RNA–Protein interactions for RNA: ENST00000523814.5

SPIDR-221, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 5

Gene SPIDR, Length 802 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-221ENST00000523814 NISCHQ9Y2I1 1504 aa41.86■■■■■ 4.29
SPIDR-221ENST00000523814 CCDC180Q9P1Z9 1646 aa37.43■■■■□ 3.58
SPIDR-221ENST00000523814 ABCC9O60706 1549 aa37.31■■■■□ 3.56
SPIDR-221ENST00000523814 RB1CC1Q8TDY2 1594 aa35.59■■■■□ 3.29
SPIDR-221ENST00000523814 NACADO15069 1562 aa35.41■■■■□ 3.26
SPIDR-221ENST00000523814 DCAF8L2P0C7V8 631 aa35.29■■■■□ 3.24
SPIDR-221ENST00000523814 MYO15BQ96JP2 1530 aa35.01■■■■□ 3.19
SPIDR-221ENST00000523814 DNAJC5BQ9UF47 199 aa34.95■■■■□ 3.19
SPIDR-221ENST00000523814 PABPN1Q86U42 306 aaKnown RBP eCLIP34.81■■■■□ 3.16
SPIDR-221ENST00000523814 ZCCHC6Q5VYS8 1495 aaKnown RBP34.7■■■■□ 3.15
SPIDR-221ENST00000523814 UNC13AQ9UPW8 1703 aa34.69■■■■□ 3.14
SPIDR-221ENST00000523814 DCAF1Q9Y4B6 1507 aa34.61■■■■□ 3.13
SPIDR-221ENST00000523814 BICRAQ9NZM4 1560 aa34.55■■■■□ 3.12
SPIDR-221ENST00000523814 SHROOM4Q9ULL8 1493 aa34.13■■■■□ 3.05
SPIDR-221ENST00000523814 SCRIBQ14160 1630 aa34.09■■■■□ 3.05
SPIDR-221ENST00000523814 CC2D2AQ9P2K1 1620 aa33.7■■■□□ 2.99
SPIDR-221ENST00000523814 EIF4G1Q04637 1599 aaKnown RBP33.68■■■□□ 2.98
SPIDR-221ENST00000523814 CECR2Q9BXF3 1484 aa33.62■■■□□ 2.97
SPIDR-221ENST00000523814 NCAPD3P42695 1498 aa32.74■■■□□ 2.83
SPIDR-221ENST00000523814 ATAD2BQ9ULI0 1458 aa32.62■■■□□ 2.81
SPIDR-221ENST00000523814 SMARCA4P51532 1647 aa32.57■■■□□ 2.8
SPIDR-221ENST00000523814 SMARCA2P51531 1590 aa32.52■■■□□ 2.8
SPIDR-221ENST00000523814 BAZ1AQ9NRL2 1556 aaPredicted RBP32.46■■■□□ 2.79
SPIDR-221ENST00000523814 HMGXB3Q12766 1538 aa32.43■■■□□ 2.78
SPIDR-221ENST00000523814 PEG3Q9GZU2 1588 aa32.3■■■□□ 2.76
SPIDR-221ENST00000523814 BAZ1BQ9UIG0 1483 aaKnown RBP32.28■■■□□ 2.76
SPIDR-221ENST00000523814 MROH2BQ7Z745 1585 aa32.24■■■□□ 2.75
SPIDR-221ENST00000523814 ERCC6Q03468 1493 aa32.19■■■□□ 2.74
SPIDR-221ENST00000523814 CUX2O14529 1486 aa32.11■■■□□ 2.73
SPIDR-221ENST00000523814 NESP48681 1621 aa32.1■■■□□ 2.73
SPIDR-221ENST00000523814 DNAJC5Q9H3Z4 198 aa32■■■□□ 2.71
SPIDR-221ENST00000523814 LAMC3Q9Y6N6 1575 aa31.9■■■□□ 2.7
SPIDR-221ENST00000523814 WIZO95785 1651 aa31.82■■■□□ 2.68
SPIDR-221ENST00000523814 PDS5BQ9NTI5 1447 aa31.76■■■□□ 2.68
SPIDR-221ENST00000523814 CADPSQ9ULU8 1353 aa31.74■■■□□ 2.67
SPIDR-221ENST00000523814 THOC2Q8NI27 1593 aaKnown RBP31.69■■■□□ 2.66
SPIDR-221ENST00000523814 RSF1Q96T23 1441 aaPredicted RBP31.67■■■□□ 2.66
SPIDR-221ENST00000523814 KIF21AQ7Z4S6 1674 aa31.62■■■□□ 2.65
SPIDR-221ENST00000523814 TOP2AP11388 1531 aaKnown RBP31.44■■■□□ 2.62
SPIDR-221ENST00000523814 MRC2Q9UBG0 1479 aa31.44■■■□□ 2.62
SPIDR-221ENST00000523814 CFTRP13569 1480 aa31.4■■■□□ 2.62
SPIDR-221ENST00000523814 WDR62O43379 1518 aa31.34■■■□□ 2.61
SPIDR-221ENST00000523814 FANCD2Q9BXW9 1451 aa31.33■■■□□ 2.61
SPIDR-221ENST00000523814 CEP164Q9UPV0 1460 aa31.33■■■□□ 2.61
SPIDR-221ENST00000523814 CCDC88BA6NC98 1476 aa31.14■■■□□ 2.58
SPIDR-221ENST00000523814 URB2Q14146 1524 aaKnown RBP31.06■■■□□ 2.56
SPIDR-221ENST00000523814 PRDM2Q13029 1718 aa30.95■■■□□ 2.55
SPIDR-221ENST00000523814 TOPBP1Q92547 1522 aa30.75■■■□□ 2.51
SPIDR-221ENST00000523814 OSCARQ8IYS5 282 aa30.75■■■□□ 2.51
SPIDR-221ENST00000523814 ABCC8Q09428 1581 aa30.74■■■□□ 2.51
SPIDR-221ENST00000523814 IFT140Q96RY7 1462 aa30.73■■■□□ 2.51
SPIDR-221ENST00000523814 ZNF608Q9ULD9 1512 aaPredicted RBP30.65■■■□□ 2.5
SPIDR-221ENST00000523814 DNMBPQ6XZF7 1577 aa30.63■■■□□ 2.49
SPIDR-221ENST00000523814 TRIM41Q8WV44 630 aa30.58■■■□□ 2.49
SPIDR-221ENST00000523814 TARBP1Q13395 1621 aaKnown RBP30.46■■■□□ 2.47
SPIDR-221ENST00000523814 POLA1P09884 1462 aaPredicted RBP30.45■■■□□ 2.47
SPIDR-221ENST00000523814 EIF4G3O43432 1585 aaKnown RBP30.43■■■□□ 2.46
SPIDR-221ENST00000523814 AQRO60306 1485 aaKnown RBP eCLIP30.42■■■□□ 2.46
SPIDR-221ENST00000523814 SUPT5HO00267 1087 aaKnown RBP30.38■■■□□ 2.45
SPIDR-221ENST00000523814 SOGA1O94964 1423 aa30.36■■■□□ 2.45
SPIDR-221ENST00000523814 RAD54L2Q9Y4B4 1467 aa30.34■■■□□ 2.45
SPIDR-221ENST00000523814 CUX1P39880 1505 aa30.28■■■□□ 2.44
SPIDR-221ENST00000523814 FGD5Q6ZNL6 1462 aa30.27■■■□□ 2.44
SPIDR-221ENST00000523814 TDRD9Q8NDG6 1382 aaKnown RBP30.27■■■□□ 2.44
SPIDR-221ENST00000523814 RIMBP3CA6NJZ7 1639 aa30.21■■■□□ 2.43
SPIDR-221ENST00000523814 RIMBP3BA6NNM3 1639 aa30.21■■■□□ 2.43
SPIDR-221ENST00000523814 RIMBP3Q9UFD9 1639 aa30.21■■■□□ 2.43
SPIDR-221ENST00000523814 FBLN2P98095 1184 aa30.19■■■□□ 2.42
SPIDR-221ENST00000523814 WDR97A6NE52 1622 aa30.16■■■□□ 2.42
SPIDR-221ENST00000523814 ARHGEF11O15085 1522 aa30.16■■■□□ 2.42
SPIDR-221ENST00000523814 CHD1O14646 1710 aa30.15■■■□□ 2.42
SPIDR-221ENST00000523814 SNAPC4Q5SXM2 1469 aa30.06■■■□□ 2.4
SPIDR-221ENST00000523814 GRIN2BQ13224 1484 aa30.06■■■□□ 2.4
SPIDR-221ENST00000523814 MAGI1Q96QZ7 1491 aaPredicted RBP30.02■■■□□ 2.4
SPIDR-221ENST00000523814 CHMP7Q8WUX9 453 aaPredicted RBP30.02■■■□□ 2.4
SPIDR-221ENST00000523814 CYB5RLQ6IPT4 315 aa30■■■□□ 2.39
SPIDR-221ENST00000523814 GAPVD1Q14C86 1478 aa29.97■■■□□ 2.39
SPIDR-221ENST00000523814 ABCA10Q8WWZ4 1543 aa29.96■■■□□ 2.39
SPIDR-221ENST00000523814 SYNJ2O15056 1496 aa29.93■■■□□ 2.38
SPIDR-221ENST00000523814 WRNQ14191 1432 aaPredicted RBP eCLIP29.89■■■□□ 2.38
SPIDR-221ENST00000523814 ARAP1Q96P48 1450 aa29.87■■■□□ 2.37
SPIDR-221ENST00000523814 CLASP1Q7Z460 1538 aa29.87■■■□□ 2.37
SPIDR-221ENST00000523814 SYNJ1O43426 1573 aa29.86■■■□□ 2.37
SPIDR-221ENST00000523814 ABCA5Q8WWZ7 1642 aa29.85■■■□□ 2.37
SPIDR-221ENST00000523814 PBRM1Q86U86 1689 aa29.84■■■□□ 2.37
SPIDR-221ENST00000523814 TOP2BQ02880 1626 aa29.82■■■□□ 2.36
SPIDR-221ENST00000523814 BIVM-ERCC5R4GMW8 1640 aa29.8■■■□□ 2.36
SPIDR-221ENST00000523814 GRIN2AQ12879 1464 aa29.65■■■□□ 2.34
SPIDR-221ENST00000523814 FHAD1B1AJZ9 1412 aa29.6■■■□□ 2.33
SPIDR-221ENST00000523814 ADAMTS12P58397 1594 aa29.6■■■□□ 2.33
SPIDR-221ENST00000523814 ERICH3Q5RHP9 1530 aa29.59■■■□□ 2.33
SPIDR-221ENST00000523814 TRHP20396 242 aaPredicted RBP29.58■■■□□ 2.33
SPIDR-221ENST00000523814 NUP160Q12769 1436 aa29.57■■■□□ 2.32
SPIDR-221ENST00000523814 CEP170Q5SW79 1584 aa29.5■■■□□ 2.31
SPIDR-221ENST00000523814 ERCC6L2Q5T890 1561 aa29.41■■■□□ 2.3
SPIDR-221ENST00000523814 SHROOM2Q13796 1616 aa29.38■■■□□ 2.29
SPIDR-221ENST00000523814 JPH4Q96JJ6 628 aa29.32■■■□□ 2.28
SPIDR-221ENST00000523814 IGF1RP08069 1367 aa29.31■■■□□ 2.28
SPIDR-221ENST00000523814 KIF27Q86VH2 1401 aa29.28■■■□□ 2.28
SPIDR-221ENST00000523814 PRG4Q92954 1404 aaPredicted RBP29.27■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms