RNA–Protein interactions for RNA: ENST00000524330.1

VPS13B-212, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 218 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-212ENST00000524330 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
VPS13B-212ENST00000524330 CCDC180Q9P1Z9 1646 aa19.42■□□□□ 0.7
VPS13B-212ENST00000524330 ZCCHC6Q5VYS8 1495 aaKnown RBP18.65■□□□□ 0.58
VPS13B-212ENST00000524330 DCAF1Q9Y4B6 1507 aa18.44■□□□□ 0.54
VPS13B-212ENST00000524330 DCAF8L2P0C7V8 631 aa18.36■□□□□ 0.53
VPS13B-212ENST00000524330 MYO15BQ96JP2 1530 aa18.23■□□□□ 0.51
VPS13B-212ENST00000524330 ABCC9O60706 1549 aa18.19■□□□□ 0.5
VPS13B-212ENST00000524330 NACADO15069 1562 aa18.09■□□□□ 0.49
VPS13B-212ENST00000524330 SHROOM4Q9ULL8 1493 aa18.07■□□□□ 0.48
VPS13B-212ENST00000524330 RB1CC1Q8TDY2 1594 aa17.92■□□□□ 0.46
VPS13B-212ENST00000524330 SCRIBQ14160 1630 aa17.76■□□□□ 0.43
VPS13B-212ENST00000524330 SUPT5HO00267 1087 aaKnown RBP17.5■□□□□ 0.39
VPS13B-212ENST00000524330 UNC13AQ9UPW8 1703 aa17.38■□□□□ 0.37
VPS13B-212ENST00000524330 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
VPS13B-212ENST00000524330 BAZ1AQ9NRL2 1556 aaPredicted RBP17.21■□□□□ 0.35
VPS13B-212ENST00000524330 BICRAQ9NZM4 1560 aa17.19■□□□□ 0.34
VPS13B-212ENST00000524330 CECR2Q9BXF3 1484 aa17.15■□□□□ 0.34
VPS13B-212ENST00000524330 PABPN1Q86U42 306 aaKnown RBP eCLIP17.14■□□□□ 0.33
VPS13B-212ENST00000524330 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
VPS13B-212ENST00000524330 SMARCA4P51532 1647 aa17.06■□□□□ 0.32
VPS13B-212ENST00000524330 WIZO95785 1651 aa16.95■□□□□ 0.3
VPS13B-212ENST00000524330 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
VPS13B-212ENST00000524330 PEG3Q9GZU2 1588 aa16.86■□□□□ 0.29
VPS13B-212ENST00000524330 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
VPS13B-212ENST00000524330 CHIC1Q5VXU3 224 aa16.77■□□□□ 0.28
VPS13B-212ENST00000524330 ATAD2BQ9ULI0 1458 aa16.76■□□□□ 0.27
VPS13B-212ENST00000524330 EIF4G1Q04637 1599 aaKnown RBP16.76■□□□□ 0.27
VPS13B-212ENST00000524330 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
VPS13B-212ENST00000524330 CCDC88BA6NC98 1476 aa16.65■□□□□ 0.26
VPS13B-212ENST00000524330 NCAPD3P42695 1498 aa16.65■□□□□ 0.26
VPS13B-212ENST00000524330 HMGXB3Q12766 1538 aa16.65■□□□□ 0.26
VPS13B-212ENST00000524330 TRIM41Q8WV44 630 aa16.54■□□□□ 0.24
VPS13B-212ENST00000524330 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
VPS13B-212ENST00000524330 WRNQ14191 1432 aaPredicted RBP eCLIP16.28■□□□□ 0.2
VPS13B-212ENST00000524330 CFTRP13569 1480 aa16.27■□□□□ 0.19
VPS13B-212ENST00000524330 ABCC8Q09428 1581 aa16.26■□□□□ 0.19
VPS13B-212ENST00000524330 PRDM2Q13029 1718 aa16.24■□□□□ 0.19
VPS13B-212ENST00000524330 CADPSQ9ULU8 1353 aa16.24■□□□□ 0.19
VPS13B-212ENST00000524330 EEA1Q15075 1411 aa16.2■□□□□ 0.18
VPS13B-212ENST00000524330 FAM9AQ8IZU1 332 aaPredicted RBP16.12■□□□□ 0.17
VPS13B-212ENST00000524330 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
VPS13B-212ENST00000524330 LAMC3Q9Y6N6 1575 aa16.11■□□□□ 0.17
VPS13B-212ENST00000524330 SYNJ1O43426 1573 aa16.1■□□□□ 0.17
VPS13B-212ENST00000524330 BIVM-ERCC5R4GMW8 1640 aa16.1■□□□□ 0.17
VPS13B-212ENST00000524330 LOC105371045A0A1W2PR82 267 aa16.05■□□□□ 0.16
VPS13B-212ENST00000524330 FANCD2Q9BXW9 1451 aa16.03■□□□□ 0.16
VPS13B-212ENST00000524330 PDS5BQ9NTI5 1447 aa16.02■□□□□ 0.16
VPS13B-212ENST00000524330 CSRNP3Q8WYN3 585 aa16.01■□□□□ 0.15
VPS13B-212ENST00000524330 CUX1P39880 1505 aa15.99■□□□□ 0.15
VPS13B-212ENST00000524330 SOGA1O94964 1423 aa15.98■□□□□ 0.15
VPS13B-212ENST00000524330 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
VPS13B-212ENST00000524330 DNMBPQ6XZF7 1577 aa15.92■□□□□ 0.14
VPS13B-212ENST00000524330 NESP48681 1621 aa15.92■□□□□ 0.14
VPS13B-212ENST00000524330 KIF27Q86VH2 1401 aa15.92■□□□□ 0.14
VPS13B-212ENST00000524330 GOLGA3Q08378 1498 aa15.91■□□□□ 0.14
VPS13B-212ENST00000524330 KIF21BO75037 1637 aa15.88■□□□□ 0.13
VPS13B-212ENST00000524330 RUSC2Q8N2Y8 1516 aa15.86■□□□□ 0.13
VPS13B-212ENST00000524330 TNIKQ9UKE5 1360 aa15.86■□□□□ 0.13
VPS13B-212ENST00000524330 FGD5Q6ZNL6 1462 aa15.85■□□□□ 0.13
VPS13B-212ENST00000524330 TOPBP1Q92547 1522 aa15.85■□□□□ 0.13
VPS13B-212ENST00000524330 UBTFP17480 764 aaKnown RBP15.84■□□□□ 0.13
VPS13B-212ENST00000524330 DNAJC5BQ9UF47 199 aa15.84■□□□□ 0.13
VPS13B-212ENST00000524330 EHMT2Q96KQ7 1210 aa15.82■□□□□ 0.12
VPS13B-212ENST00000524330 CUX2O14529 1486 aa15.79■□□□□ 0.12
VPS13B-212ENST00000524330 ERICH3Q5RHP9 1530 aa15.78■□□□□ 0.12
VPS13B-212ENST00000524330 KIF21AQ7Z4S6 1674 aa15.78■□□□□ 0.12
VPS13B-212ENST00000524330 URB2Q14146 1524 aaKnown RBP15.76■□□□□ 0.11
VPS13B-212ENST00000524330 POLA1P09884 1462 aaPredicted RBP15.76■□□□□ 0.11
VPS13B-212ENST00000524330 MRC2Q9UBG0 1479 aa15.76■□□□□ 0.11
VPS13B-212ENST00000524330 ABCA10Q8WWZ4 1543 aa15.75■□□□□ 0.11
VPS13B-212ENST00000524330 PRXQ9BXM0 1461 aa15.73■□□□□ 0.11
VPS13B-212ENST00000524330 CEP162Q5TB80 1403 aa15.72■□□□□ 0.11
VPS13B-212ENST00000524330 ERCC6Q03468 1493 aa15.71■□□□□ 0.11
VPS13B-212ENST00000524330 RAPGEF2Q9Y4G8 1499 aa15.68■□□□□ 0.1
VPS13B-212ENST00000524330 RAD54L2Q9Y4B4 1467 aa15.66■□□□□ 0.1
VPS13B-212ENST00000524330 IGF1RP08069 1367 aa15.66■□□□□ 0.1
VPS13B-212ENST00000524330 CARMIL1Q5VZK9 1371 aa15.65■□□□□ 0.1
VPS13B-212ENST00000524330 CUL7Q14999 1698 aa15.63■□□□□ 0.09
VPS13B-212ENST00000524330 WDR62O43379 1518 aa15.63■□□□□ 0.09
VPS13B-212ENST00000524330 WDR97A6NE52 1622 aa15.63■□□□□ 0.09
VPS13B-212ENST00000524330 CLIP1P30622 1438 aa15.62■□□□□ 0.09
VPS13B-212ENST00000524330 IFT140Q96RY7 1462 aa15.6■□□□□ 0.09
VPS13B-212ENST00000524330 GAPVD1Q14C86 1478 aa15.59■□□□□ 0.09
VPS13B-212ENST00000524330 ABCA5Q8WWZ7 1642 aa15.57■□□□□ 0.08
VPS13B-212ENST00000524330 TRIM26Q12899 539 aaPredicted RBP15.57■□□□□ 0.08
VPS13B-212ENST00000524330 TARBP1Q13395 1621 aaKnown RBP15.57■□□□□ 0.08
VPS13B-212ENST00000524330 TDRD9Q8NDG6 1382 aaKnown RBP15.53■□□□□ 0.08
VPS13B-212ENST00000524330 APLP2Q06481 763 aa15.53■□□□□ 0.08
VPS13B-212ENST00000524330 THOC2Q8NI27 1593 aaKnown RBP15.52■□□□□ 0.07
VPS13B-212ENST00000524330 GRIN2BQ13224 1484 aa15.49■□□□□ 0.07
VPS13B-212ENST00000524330 VPS8Q8N3P4 1428 aa15.49■□□□□ 0.07
VPS13B-212ENST00000524330 PCGF6Q9BYE7 350 aa15.47■□□□□ 0.07
VPS13B-212ENST00000524330 PBRM1Q86U86 1689 aa15.47■□□□□ 0.07
VPS13B-212ENST00000524330 FHAD1B1AJZ9 1412 aa15.46■□□□□ 0.07
VPS13B-212ENST00000524330 RANGAP1P46060 587 aaPredicted RBP15.44■□□□□ 0.06
VPS13B-212ENST00000524330 CTTNBP2Q8WZ74 1663 aa15.43■□□□□ 0.06
VPS13B-212ENST00000524330 AQRO60306 1485 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS13B-212ENST00000524330 EFCAB5A4FU69 1503 aa15.41■□□□□ 0.06
VPS13B-212ENST00000524330 ADAMTS12P58397 1594 aa15.39■□□□□ 0.05
VPS13B-212ENST00000524330 ARAP1Q96P48 1450 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms