBP27.7■■■□□ 2.02
SF3B2-202ENST00000524475 LAMC3Q9Y6N6 1575 aa27.51■■□□□ 1.99
SF3B2-202ENST00000524475 NESP48681 1621 aa27.43■■□□□ 1.98
SF3B2-202ENST00000524475 CADPSQ9ULU8 1353 aa27.41■■□□□ 1.98
SF3B2-202ENST00000524475 CCDC88BA6NC98 1476 aa27.32■■□□□ 1.96
SF3B2-202ENST00000524475 ERCC6Q03468 1493 aa27.31■■□□□ 1.96
SF3B2-202ENST00000524475 CFTRP13569 1480 aa27.3■■□□□ 1.96
SF3B2-202ENST00000524475 PDS5BQ9NTI5 1447 aa27.28■■□□□ 1.96
SF3B2-202ENST00000524475 KIF21AQ7Z4S6 1674 aa27.17■■□□□ 1.94
SF3B2-202ENST00000524475 SUPT5HO00267 1087 aaKnown RBP27.16■■□□□ 1.94
SF3B2-202ENST00000524475 PRDM2Q13029 1718 aa27.14■■□□□ 1.94
SF3B2-202ENST00000524475 THOC2Q8NI27 1593 aaKnown RBP27.1■■□□□ 1.93
SF3B2-202ENST00000524475 CUX2O14529 1486 aa27.08■■□□□ 1.93
SF3B2-202ENST00000524475 FANCD2Q9BXW9 1451 aa27.07■■□□□ 1.92
SF3B2-202ENST00000524475 CEP164Q9UPV0 1460 aa27.04■■□□□ 1.92
SF3B2-202ENST00000524475 MRC2Q9UBG0 1479 aa26.99■■□□□ 1.91
SF3B2-202ENST00000524475 WDR62O43379 1518 aa26.93■■□□□ 1.9
SF3B2-202ENST00000524475 URB2Q14146 1524 aaKnown RBP26.8■■□□□ 1.88
SF3B2-202ENST00000524475 ABCC8Q09428 1581 aa26.73■■□□□ 1.87
SF3B2-202ENST00000524475 DNMBPQ6XZF7 1577 aa26.67■■□□□ 1.86
SF3B2-202ENST00000524475 TOPBP1Q92547 1522 aa26.66■■□□□ 1.86
SF3B2-202ENST00000524475 CUX1P39880 1505 aa26.49■■□□□ 1.83
SF3B2-202ENST00000524475 IFT140Q96RY7 1462 aa26.49■■□□□ 1.83
SF3B2-202ENST00000524475 POLA1P09884 1462 aaPredicted RBP26.45■■□□□ 1.82
SF3B2-202ENST00000524475 TARBP1Q13395 1621 aaKnown RBP26.39■■□□□ 1.82
SF3B2-202ENST00000524475 FGD5Q6ZNL6 1462 aa26.37■■□□□ 1.81
SF3B2-202ENST00000524475 WRNQ14191 1432 aaPredicted RBP eCLIP26.36■■□□□ 1.81
SF3B2-202ENST00000524475 BIVM-ERCC5R4GMW8 1640 aa26.35■■□□□ 1.81
SF3B2-202ENST00000524475 TOP2BQ02880 1626 aa26.34■■□□□ 1.81
SF3B2-202ENST00000524475 SOGA1O94964 1423 aa26.31■■□□□ 1.8
SF3B2-202ENST00000524475 ZNF608Q9ULD9 1512 aaPredicted RBP26.29■■□□□ 1.8
SF3B2-202ENST00000524475 WDR97A6NE52 1622 aa26.29■■□□□ 1.8
SF3B2-202ENST00000524475 SYNJ1O43426 1573 aa26.28■■□□□ 1.8
SF3B2-202ENST00000524475 RAD54L2Q9Y4B4 1467 aa26.26■■□□□ 1.79
SF3B2-202ENST00000524475 EIF4G3O43432 1585 aaKnown RBP26.25■■□□□ 1.79
SF3B2-202ENST00000524475 ABCA10Q8WWZ4 1543 aa26.19■■□□□ 1.78
SF3B2-202ENST00000524475 AQRO60306 1485 aaKnown RBP eCLIP26.14■■□□□ 1.783e-6■■■□□ 15.2
SF3B2-202ENST00000524475 TDRD9Q8NDG6 1382 aaKnown RBP26.09■■□□□ 1.77
SF3B2-202ENST00000524475 ABCA5Q8WWZ7 1642 aa26.07■■□□□ 1.76
SF3B2-202ENST00000524475 DNAJC5Q9H3Z4 198 aa26.03■■□□□ 1.76
SF3B2-202ENST00000524475 GRIN2BQ13224 1484 aa26.03■■□□□ 1.76
SF3B2-202ENST00000524475 GAPVD1Q14C86 1478 aa26.03■■□□□ 1.76
SF3B2-202ENST00000524475 PBRM1Q86U86 1689 aa25.99■■□□□ 1.75
SF3B2-202ENST00000524475 MAGI1Q96QZ7 1491 aaPredicted RBP25.98■■□□□ 1.75
SF3B2-202ENST00000524475 SNAPC4Q5SXM2 1469 aa25.94■■□□□ 1.74
SF3B2-202ENST00000524475 ERICH3Q5RHP9 1530 aa25.88■■□□□ 1.73
SF3B2-202ENST00000524475 OSCARQ8IYS5 282 aa25.88■■□□□ 1.73
SF3B2-202ENST00000524475 CHD1O14646 1710 aa25.88■■□□□ 1.73
SF3B2-202ENST00000524475 SYNJ2O15056 1496 aa25.85■■□□□ 1.73
SF3B2-202ENST00000524475 KIF27Q86VH2 1401 aa25.81■■□□□ 1.72
SF3B2-202ENST00000524475 ADAMTS12P58397 1594 aa25.8■■□□□ 1.72
SF3B2-202ENST00000524475 FHAD1B1AJZ9 1412 aa25.75■■□□□ 1.71
SF3B2-202ENST00000524475 CHMP7Q8WUX9 453 aaPredicted RBP25.74■■□□□ 1.71
SF3B2-202ENST00000524475 FBLN2P98095 1184 aa25.72■■□□□ 1.71
SF3B2-202ENST00000524475 TRIM41Q8WV44 630 aa25.72■■□□□ 1.71
SF3B2-202ENST00000524475 GRIN2AQ12879 1464 aa25.69■■□□□ 1.7
SF3B2-202ENST00000524475 IGF1RP08069 1367 aa25.68■■□□□ 1.7
SF3B2-202ENST00000524475 CUL7Q14999 1698 aa25.67■■□□□ 1.7
SF3B2-202ENST00000524475 CLASP1Q7Z460 1538 aa25.65■■□□□ 1.7
SF3B2-202ENST00000524475 NUP160Q12769 1436 aa25.61■■□□□ 1.69
SF3B2-202ENST00000524475 CEP170Q5SW79 1584 aa25.54■■□□□ 1.68
SF3B2-202ENST00000524475 RUSC2Q8N2Y8 1516 aa25.53■■□□□ 1.68
SF3B2-202ENST00000524475 CARMIL1Q5VZK9 1371 aa25.52■■□□□ 1.68
SF3B2-202ENST00000524475 ARHGEF11O15085 1522 aa25.5■■□□□ 1.67
SF3B2-202ENST00000524475 CHIC1Q5VXU3 224 aa25.49■■□□□ 1.67
SF3B2-202ENST00000524475 RIMBP3CA6NJZ7 1639 aa25.48■■□□□ 1.67
SF3B2-202ENST00000524475 RIMBP3BA6NNM3 1639 aa25.48■■□□□ 1.67
SF3B2-202ENST00000524475 RIMBP3Q9UFD9 1639 aa25.48■■□□□ 1.67
SF3B2-202ENST00000524475 EEA1Q15075 1411 aa25.45■■□□□ 1.66
SF3B2-202ENST00000524475 SHROOM2Q13796 1616 aa25.41■■□□□ 1.66
SF3B2-202ENST00000524475 RAPGEF2Q9Y4G8 1499 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms