RNA–Protein interactions for RNA: ENST00000523055.5

PCM1-218, Transcript of pericentriolar material 1, humanhuman

TSL 1 (best)

Gene PCM1, Length 1,426 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-218ENST00000523055 NISCHQ9Y2I1 1504 aa37.68■■■■□ 3.62
PCM1-218ENST00000523055 ABCC9O60706 1549 aa34.67■■■■□ 3.14
PCM1-218ENST00000523055 CCDC180Q9P1Z9 1646 aa34.01■■■■□ 3.03
PCM1-218ENST00000523055 DNAJC5BQ9UF47 199 aa33.2■■■□□ 2.91
PCM1-218ENST00000523055 RB1CC1Q8TDY2 1594 aa32.67■■■□□ 2.82
PCM1-218ENST00000523055 NACADO15069 1562 aa32.32■■■□□ 2.76
PCM1-218ENST00000523055 PABPN1Q86U42 306 aaKnown RBP eCLIP32.2■■■□□ 2.75
PCM1-218ENST00000523055 UNC13AQ9UPW8 1703 aa31.98■■■□□ 2.71
PCM1-218ENST00000523055 DCAF8L2P0C7V8 631 aa31.97■■■□□ 2.71
PCM1-218ENST00000523055 BICRAQ9NZM4 1560 aa31.86■■■□□ 2.69
PCM1-218ENST00000523055 MYO15BQ96JP2 1530 aa31.72■■■□□ 2.67
PCM1-218ENST00000523055 CECR2Q9BXF3 1484 aa31.28■■■□□ 2.6
PCM1-218ENST00000523055 CC2D2AQ9P2K1 1620 aa31.28■■■□□ 2.6
PCM1-218ENST00000523055 SHROOM4Q9ULL8 1493 aa31.27■■■□□ 2.6
PCM1-218ENST00000523055 ZCCHC6Q5VYS8 1495 aaKnown RBP31.11■■■□□ 2.57
PCM1-218ENST00000523055 DCAF1Q9Y4B6 1507 aa31.08■■■□□ 2.57
PCM1-218ENST00000523055 EIF4G1Q04637 1599 aaKnown RBP31.07■■■□□ 2.56
PCM1-218ENST00000523055 SCRIBQ14160 1630 aa30.97■■■□□ 2.55
PCM1-218ENST00000523055 DNAJC5Q9H3Z4 198 aa30.85■■■□□ 2.53
PCM1-218ENST00000523055 CUX2O14529 1486 aa30.1■■■□□ 2.41
PCM1-218ENST00000523055 NCAPD3P42695 1498 aa29.91■■■□□ 2.38
PCM1-218ENST00000523055 ERCC6Q03468 1493 aa29.89■■■□□ 2.38
PCM1-218ENST00000523055 ATAD2BQ9ULI0 1458 aa29.73■■■□□ 2.35
PCM1-218ENST00000523055 NESP48681 1621 aa29.65■■■□□ 2.34
PCM1-218ENST00000523055 HMGXB3Q12766 1538 aa29.58■■■□□ 2.33
PCM1-218ENST00000523055 SMARCA2P51531 1590 aa29.53■■■□□ 2.32
PCM1-218ENST00000523055 SMARCA4P51532 1647 aa29.5■■■□□ 2.31
PCM1-218ENST00000523055 THOC2Q8NI27 1593 aaKnown RBP29.44■■■□□ 2.3
PCM1-218ENST00000523055 BAZ1BQ9UIG0 1483 aaKnown RBP29.34■■■□□ 2.29
PCM1-218ENST00000523055 LAMC3Q9Y6N6 1575 aa29.26■■■□□ 2.27
PCM1-218ENST00000523055 PEG3Q9GZU2 1588 aa29.25■■■□□ 2.27
PCM1-218ENST00000523055 BAZ1AQ9NRL2 1556 aaPredicted RBP29.24■■■□□ 2.27
PCM1-218ENST00000523055 KIF21AQ7Z4S6 1674 aa29.18■■■□□ 2.26
PCM1-218ENST00000523055 TRIM41Q8WV44 630 aa29.15■■■□□ 2.26
PCM1-218ENST00000523055 PDS5BQ9NTI5 1447 aa29.1■■■□□ 2.25
PCM1-218ENST00000523055 MROH2BQ7Z745 1585 aa29.05■■■□□ 2.24
PCM1-218ENST00000523055 CADPSQ9ULU8 1353 aa28.95■■■□□ 2.22
PCM1-218ENST00000523055 MRC2Q9UBG0 1479 aa28.92■■■□□ 2.22
PCM1-218ENST00000523055 WDR62O43379 1518 aa28.89■■■□□ 2.22
PCM1-218ENST00000523055 CEP164Q9UPV0 1460 aa28.66■■■□□ 2.18
PCM1-218ENST00000523055 WIZO95785 1651 aa28.64■■■□□ 2.18
PCM1-218ENST00000523055 OSCARQ8IYS5 282 aa28.62■■■□□ 2.17
PCM1-218ENST00000523055 FANCD2Q9BXW9 1451 aa28.6■■■□□ 2.17
PCM1-218ENST00000523055 CFTRP13569 1480 aa28.51■■■□□ 2.15
PCM1-218ENST00000523055 URB2Q14146 1524 aaKnown RBP28.45■■■□□ 2.14
PCM1-218ENST00000523055 RIMBP3CA6NJZ7 1639 aa28.34■■■□□ 2.13
PCM1-218ENST00000523055 RIMBP3BA6NNM3 1639 aa28.34■■■□□ 2.13
PCM1-218ENST00000523055 RIMBP3Q9UFD9 1639 aa28.34■■■□□ 2.13
PCM1-218ENST00000523055 RSF1Q96T23 1441 aaPredicted RBP28.23■■■□□ 2.11
PCM1-218ENST00000523055 TOP2AP11388 1531 aaKnown RBP28.21■■■□□ 2.11
PCM1-218ENST00000523055 ZNF608Q9ULD9 1512 aaPredicted RBP28.21■■■□□ 2.11
PCM1-218ENST00000523055 ARHGEF11O15085 1522 aa28.2■■■□□ 2.11
PCM1-218ENST00000523055 IFT140Q96RY7 1462 aa28.12■■■□□ 2.09
PCM1-218ENST00000523055 PRDM2Q13029 1718 aa28.06■■■□□ 2.08
PCM1-218ENST00000523055 CYB5RLQ6IPT4 315 aa28.01■■■□□ 2.07
PCM1-218ENST00000523055 TOPBP1Q92547 1522 aa28■■■□□ 2.07
PCM1-218ENST00000523055 EIF4G3O43432 1585 aaKnown RBP27.96■■■□□ 2.07
PCM1-218ENST00000523055 CCDC88BA6NC98 1476 aa27.94■■■□□ 2.06
PCM1-218ENST00000523055 ARAP1Q96P48 1450 aa27.91■■■□□ 2.06
PCM1-218ENST00000523055 AQRO60306 1485 aaKnown RBP eCLIP27.85■■■□□ 2.052e-8■■■■■ 32.2
PCM1-218ENST00000523055 CHD1O14646 1710 aa27.85■■■□□ 2.05
PCM1-218ENST00000523055 ABCC8Q09428 1581 aa27.83■■■□□ 2.05
PCM1-218ENST00000523055 TARBP1Q13395 1621 aaKnown RBP27.82■■■□□ 2.04
PCM1-218ENST00000523055 TRHP20396 242 aaPredicted RBP27.82■■■□□ 2.04
PCM1-218ENST00000523055 DNMBPQ6XZF7 1577 aa27.81■■■□□ 2.04
PCM1-218ENST00000523055 FBLN2P98095 1184 aa27.69■■■□□ 2.02
PCM1-218ENST00000523055 POLA1P09884 1462 aaPredicted RBP27.69■■■□□ 2.02
PCM1-218ENST00000523055 RAD54L2Q9Y4B4 1467 aa27.61■■■□□ 2.01
PCM1-218ENST00000523055 TDRD9Q8NDG6 1382 aaKnown RBP27.58■■■□□ 2.01
PCM1-218ENST00000523055 CLASP1Q7Z460 1538 aa27.57■■■□□ 2
PCM1-218ENST00000523055 SNAPC4Q5SXM2 1469 aa27.52■■■□□ 2
PCM1-218ENST00000523055 SOGA1O94964 1423 aa27.52■■■□□ 2
PCM1-218ENST00000523055 SYNJ1O43426 1573 aa27.42■■□□□ 1.98
PCM1-218ENST00000523055 AEBP2Q6ZN18 517 aaPredicted RBP27.41■■□□□ 1.98
PCM1-218ENST00000523055 WDR97A6NE52 1622 aa27.41■■□□□ 1.98
PCM1-218ENST00000523055 FGD5Q6ZNL6 1462 aa27.41■■□□□ 1.98
PCM1-218ENST00000523055 CHMP7Q8WUX9 453 aaPredicted RBP27.41■■□□□ 1.98
PCM1-218ENST00000523055 MAGI1Q96QZ7 1491 aaPredicted RBP27.4■■□□□ 1.98
PCM1-218ENST00000523055 GRIN2BQ13224 1484 aa27.34■■□□□ 1.97
PCM1-218ENST00000523055 SYNJ2O15056 1496 aa27.33■■□□□ 1.97
PCM1-218ENST00000523055 CUX1P39880 1505 aa27.32■■□□□ 1.96
PCM1-218ENST00000523055 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
PCM1-218ENST00000523055 SUPT5HO00267 1087 aaKnown RBP27.29■■□□□ 1.96
PCM1-218ENST00000523055 PBRM1Q86U86 1689 aa27.16■■□□□ 1.94
PCM1-218ENST00000523055 ERCC6L2Q5T890 1561 aa27.14■■□□□ 1.94
PCM1-218ENST00000523055 ABCA5Q8WWZ7 1642 aa27.08■■□□□ 1.93
PCM1-218ENST00000523055 ABCA10Q8WWZ4 1543 aa27.07■■□□□ 1.92
PCM1-218ENST00000523055 GRIN2AQ12879 1464 aa27.01■■□□□ 1.91
PCM1-218ENST00000523055 NUP160Q12769 1436 aa26.99■■□□□ 1.91
PCM1-218ENST00000523055 CEP170Q5SW79 1584 aa26.98■■□□□ 1.91
PCM1-218ENST00000523055 SHROOM2Q13796 1616 aa26.91■■□□□ 1.9
PCM1-218ENST00000523055 ADAMTS12P58397 1594 aa26.91■■□□□ 1.9
PCM1-218ENST00000523055 KIF13AQ9H1H9 1805 aa26.88■■□□□ 1.89
PCM1-218ENST00000523055 FHAD1B1AJZ9 1412 aa26.8■■□□□ 1.88
PCM1-218ENST00000523055 WRNQ14191 1432 aaPredicted RBP eCLIP26.79■■□□□ 1.88
PCM1-218ENST00000523055 PRG4Q92954 1404 aaPredicted RBP26.72■■□□□ 1.87
PCM1-218ENST00000523055 ERICH3Q5RHP9 1530 aa26.69■■□□□ 1.86
PCM1-218ENST00000523055 ABCC10Q5T3U5 1492 aa26.68■■□□□ 1.86
PCM1-218ENST00000523055 TOP2BQ02880 1626 aa26.67■■□□□ 1.86
PCM1-218ENST00000523055 BIVM-ERCC5R4GMW8 1640 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms