RNA–Protein interactions for RNA: ENST00000522900.5

SPIDR-220, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 3

Gene SPIDR, Length 692 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-220ENST00000522900 NISCHQ9Y2I1 1504 aa46.14■■■■■ 4.98
SPIDR-220ENST00000522900 CCDC180Q9P1Z9 1646 aa41.07■■■■■ 4.17
SPIDR-220ENST00000522900 ABCC9O60706 1549 aa40.85■■■■■ 4.13
SPIDR-220ENST00000522900 RB1CC1Q8TDY2 1594 aa38.96■■■■□ 3.83
SPIDR-220ENST00000522900 DCAF8L2P0C7V8 631 aa38.92■■■■□ 3.82
SPIDR-220ENST00000522900 NACADO15069 1562 aa38.8■■■■□ 3.8
SPIDR-220ENST00000522900 MYO15BQ96JP2 1530 aa38.4■■■■□ 3.74
SPIDR-220ENST00000522900 ZCCHC6Q5VYS8 1495 aaKnown RBP38.31■■■■□ 3.72
SPIDR-220ENST00000522900 PABPN1Q86U42 306 aaKnown RBP eCLIP38.2■■■■□ 3.71
SPIDR-220ENST00000522900 DCAF1Q9Y4B6 1507 aa38.07■■■■□ 3.69
SPIDR-220ENST00000522900 DNAJC5BQ9UF47 199 aa38.07■■■■□ 3.68
SPIDR-220ENST00000522900 UNC13AQ9UPW8 1703 aa38.04■■■■□ 3.68
SPIDR-220ENST00000522900 BICRAQ9NZM4 1560 aa37.88■■■■□ 3.65
SPIDR-220ENST00000522900 SCRIBQ14160 1630 aa37.58■■■■□ 3.61
SPIDR-220ENST00000522900 SHROOM4Q9ULL8 1493 aa37.29■■■■□ 3.56
SPIDR-220ENST00000522900 EIF4G1Q04637 1599 aaKnown RBP36.88■■■■□ 3.49
SPIDR-220ENST00000522900 CC2D2AQ9P2K1 1620 aa36.85■■■■□ 3.49
SPIDR-220ENST00000522900 CECR2Q9BXF3 1484 aa36.72■■■■□ 3.47
SPIDR-220ENST00000522900 NCAPD3P42695 1498 aa35.89■■■■□ 3.34
SPIDR-220ENST00000522900 SMARCA4P51532 1647 aa35.86■■■■□ 3.33
SPIDR-220ENST00000522900 ATAD2BQ9ULI0 1458 aa35.85■■■■□ 3.33
SPIDR-220ENST00000522900 BAZ1AQ9NRL2 1556 aaPredicted RBP35.74■■■■□ 3.31
SPIDR-220ENST00000522900 SMARCA2P51531 1590 aa35.69■■■■□ 3.3
SPIDR-220ENST00000522900 MROH2BQ7Z745 1585 aa35.61■■■■□ 3.29
SPIDR-220ENST00000522900 HMGXB3Q12766 1538 aa35.58■■■■□ 3.29
SPIDR-220ENST00000522900 BAZ1BQ9UIG0 1483 aaKnown RBP35.49■■■■□ 3.27
SPIDR-220ENST00000522900 PEG3Q9GZU2 1588 aa35.49■■■■□ 3.27
SPIDR-220ENST00000522900 NESP48681 1621 aa35.24■■■■□ 3.23
SPIDR-220ENST00000522900 ERCC6Q03468 1493 aa35.18■■■■□ 3.22
SPIDR-220ENST00000522900 WIZO95785 1651 aa35.16■■■■□ 3.22
SPIDR-220ENST00000522900 RSF1Q96T23 1441 aaPredicted RBP35.05■■■■□ 3.2
SPIDR-220ENST00000522900 CUX2O14529 1486 aa34.94■■■■□ 3.18
SPIDR-220ENST00000522900 LAMC3Q9Y6N6 1575 aa34.93■■■■□ 3.18
SPIDR-220ENST00000522900 CADPSQ9ULU8 1353 aa34.85■■■■□ 3.17
SPIDR-220ENST00000522900 PDS5BQ9NTI5 1447 aa34.77■■■■□ 3.16
SPIDR-220ENST00000522900 TOP2AP11388 1531 aaKnown RBP34.71■■■■□ 3.15
SPIDR-220ENST00000522900 KIF21AQ7Z4S6 1674 aa34.67■■■■□ 3.14
SPIDR-220ENST00000522900 THOC2Q8NI27 1593 aaKnown RBP34.67■■■■□ 3.14
SPIDR-220ENST00000522900 DNAJC5Q9H3Z4 198 aa34.55■■■■□ 3.12
SPIDR-220ENST00000522900 CFTRP13569 1480 aa34.52■■■■□ 3.12
SPIDR-220ENST00000522900 MRC2Q9UBG0 1479 aa34.44■■■■□ 3.1
SPIDR-220ENST00000522900 FANCD2Q9BXW9 1451 aa34.42■■■■□ 3.1
SPIDR-220ENST00000522900 CCDC88BA6NC98 1476 aa34.39■■■■□ 3.1
SPIDR-220ENST00000522900 CEP164Q9UPV0 1460 aa34.39■■■■□ 3.1
SPIDR-220ENST00000522900 WDR62O43379 1518 aa34.31■■■■□ 3.08
SPIDR-220ENST00000522900 URB2Q14146 1524 aaKnown RBP34.13■■■■□ 3.05
SPIDR-220ENST00000522900 PRDM2Q13029 1718 aa34.01■■■■□ 3.03
SPIDR-220ENST00000522900 SUPT5HO00267 1087 aaKnown RBP33.9■■■■□ 3.02
SPIDR-220ENST00000522900 TOPBP1Q92547 1522 aa33.81■■■■□ 3
SPIDR-220ENST00000522900 ABCC8Q09428 1581 aa33.72■■■□□ 2.99
SPIDR-220ENST00000522900 IFT140Q96RY7 1462 aa33.69■■■□□ 2.98
SPIDR-220ENST00000522900 DNMBPQ6XZF7 1577 aa33.68■■■□□ 2.98
SPIDR-220ENST00000522900 ZNF608Q9ULD9 1512 aaPredicted RBP33.66■■■□□ 2.98
SPIDR-220ENST00000522900 OSCARQ8IYS5 282 aa33.53■■■□□ 2.96
SPIDR-220ENST00000522900 POLA1P09884 1462 aaPredicted RBP33.5■■■□□ 2.95
SPIDR-220ENST00000522900 TARBP1Q13395 1621 aaKnown RBP33.46■■■□□ 2.95
SPIDR-220ENST00000522900 AQRO60306 1485 aaKnown RBP eCLIP33.44■■■□□ 2.94
SPIDR-220ENST00000522900 RAD54L2Q9Y4B4 1467 aa33.43■■■□□ 2.94
SPIDR-220ENST00000522900 CUX1P39880 1505 aa33.41■■■□□ 2.94
SPIDR-220ENST00000522900 EIF4G3O43432 1585 aaKnown RBP33.39■■■□□ 2.94
SPIDR-220ENST00000522900 SOGA1O94964 1423 aa33.39■■■□□ 2.94
SPIDR-220ENST00000522900 FGD5Q6ZNL6 1462 aa33.36■■■□□ 2.93
SPIDR-220ENST00000522900 TDRD9Q8NDG6 1382 aaKnown RBP33.32■■■□□ 2.92
SPIDR-220ENST00000522900 TRIM41Q8WV44 630 aa33.25■■■□□ 2.91
SPIDR-220ENST00000522900 FBLN2P98095 1184 aa33.15■■■□□ 2.9
SPIDR-220ENST00000522900 SNAPC4Q5SXM2 1469 aa33.05■■■□□ 2.88
SPIDR-220ENST00000522900 WDR97A6NE52 1622 aa33.04■■■□□ 2.88
SPIDR-220ENST00000522900 CHD1O14646 1710 aa33.04■■■□□ 2.88
SPIDR-220ENST00000522900 WRNQ14191 1432 aaPredicted RBP eCLIP33.01■■■□□ 2.87
SPIDR-220ENST00000522900 GRIN2BQ13224 1484 aa33■■■□□ 2.87
SPIDR-220ENST00000522900 ABCA10Q8WWZ4 1543 aa32.98■■■□□ 2.87
SPIDR-220ENST00000522900 GAPVD1Q14C86 1478 aa32.97■■■□□ 2.87
SPIDR-220ENST00000522900 RIMBP3CA6NJZ7 1639 aa32.95■■■□□ 2.87
SPIDR-220ENST00000522900 RIMBP3BA6NNM3 1639 aa32.95■■■□□ 2.87
SPIDR-220ENST00000522900 RIMBP3Q9UFD9 1639 aa32.95■■■□□ 2.87
SPIDR-220ENST00000522900 CHMP7Q8WUX9 453 aaPredicted RBP32.95■■■□□ 2.87
SPIDR-220ENST00000522900 SYNJ1O43426 1573 aa32.95■■■□□ 2.86
SPIDR-220ENST00000522900 TOP2BQ02880 1626 aa32.93■■■□□ 2.86
SPIDR-220ENST00000522900 MAGI1Q96QZ7 1491 aaPredicted RBP32.93■■■□□ 2.86
SPIDR-220ENST00000522900 ARHGEF11O15085 1522 aa32.92■■■□□ 2.86
SPIDR-220ENST00000522900 BIVM-ERCC5R4GMW8 1640 aa32.9■■■□□ 2.86
SPIDR-220ENST00000522900 ABCA5Q8WWZ7 1642 aa32.85■■■□□ 2.85
SPIDR-220ENST00000522900 SYNJ2O15056 1496 aa32.84■■■□□ 2.85
SPIDR-220ENST00000522900 PBRM1Q86U86 1689 aa32.82■■■□□ 2.84
SPIDR-220ENST00000522900 CYB5RLQ6IPT4 315 aa32.75■■■□□ 2.83
SPIDR-220ENST00000522900 CLASP1Q7Z460 1538 aa32.72■■■□□ 2.83
SPIDR-220ENST00000522900 ARAP1Q96P48 1450 aa32.65■■■□□ 2.82
SPIDR-220ENST00000522900 GRIN2AQ12879 1464 aa32.58■■■□□ 2.81
SPIDR-220ENST00000522900 ADAMTS12P58397 1594 aa32.58■■■□□ 2.81
SPIDR-220ENST00000522900 FHAD1B1AJZ9 1412 aa32.56■■■□□ 2.8
SPIDR-220ENST00000522900 ERICH3Q5RHP9 1530 aa32.54■■■□□ 2.8
SPIDR-220ENST00000522900 NUP160Q12769 1436 aa32.47■■■□□ 2.79
SPIDR-220ENST00000522900 CEP170Q5SW79 1584 aa32.45■■■□□ 2.78
SPIDR-220ENST00000522900 IGF1RP08069 1367 aa32.35■■■□□ 2.77
SPIDR-220ENST00000522900 KIF27Q86VH2 1401 aa32.34■■■□□ 2.77
SPIDR-220ENST00000522900 ERCC6L2Q5T890 1561 aa32.32■■■□□ 2.77
SPIDR-220ENST00000522900 TRHP20396 242 aaPredicted RBP32.23■■■□□ 2.75
SPIDR-220ENST00000522900 JPH4Q96JJ6 628 aa32.21■■■□□ 2.75
SPIDR-220ENST00000522900 SHROOM2Q13796 1616 aa32.21■■■□□ 2.75
SPIDR-220ENST00000522900 PRG4Q92954 1404 aaPredicted RBP32.16■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms