RNA–Protein interactions for RNA: ENST00000523237.1

CLN8-206, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 3

Gene CLN8, Length 835 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-206ENST00000523237 NISCHQ9Y2I1 1504 aa40.07■■■■■ 4.01
CLN8-206ENST00000523237 CCDC180Q9P1Z9 1646 aa35.86■■■■□ 3.33
CLN8-206ENST00000523237 ABCC9O60706 1549 aa35.41■■■■□ 3.26
CLN8-206ENST00000523237 RB1CC1Q8TDY2 1594 aa33.93■■■■□ 3.02
CLN8-206ENST00000523237 NACADO15069 1562 aa33.78■■■■□ 3
CLN8-206ENST00000523237 DCAF8L2P0C7V8 631 aa33.63■■■□□ 2.97
CLN8-206ENST00000523237 MYO15BQ96JP2 1530 aa33.44■■■□□ 2.94
CLN8-206ENST00000523237 ZCCHC6Q5VYS8 1495 aaKnown RBP33.3■■■□□ 2.92
CLN8-206ENST00000523237 UNC13AQ9UPW8 1703 aa33.19■■■□□ 2.9
CLN8-206ENST00000523237 DCAF1Q9Y4B6 1507 aa33.15■■■□□ 2.9
CLN8-206ENST00000523237 PABPN1Q86U42 306 aaKnown RBP eCLIP32.99■■■□□ 2.87
CLN8-206ENST00000523237 BICRAQ9NZM4 1560 aa32.88■■■□□ 2.85
CLN8-206ENST00000523237 DNAJC5BQ9UF47 199 aa32.8■■■□□ 2.84
CLN8-206ENST00000523237 SCRIBQ14160 1630 aa32.66■■■□□ 2.82
CLN8-206ENST00000523237 SHROOM4Q9ULL8 1493 aa32.53■■■□□ 2.8
CLN8-206ENST00000523237 EIF4G1Q04637 1599 aaKnown RBP32.06■■■□□ 2.72
CLN8-206ENST00000523237 CC2D2AQ9P2K1 1620 aa32.04■■■□□ 2.72
CLN8-206ENST00000523237 CECR2Q9BXF3 1484 aa31.86■■■□□ 2.69
CLN8-206ENST00000523237 SMARCA4P51532 1647 aa31.2■■■□□ 2.59
CLN8-206ENST00000523237 NCAPD3P42695 1498 aa31.14■■■□□ 2.58
CLN8-206ENST00000523237 BAZ1AQ9NRL2 1556 aaPredicted RBP31.12■■■□□ 2.57
CLN8-206ENST00000523237 ATAD2BQ9ULI0 1458 aa31.1■■■□□ 2.57
CLN8-206ENST00000523237 SMARCA2P51531 1590 aa31.08■■■□□ 2.57
CLN8-206ENST00000523237 HMGXB3Q12766 1538 aa30.98■■■□□ 2.55
CLN8-206ENST00000523237 PEG3Q9GZU2 1588 aa30.9■■■□□ 2.54
CLN8-206ENST00000523237 MROH2BQ7Z745 1585 aa30.87■■■□□ 2.53
CLN8-206ENST00000523237 BAZ1BQ9UIG0 1483 aaKnown RBP30.85■■■□□ 2.53
CLN8-206ENST00000523237 ERCC6Q03468 1493 aa30.57■■■□□ 2.48
CLN8-206ENST00000523237 WIZO95785 1651 aa30.55■■■□□ 2.48
CLN8-206ENST00000523237 NESP48681 1621 aa30.52■■■□□ 2.48
CLN8-206ENST00000523237 LAMC3Q9Y6N6 1575 aa30.43■■■□□ 2.46
CLN8-206ENST00000523237 CUX2O14529 1486 aa30.39■■■□□ 2.46
CLN8-206ENST00000523237 RSF1Q96T23 1441 aaPredicted RBP30.36■■■□□ 2.45
CLN8-206ENST00000523237 CADPSQ9ULU8 1353 aa30.22■■■□□ 2.43
CLN8-206ENST00000523237 PDS5BQ9NTI5 1447 aa30.22■■■□□ 2.43
CLN8-206ENST00000523237 KIF21AQ7Z4S6 1674 aa30.2■■■□□ 2.42
CLN8-206ENST00000523237 TOP2AP11388 1531 aaKnown RBP30.19■■■□□ 2.42
CLN8-206ENST00000523237 THOC2Q8NI27 1593 aaKnown RBP30.17■■■□□ 2.42
CLN8-206ENST00000523237 CFTRP13569 1480 aa29.96■■■□□ 2.39
CLN8-206ENST00000523237 MRC2Q9UBG0 1479 aa29.93■■■□□ 2.38
CLN8-206ENST00000523237 CEP164Q9UPV0 1460 aa29.9■■■□□ 2.38
CLN8-206ENST00000523237 DNAJC5Q9H3Z4 198 aa29.89■■■□□ 2.38
CLN8-206ENST00000523237 FANCD2Q9BXW9 1451 aa29.88■■■□□ 2.37
CLN8-206ENST00000523237 WDR62O43379 1518 aa29.85■■■□□ 2.37
CLN8-206ENST00000523237 CCDC88BA6NC98 1476 aa29.81■■■□□ 2.36
CLN8-206ENST00000523237 PRDM2Q13029 1718 aa29.79■■■□□ 2.36
CLN8-206ENST00000523237 URB2Q14146 1524 aaKnown RBP29.6■■■□□ 2.33
CLN8-206ENST00000523237 TOPBP1Q92547 1522 aa29.36■■■□□ 2.29
CLN8-206ENST00000523237 ABCC8Q09428 1581 aa29.36■■■□□ 2.29
CLN8-206ENST00000523237 DNMBPQ6XZF7 1577 aa29.31■■■□□ 2.28
CLN8-206ENST00000523237 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
CLN8-206ENST00000523237 IFT140Q96RY7 1462 aa29.28■■■□□ 2.28
CLN8-206ENST00000523237 ZNF608Q9ULD9 1512 aaPredicted RBP29.16■■■□□ 2.26
CLN8-206ENST00000523237 TARBP1Q13395 1621 aaKnown RBP29.09■■■□□ 2.25
CLN8-206ENST00000523237 POLA1P09884 1462 aaPredicted RBP29.08■■■□□ 2.25
CLN8-206ENST00000523237 EIF4G3O43432 1585 aaKnown RBP29.07■■■□□ 2.24
CLN8-206ENST00000523237 OSCARQ8IYS5 282 aa29.05■■■□□ 2.24
CLN8-206ENST00000523237 CUX1P39880 1505 aa28.99■■■□□ 2.23
CLN8-206ENST00000523237 FGD5Q6ZNL6 1462 aa28.96■■■□□ 2.23
CLN8-206ENST00000523237 SOGA1O94964 1423 aa28.95■■■□□ 2.23
CLN8-206ENST00000523237 RAD54L2Q9Y4B4 1467 aa28.95■■■□□ 2.22
CLN8-206ENST00000523237 AQRO60306 1485 aaKnown RBP eCLIP28.94■■■□□ 2.22
CLN8-206ENST00000523237 WDR97A6NE52 1622 aa28.86■■■□□ 2.21
CLN8-206ENST00000523237 TDRD9Q8NDG6 1382 aaKnown RBP28.83■■■□□ 2.21
CLN8-206ENST00000523237 CHD1O14646 1710 aa28.8■■■□□ 2.2
CLN8-206ENST00000523237 TRIM41Q8WV44 630 aa28.74■■■□□ 2.19
CLN8-206ENST00000523237 FBLN2P98095 1184 aa28.69■■■□□ 2.18
CLN8-206ENST00000523237 SNAPC4Q5SXM2 1469 aa28.69■■■□□ 2.18
CLN8-206ENST00000523237 BIVM-ERCC5R4GMW8 1640 aa28.68■■■□□ 2.18
CLN8-206ENST00000523237 GRIN2BQ13224 1484 aa28.67■■■□□ 2.18
CLN8-206ENST00000523237 TOP2BQ02880 1626 aa28.66■■■□□ 2.18
CLN8-206ENST00000523237 ABCA10Q8WWZ4 1543 aa28.66■■■□□ 2.18
CLN8-206ENST00000523237 WRNQ14191 1432 aaPredicted RBP eCLIP28.66■■■□□ 2.18
CLN8-206ENST00000523237 RIMBP3CA6NJZ7 1639 aa28.65■■■□□ 2.18
CLN8-206ENST00000523237 RIMBP3BA6NNM3 1639 aa28.65■■■□□ 2.18
CLN8-206ENST00000523237 RIMBP3Q9UFD9 1639 aa28.65■■■□□ 2.18
CLN8-206ENST00000523237 MAGI1Q96QZ7 1491 aaPredicted RBP28.65■■■□□ 2.18
CLN8-206ENST00000523237 PBRM1Q86U86 1689 aa28.64■■■□□ 2.17
CLN8-206ENST00000523237 GAPVD1Q14C86 1478 aa28.62■■■□□ 2.17
CLN8-206ENST00000523237 SYNJ1O43426 1573 aa28.62■■■□□ 2.17
CLN8-206ENST00000523237 ABCA5Q8WWZ7 1642 aa28.6■■■□□ 2.17
CLN8-206ENST00000523237 ARHGEF11O15085 1522 aa28.59■■■□□ 2.17
CLN8-206ENST00000523237 CHMP7Q8WUX9 453 aaPredicted RBP28.55■■■□□ 2.16
CLN8-206ENST00000523237 SYNJ2O15056 1496 aa28.53■■■□□ 2.16
CLN8-206ENST00000523237 CLASP1Q7Z460 1538 aa28.44■■■□□ 2.14
CLN8-206ENST00000523237 ADAMTS12P58397 1594 aa28.35■■■□□ 2.13
CLN8-206ENST00000523237 ERICH3Q5RHP9 1530 aa28.33■■■□□ 2.13
CLN8-206ENST00000523237 CYB5RLQ6IPT4 315 aa28.32■■■□□ 2.12
CLN8-206ENST00000523237 ARAP1Q96P48 1450 aa28.32■■■□□ 2.12
CLN8-206ENST00000523237 GRIN2AQ12879 1464 aa28.3■■■□□ 2.12
CLN8-206ENST00000523237 FHAD1B1AJZ9 1412 aa28.27■■■□□ 2.12
CLN8-206ENST00000523237 NUP160Q12769 1436 aa28.18■■■□□ 2.1
CLN8-206ENST00000523237 CEP170Q5SW79 1584 aa28.18■■■□□ 2.1
CLN8-206ENST00000523237 KIF27Q86VH2 1401 aa28.09■■■□□ 2.09
CLN8-206ENST00000523237 SHROOM2Q13796 1616 aa28.05■■■□□ 2.08
CLN8-206ENST00000523237 CUL7Q14999 1698 aa28.02■■■□□ 2.08
CLN8-206ENST00000523237 IGF1RP08069 1367 aa28■■■□□ 2.07
CLN8-206ENST00000523237 ERCC6L2Q5T890 1561 aa28■■■□□ 2.07
CLN8-206ENST00000523237 RUSC2Q8N2Y8 1516 aa27.94■■■□□ 2.06
CLN8-206ENST00000523237 TRHP20396 242 aaPredicted RBP27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms