RNA–Protein interactions for RNA: ENST00000522720.1

PABPC1-221, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 4

Gene PABPC1, Length 593 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-221ENST00000522720 NISCHQ9Y2I1 1504 aa40.01■■■■□ 3.99
PABPC1-221ENST00000522720 CCDC180Q9P1Z9 1646 aa35.6■■■■□ 3.29
PABPC1-221ENST00000522720 ABCC9O60706 1549 aa34.96■■■■□ 3.19
PABPC1-221ENST00000522720 RB1CC1Q8TDY2 1594 aa33.58■■■□□ 2.97
PABPC1-221ENST00000522720 NACADO15069 1562 aa33.53■■■□□ 2.96
PABPC1-221ENST00000522720 DCAF8L2P0C7V8 631 aa33.5■■■□□ 2.95
PABPC1-221ENST00000522720 MYO15BQ96JP2 1530 aa33.29■■■□□ 2.92
PABPC1-221ENST00000522720 ZCCHC6Q5VYS8 1495 aaKnown RBP33.28■■■□□ 2.92
PABPC1-221ENST00000522720 DCAF1Q9Y4B6 1507 aa33.11■■■□□ 2.89
PABPC1-221ENST00000522720 UNC13AQ9UPW8 1703 aa32.82■■■□□ 2.85
PABPC1-221ENST00000522720 PABPN1Q86U42 306 aaKnown RBP eCLIP32.68■■■□□ 2.82
PABPC1-221ENST00000522720 BICRAQ9NZM4 1560 aa32.58■■■□□ 2.81
PABPC1-221ENST00000522720 SCRIBQ14160 1630 aa32.46■■■□□ 2.79
PABPC1-221ENST00000522720 DNAJC5BQ9UF47 199 aa32.26■■■□□ 2.75
PABPC1-221ENST00000522720 SHROOM4Q9ULL8 1493 aa32.22■■■□□ 2.75
PABPC1-221ENST00000522720 EIF4G1Q04637 1599 aaKnown RBP31.72■■■□□ 2.67
PABPC1-221ENST00000522720 CC2D2AQ9P2K1 1620 aa31.63■■■□□ 2.65
PABPC1-221ENST00000522720 CECR2Q9BXF3 1484 aa31.44■■■□□ 2.62
PABPC1-221ENST00000522720 SMARCA4P51532 1647 aa31.06■■■□□ 2.56
PABPC1-221ENST00000522720 BAZ1AQ9NRL2 1556 aaPredicted RBP31■■■□□ 2.55
PABPC1-221ENST00000522720 NCAPD3P42695 1498 aa30.96■■■□□ 2.55
PABPC1-221ENST00000522720 ATAD2BQ9ULI0 1458 aa30.94■■■□□ 2.54
PABPC1-221ENST00000522720 SMARCA2P51531 1590 aa30.88■■■□□ 2.53
PABPC1-221ENST00000522720 MROH2BQ7Z745 1585 aa30.83■■■□□ 2.53
PABPC1-221ENST00000522720 PEG3Q9GZU2 1588 aa30.76■■■□□ 2.52
PABPC1-221ENST00000522720 HMGXB3Q12766 1538 aa30.75■■■□□ 2.51
PABPC1-221ENST00000522720 BAZ1BQ9UIG0 1483 aaKnown RBP30.66■■■□□ 2.5
PABPC1-221ENST00000522720 WIZO95785 1651 aa30.49■■■□□ 2.47
PABPC1-221ENST00000522720 RSF1Q96T23 1441 aaPredicted RBP30.44■■■□□ 2.46
PABPC1-221ENST00000522720 NESP48681 1621 aa30.23■■■□□ 2.43
PABPC1-221ENST00000522720 ERCC6Q03468 1493 aa30.14■■■□□ 2.42
PABPC1-221ENST00000522720 TOP2AP11388 1531 aaKnown RBP30.14■■■□□ 2.42
PABPC1-221ENST00000522720 LAMC3Q9Y6N6 1575 aa30.13■■■□□ 2.41
PABPC1-221ENST00000522720 CADPSQ9ULU8 1353 aa30.04■■■□□ 2.4
PABPC1-221ENST00000522720 PDS5BQ9NTI5 1447 aa29.96■■■□□ 2.39
PABPC1-221ENST00000522720 CUX2O14529 1486 aa29.88■■■□□ 2.37
PABPC1-221ENST00000522720 KIF21AQ7Z4S6 1674 aa29.85■■■□□ 2.37
PABPC1-221ENST00000522720 CFTRP13569 1480 aa29.83■■■□□ 2.37
PABPC1-221ENST00000522720 CCDC88BA6NC98 1476 aa29.81■■■□□ 2.36
PABPC1-221ENST00000522720 THOC2Q8NI27 1593 aaKnown RBP29.77■■■□□ 2.36
PABPC1-221ENST00000522720 FANCD2Q9BXW9 1451 aa29.68■■■□□ 2.34
PABPC1-221ENST00000522720 CEP164Q9UPV0 1460 aa29.64■■■□□ 2.34
PABPC1-221ENST00000522720 MRC2Q9UBG0 1479 aa29.63■■■□□ 2.33
PABPC1-221ENST00000522720 SUPT5HO00267 1087 aaKnown RBP29.58■■■□□ 2.33
PABPC1-221ENST00000522720 PRDM2Q13029 1718 aa29.57■■■□□ 2.32
PABPC1-221ENST00000522720 WDR62O43379 1518 aa29.54■■■□□ 2.32
PABPC1-221ENST00000522720 URB2Q14146 1524 aaKnown RBP29.39■■■□□ 2.3
PABPC1-221ENST00000522720 ABCC8Q09428 1581 aa29.2■■■□□ 2.26
PABPC1-221ENST00000522720 TOPBP1Q92547 1522 aa29.2■■■□□ 2.26
PABPC1-221ENST00000522720 DNAJC5Q9H3Z4 198 aa29.17■■■□□ 2.26
PABPC1-221ENST00000522720 DNMBPQ6XZF7 1577 aa29.13■■■□□ 2.25
PABPC1-221ENST00000522720 IFT140Q96RY7 1462 aa29.04■■■□□ 2.24
PABPC1-221ENST00000522720 POLA1P09884 1462 aaPredicted RBP28.93■■■□□ 2.22
PABPC1-221ENST00000522720 CUX1P39880 1505 aa28.92■■■□□ 2.22
PABPC1-221ENST00000522720 ZNF608Q9ULD9 1512 aaPredicted RBP28.92■■■□□ 2.22
PABPC1-221ENST00000522720 TARBP1Q13395 1621 aaKnown RBP28.88■■■□□ 2.21
PABPC1-221ENST00000522720 SOGA1O94964 1423 aa28.84■■■□□ 2.21
PABPC1-221ENST00000522720 FGD5Q6ZNL6 1462 aa28.84■■■□□ 2.21
PABPC1-221ENST00000522720 RAD54L2Q9Y4B4 1467 aa28.81■■■□□ 2.2
PABPC1-221ENST00000522720 EIF4G3O43432 1585 aaKnown RBP28.77■■■□□ 2.2
PABPC1-221ENST00000522720 AQRO60306 1485 aaKnown RBP eCLIP28.75■■■□□ 2.199e-6■■□□□ 13.1
PABPC1-221ENST00000522720 WRNQ14191 1432 aaPredicted RBP eCLIP28.69■■■□□ 2.18
PABPC1-221ENST00000522720 TDRD9Q8NDG6 1382 aaKnown RBP28.69■■■□□ 2.18
PABPC1-221ENST00000522720 OSCARQ8IYS5 282 aa28.67■■■□□ 2.18
PABPC1-221ENST00000522720 WDR97A6NE52 1622 aa28.64■■■□□ 2.18
PABPC1-221ENST00000522720 TOP2BQ02880 1626 aa28.64■■■□□ 2.18
PABPC1-221ENST00000522720 BIVM-ERCC5R4GMW8 1640 aa28.63■■■□□ 2.17
PABPC1-221ENST00000522720 SYNJ1O43426 1573 aa28.61■■■□□ 2.17
PABPC1-221ENST00000522720 ABCA10Q8WWZ4 1543 aa28.57■■■□□ 2.16
PABPC1-221ENST00000522720 GRIN2BQ13224 1484 aa28.5■■■□□ 2.15
PABPC1-221ENST00000522720 GAPVD1Q14C86 1478 aa28.49■■■□□ 2.15
PABPC1-221ENST00000522720 SNAPC4Q5SXM2 1469 aa28.46■■■□□ 2.15
PABPC1-221ENST00000522720 CHD1O14646 1710 aa28.45■■■□□ 2.14
PABPC1-221ENST00000522720 ABCA5Q8WWZ7 1642 aa28.44■■■□□ 2.14
PABPC1-221ENST00000522720 FBLN2P98095 1184 aa28.44■■■□□ 2.14
PABPC1-221ENST00000522720 MAGI1Q96QZ7 1491 aaPredicted RBP28.43■■■□□ 2.14
PABPC1-221ENST00000522720 PBRM1Q86U86 1689 aa28.4■■■□□ 2.14
PABPC1-221ENST00000522720 CHMP7Q8WUX9 453 aaPredicted RBP28.35■■■□□ 2.13
PABPC1-221ENST00000522720 SYNJ2O15056 1496 aa28.33■■■□□ 2.13
PABPC1-221ENST00000522720 ERICH3Q5RHP9 1530 aa28.22■■■□□ 2.11
PABPC1-221ENST00000522720 ADAMTS12P58397 1594 aa28.17■■■□□ 2.1
PABPC1-221ENST00000522720 RIMBP3CA6NJZ7 1639 aa28.17■■■□□ 2.1
PABPC1-221ENST00000522720 RIMBP3BA6NNM3 1639 aa28.17■■■□□ 2.1
PABPC1-221ENST00000522720 RIMBP3Q9UFD9 1639 aa28.17■■■□□ 2.1
PABPC1-221ENST00000522720 ARHGEF11O15085 1522 aa28.16■■■□□ 2.1
PABPC1-221ENST00000522720 FHAD1B1AJZ9 1412 aa28.16■■■□□ 2.1
PABPC1-221ENST00000522720 CLASP1Q7Z460 1538 aa28.14■■■□□ 2.1
PABPC1-221ENST00000522720 GRIN2AQ12879 1464 aa28.13■■■□□ 2.09
PABPC1-221ENST00000522720 TRIM41Q8WV44 630 aa28.12■■■□□ 2.09
PABPC1-221ENST00000522720 KIF27Q86VH2 1401 aa28.11■■■□□ 2.09
PABPC1-221ENST00000522720 IGF1RP08069 1367 aa28.04■■■□□ 2.08
PABPC1-221ENST00000522720 NUP160Q12769 1436 aa28.01■■■□□ 2.08
PABPC1-221ENST00000522720 CEP170Q5SW79 1584 aa27.98■■■□□ 2.07
PABPC1-221ENST00000522720 CYB5RLQ6IPT4 315 aa27.95■■■□□ 2.06
PABPC1-221ENST00000522720 CUL7Q14999 1698 aa27.92■■■□□ 2.06
PABPC1-221ENST00000522720 ARAP1Q96P48 1450 aa27.92■■■□□ 2.06
PABPC1-221ENST00000522720 CARMIL1Q5VZK9 1371 aa27.86■■■□□ 2.05
PABPC1-221ENST00000522720 RUSC2Q8N2Y8 1516 aa27.82■■■□□ 2.04
PABPC1-221ENST00000522720 SHROOM2Q13796 1616 aa27.81■■■□□ 2.04
PABPC1-221ENST00000522720 JPH4Q96JJ6 628 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms