RNA–Protein interactions for RNA: ENST00000523328.5

PVT1-218, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best)

Gene PVT1, Length 343 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-218ENST00000523328 NISCHQ9Y2I1 1504 aa57.76■■■■■ 6.84
PVT1-218ENST00000523328 ABCC9O60706 1549 aa52.3■■■■■ 5.96
PVT1-218ENST00000523328 CCDC180Q9P1Z9 1646 aa52■■■■■ 5.92
PVT1-218ENST00000523328 RB1CC1Q8TDY2 1594 aa49.64■■■■■ 5.54
PVT1-218ENST00000523328 DNAJC5BQ9UF47 199 aa49.41■■■■■ 5.5
PVT1-218ENST00000523328 NACADO15069 1562 aa49.22■■■■■ 5.47
PVT1-218ENST00000523328 DCAF8L2P0C7V8 631 aa48.79■■■■■ 5.4
PVT1-218ENST00000523328 PABPN1Q86U42 306 aaKnown RBP eCLIP48.61■■■■■ 5.37
PVT1-218ENST00000523328 UNC13AQ9UPW8 1703 aa48.61■■■■■ 5.37
PVT1-218ENST00000523328 MYO15BQ96JP2 1530 aa48.45■■■■■ 5.35
PVT1-218ENST00000523328 BICRAQ9NZM4 1560 aa48.26■■■■■ 5.32
PVT1-218ENST00000523328 ZCCHC6Q5VYS8 1495 aaKnown RBP47.8■■■■■ 5.24
PVT1-218ENST00000523328 DCAF1Q9Y4B6 1507 aa47.7■■■■■ 5.23
PVT1-218ENST00000523328 SHROOM4Q9ULL8 1493 aa47.53■■■■■ 5.2
PVT1-218ENST00000523328 SCRIBQ14160 1630 aa47.33■■■■■ 5.17
PVT1-218ENST00000523328 CC2D2AQ9P2K1 1620 aa47.26■■■■■ 5.16
PVT1-218ENST00000523328 CECR2Q9BXF3 1484 aa47.15■■■■■ 5.14
PVT1-218ENST00000523328 EIF4G1Q04637 1599 aaKnown RBP47.07■■■■■ 5.13
PVT1-218ENST00000523328 DNAJC5Q9H3Z4 198 aa45.59■■■■■ 4.89
PVT1-218ENST00000523328 NCAPD3P42695 1498 aa45.45■■■■■ 4.87
PVT1-218ENST00000523328 ATAD2BQ9ULI0 1458 aa45.26■■■■■ 4.84
PVT1-218ENST00000523328 CUX2O14529 1486 aa45.23■■■■■ 4.83
PVT1-218ENST00000523328 ERCC6Q03468 1493 aa45.15■■■■■ 4.82
PVT1-218ENST00000523328 SMARCA4P51532 1647 aa45.14■■■■■ 4.82
PVT1-218ENST00000523328 SMARCA2P51531 1590 aa45.1■■■■■ 4.81
PVT1-218ENST00000523328 HMGXB3Q12766 1538 aa45.09■■■■■ 4.81
PVT1-218ENST00000523328 NESP48681 1621 aa44.85■■■■■ 4.77
PVT1-218ENST00000523328 BAZ1AQ9NRL2 1556 aaPredicted RBP44.84■■■■■ 4.77
PVT1-218ENST00000523328 BAZ1BQ9UIG0 1483 aaKnown RBP44.78■■■■■ 4.76
PVT1-218ENST00000523328 PEG3Q9GZU2 1588 aa44.73■■■■■ 4.75
PVT1-218ENST00000523328 MROH2BQ7Z745 1585 aa44.51■■■■■ 4.72
PVT1-218ENST00000523328 THOC2Q8NI27 1593 aaKnown RBP44.5■■■■■ 4.71
PVT1-218ENST00000523328 LAMC3Q9Y6N6 1575 aa44.48■■■■■ 4.71
PVT1-218ENST00000523328 KIF21AQ7Z4S6 1674 aa44.29■■■■■ 4.68
PVT1-218ENST00000523328 PDS5BQ9NTI5 1447 aa44.19■■■■■ 4.66
PVT1-218ENST00000523328 CADPSQ9ULU8 1353 aa44.03■■■■■ 4.64
PVT1-218ENST00000523328 WIZO95785 1651 aa43.96■■■■■ 4.63
PVT1-218ENST00000523328 MRC2Q9UBG0 1479 aa43.86■■■■■ 4.61
PVT1-218ENST00000523328 WDR62O43379 1518 aa43.79■■■■■ 4.6
PVT1-218ENST00000523328 CEP164Q9UPV0 1460 aa43.6■■■■■ 4.57
PVT1-218ENST00000523328 FANCD2Q9BXW9 1451 aa43.53■■■■■ 4.56
PVT1-218ENST00000523328 CFTRP13569 1480 aa43.48■■■■■ 4.55
PVT1-218ENST00000523328 RSF1Q96T23 1441 aaPredicted RBP43.44■■■■■ 4.54
PVT1-218ENST00000523328 TRIM41Q8WV44 630 aa43.4■■■■■ 4.54
PVT1-218ENST00000523328 TOP2AP11388 1531 aaKnown RBP43.37■■■■■ 4.53
PVT1-218ENST00000523328 URB2Q14146 1524 aaKnown RBP43.22■■■■■ 4.51
PVT1-218ENST00000523328 PRDM2Q13029 1718 aa43.06■■■■■ 4.48
PVT1-218ENST00000523328 OSCARQ8IYS5 282 aa43.06■■■■■ 4.48
PVT1-218ENST00000523328 CCDC88BA6NC98 1476 aa42.87■■■■■ 4.45
PVT1-218ENST00000523328 IFT140Q96RY7 1462 aa42.74■■■■■ 4.43
PVT1-218ENST00000523328 ZNF608Q9ULD9 1512 aaPredicted RBP42.74■■■■■ 4.43
PVT1-218ENST00000523328 TOPBP1Q92547 1522 aa42.69■■■■■ 4.42
PVT1-218ENST00000523328 RIMBP3CA6NJZ7 1639 aa42.61■■■■■ 4.41
PVT1-218ENST00000523328 RIMBP3BA6NNM3 1639 aa42.61■■■■■ 4.41
PVT1-218ENST00000523328 RIMBP3Q9UFD9 1639 aa42.61■■■■■ 4.41
PVT1-218ENST00000523328 ABCC8Q09428 1581 aa42.54■■■■■ 4.4
PVT1-218ENST00000523328 EIF4G3O43432 1585 aaKnown RBP42.5■■■■■ 4.39
PVT1-218ENST00000523328 DNMBPQ6XZF7 1577 aa42.5■■■■■ 4.39
PVT1-218ENST00000523328 ARHGEF11O15085 1522 aa42.43■■■■■ 4.38
PVT1-218ENST00000523328 TARBP1Q13395 1621 aaKnown RBP42.37■■■■■ 4.37
PVT1-218ENST00000523328 AQRO60306 1485 aaKnown RBP eCLIP42.3■■■■■ 4.36
PVT1-218ENST00000523328 CHD1O14646 1710 aa42.27■■■■■ 4.36
PVT1-218ENST00000523328 POLA1P09884 1462 aaPredicted RBP42.23■■■■■ 4.35
PVT1-218ENST00000523328 CYB5RLQ6IPT4 315 aa42.08■■■■■ 4.33
PVT1-218ENST00000523328 RAD54L2Q9Y4B4 1467 aa42.08■■■■■ 4.33
PVT1-218ENST00000523328 FBLN2P98095 1184 aa42.02■■■■■ 4.32
PVT1-218ENST00000523328 SOGA1O94964 1423 aa42■■■■■ 4.31
PVT1-218ENST00000523328 ARAP1Q96P48 1450 aa41.99■■■■■ 4.31
PVT1-218ENST00000523328 TDRD9Q8NDG6 1382 aaKnown RBP41.96■■■■■ 4.31
PVT1-218ENST00000523328 FGD5Q6ZNL6 1462 aa41.91■■■■■ 4.3
PVT1-218ENST00000523328 WDR97A6NE52 1622 aa41.89■■■■■ 4.3
PVT1-218ENST00000523328 SNAPC4Q5SXM2 1469 aa41.85■■■■■ 4.29
PVT1-218ENST00000523328 CUX1P39880 1505 aa41.84■■■■■ 4.29
PVT1-218ENST00000523328 CLASP1Q7Z460 1538 aa41.77■■■■■ 4.28
PVT1-218ENST00000523328 MAGI1Q96QZ7 1491 aaPredicted RBP41.73■■■■■ 4.27
PVT1-218ENST00000523328 TRHP20396 242 aaPredicted RBP41.69■■■■■ 4.26
PVT1-218ENST00000523328 GRIN2BQ13224 1484 aa41.68■■■■■ 4.26
PVT1-218ENST00000523328 SYNJ1O43426 1573 aa41.67■■■■■ 4.26
PVT1-218ENST00000523328 CHMP7Q8WUX9 453 aaPredicted RBP41.66■■■■■ 4.26
PVT1-218ENST00000523328 SYNJ2O15056 1496 aa41.6■■■■■ 4.25
PVT1-218ENST00000523328 PBRM1Q86U86 1689 aa41.55■■■■■ 4.24
PVT1-218ENST00000523328 GAPVD1Q14C86 1478 aa41.49■■■■■ 4.23
PVT1-218ENST00000523328 ABCA10Q8WWZ4 1543 aa41.43■■■■■ 4.22
PVT1-218ENST00000523328 ABCA5Q8WWZ7 1642 aa41.42■■■■■ 4.22
PVT1-218ENST00000523328 SUPT5HO00267 1087 aaKnown RBP41.17■■■■■ 4.18
PVT1-218ENST00000523328 GRIN2AQ12879 1464 aa41.16■■■■■ 4.18
PVT1-218ENST00000523328 WRNQ14191 1432 aaPredicted RBP eCLIP41.15■■■■■ 4.18
PVT1-218ENST00000523328 ADAMTS12P58397 1594 aa41.12■■■■■ 4.17
PVT1-218ENST00000523328 ERCC6L2Q5T890 1561 aa41.1■■■■■ 4.17
PVT1-218ENST00000523328 BIVM-ERCC5R4GMW8 1640 aa41.09■■■■■ 4.17
PVT1-218ENST00000523328 TOP2BQ02880 1626 aa41.07■■■■■ 4.16
PVT1-218ENST00000523328 NUP160Q12769 1436 aa41.06■■■■■ 4.16
PVT1-218ENST00000523328 CEP170Q5SW79 1584 aa41.06■■■■■ 4.16
PVT1-218ENST00000523328 FHAD1B1AJZ9 1412 aa40.95■■■■■ 4.15
PVT1-218ENST00000523328 SHROOM2Q13796 1616 aa40.94■■■■■ 4.14
PVT1-218ENST00000523328 ERICH3Q5RHP9 1530 aa40.89■■■■■ 4.14
PVT1-218ENST00000523328 AEBP2Q6ZN18 517 aaPredicted RBP40.71■■■■■ 4.11
PVT1-218ENST00000523328 PRG4Q92954 1404 aaPredicted RBP40.66■■■■■ 4.1
PVT1-218ENST00000523328 KIF13AQ9H1H9 1805 aa40.6■■■■■ 4.09
PVT1-218ENST00000523328 JPH4Q96JJ6 628 aa40.58■■■■■ 4.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms