RNA–Protein interactions for RNA: ENST00000522222.5

SPIDR-218, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 4

Gene SPIDR, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-218ENST00000522222 NISCHQ9Y2I1 1504 aa16.57■□□□□ 0.24
SPIDR-218ENST00000522222 AEBP2Q6ZN18 517 aaPredicted RBP15.55■□□□□ 0.08
SPIDR-218ENST00000522222 CCDC180Q9P1Z9 1646 aa14.78□□□□□ -0.04
SPIDR-218ENST00000522222 CHIC1Q5VXU3 224 aa14.53□□□□□ -0.08
SPIDR-218ENST00000522222 ABCC9O60706 1549 aa14.46□□□□□ -0.09
SPIDR-218ENST00000522222 RB1CC1Q8TDY2 1594 aa13.9□□□□□ -0.18
SPIDR-218ENST00000522222 NACADO15069 1562 aa13.88□□□□□ -0.19
SPIDR-218ENST00000522222 ZCCHC6Q5VYS8 1495 aaKnown RBP13.84□□□□□ -0.19
SPIDR-218ENST00000522222 MYO15BQ96JP2 1530 aa13.78□□□□□ -0.2
SPIDR-218ENST00000522222 DCAF8L2P0C7V8 631 aa13.76□□□□□ -0.21
SPIDR-218ENST00000522222 DCAF1Q9Y4B6 1507 aa13.71□□□□□ -0.21
SPIDR-218ENST00000522222 POTEDQ86YR6 584 aa13.7□□□□□ -0.22
SPIDR-218ENST00000522222 UNC13AQ9UPW8 1703 aa13.6□□□□□ -0.23
SPIDR-218ENST00000522222 BICRAQ9NZM4 1560 aa13.5□□□□□ -0.25
SPIDR-218ENST00000522222 SCRIBQ14160 1630 aa13.5□□□□□ -0.25
SPIDR-218ENST00000522222 PABPN1Q86U42 306 aaKnown RBP eCLIP13.47□□□□□ -0.25
SPIDR-218ENST00000522222 SENP3Q9H4L4 574 aaPredicted RBP13.44□□□□□ -0.26
SPIDR-218ENST00000522222 SHROOM4Q9ULL8 1493 aa13.36□□□□□ -0.27
SPIDR-218ENST00000522222 DNAJC5BQ9UF47 199 aa13.25□□□□□ -0.29
SPIDR-218ENST00000522222 EIF4G1Q04637 1599 aaKnown RBP13.14□□□□□ -0.31
SPIDR-218ENST00000522222 PHF23Q9BUL5 403 aaPredicted RBP13.12□□□□□ -0.31
SPIDR-218ENST00000522222 CC2D2AQ9P2K1 1620 aa13.09□□□□□ -0.31
SPIDR-218ENST00000522222 CECR2Q9BXF3 1484 aa12.99□□□□□ -0.33
SPIDR-218ENST00000522222 SMARCA4P51532 1647 aa12.89□□□□□ -0.35
SPIDR-218ENST00000522222 BAZ1AQ9NRL2 1556 aaPredicted RBP12.86□□□□□ -0.35
SPIDR-218ENST00000522222 ATAD2BQ9ULI0 1458 aa12.8□□□□□ -0.36
SPIDR-218ENST00000522222 SMARCA2P51531 1590 aa12.8□□□□□ -0.36
SPIDR-218ENST00000522222 NCAPD3P42695 1498 aa12.78□□□□□ -0.36
SPIDR-218ENST00000522222 MROH2BQ7Z745 1585 aa12.78□□□□□ -0.36
SPIDR-218ENST00000522222 HMGXB3Q12766 1538 aa12.77□□□□□ -0.37
SPIDR-218ENST00000522222 PEG3Q9GZU2 1588 aa12.76□□□□□ -0.37
SPIDR-218ENST00000522222 BAZ1BQ9UIG0 1483 aaKnown RBP12.71□□□□□ -0.38
SPIDR-218ENST00000522222 FOXD1Q16676 465 aa12.65□□□□□ -0.38
SPIDR-218ENST00000522222 WIZO95785 1651 aa12.64□□□□□ -0.39
SPIDR-218ENST00000522222 RSF1Q96T23 1441 aaPredicted RBP12.61□□□□□ -0.39
SPIDR-218ENST00000522222 TOP2AP11388 1531 aaKnown RBP12.52□□□□□ -0.4
SPIDR-218ENST00000522222 NESP48681 1621 aa12.51□□□□□ -0.41
SPIDR-218ENST00000522222 LAMC3Q9Y6N6 1575 aa12.47□□□□□ -0.41
SPIDR-218ENST00000522222 ERCC6Q03468 1493 aa12.46□□□□□ -0.41
SPIDR-218ENST00000522222 CADPSQ9ULU8 1353 aa12.4□□□□□ -0.42
SPIDR-218ENST00000522222 KIF21AQ7Z4S6 1674 aa12.38□□□□□ -0.43
SPIDR-218ENST00000522222 THOC2Q8NI27 1593 aaKnown RBP12.37□□□□□ -0.43
SPIDR-218ENST00000522222 PDS5BQ9NTI5 1447 aa12.36□□□□□ -0.43
SPIDR-218ENST00000522222 CUX2O14529 1486 aa12.35□□□□□ -0.43
SPIDR-218ENST00000522222 CFTRP13569 1480 aa12.34□□□□□ -0.43
SPIDR-218ENST00000522222 CCDC88BA6NC98 1476 aa12.34□□□□□ -0.43
SPIDR-218ENST00000522222 FANCD2Q9BXW9 1451 aa12.29□□□□□ -0.44
SPIDR-218ENST00000522222 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
SPIDR-218ENST00000522222 PRDM2Q13029 1718 aa12.28□□□□□ -0.44
SPIDR-218ENST00000522222 MRC2Q9UBG0 1479 aa12.28□□□□□ -0.44
SPIDR-218ENST00000522222 WDR62O43379 1518 aa12.25□□□□□ -0.45
SPIDR-218ENST00000522222 MSH5O43196 834 aa12.24□□□□□ -0.45
SPIDR-218ENST00000522222 SUPT5HO00267 1087 aaKnown RBP12.21□□□□□ -0.45
SPIDR-218ENST00000522222 URB2Q14146 1524 aaKnown RBP12.19□□□□□ -0.46
SPIDR-218ENST00000522222 TOPBP1Q92547 1522 aa12.1□□□□□ -0.47
SPIDR-218ENST00000522222 DNMBPQ6XZF7 1577 aa12.09□□□□□ -0.47
SPIDR-218ENST00000522222 ABCC8Q09428 1581 aa12.05□□□□□ -0.48
SPIDR-218ENST00000522222 IFT140Q96RY7 1462 aa12.02□□□□□ -0.49
SPIDR-218ENST00000522222 CUX1P39880 1505 aa12.01□□□□□ -0.49
SPIDR-218ENST00000522222 POLA1P09884 1462 aaPredicted RBP12□□□□□ -0.49
SPIDR-218ENST00000522222 ZNF608Q9ULD9 1512 aaPredicted RBP11.98□□□□□ -0.49
SPIDR-218ENST00000522222 TARBP1Q13395 1621 aaKnown RBP11.97□□□□□ -0.49
SPIDR-218ENST00000522222 FGD5Q6ZNL6 1462 aa11.96□□□□□ -0.49
SPIDR-218ENST00000522222 EIF4G3O43432 1585 aaKnown RBP11.96□□□□□ -0.5
SPIDR-218ENST00000522222 DNAJC5Q9H3Z4 198 aa11.94□□□□□ -0.5
SPIDR-218ENST00000522222 RAD54L2Q9Y4B4 1467 aa11.93□□□□□ -0.5
SPIDR-218ENST00000522222 WDR97A6NE52 1622 aa11.9□□□□□ -0.5
SPIDR-218ENST00000522222 SYNJ1O43426 1573 aa11.9□□□□□ -0.5
SPIDR-218ENST00000522222 SOGA1O94964 1423 aa11.9□□□□□ -0.5
SPIDR-218ENST00000522222 BIVM-ERCC5R4GMW8 1640 aa11.89□□□□□ -0.51
SPIDR-218ENST00000522222 WRNQ14191 1432 aaPredicted RBP eCLIP11.89□□□□□ -0.51
SPIDR-218ENST00000522222 TOP2BQ02880 1626 aa11.89□□□□□ -0.51
SPIDR-218ENST00000522222 AQRO60306 1485 aaKnown RBP eCLIP11.87□□□□□ -0.51
SPIDR-218ENST00000522222 TDRD9Q8NDG6 1382 aaKnown RBP11.84□□□□□ -0.51
SPIDR-218ENST00000522222 ABCA10Q8WWZ4 1543 aa11.84□□□□□ -0.51
SPIDR-218ENST00000522222 ABCA5Q8WWZ7 1642 aa11.82□□□□□ -0.52
SPIDR-218ENST00000522222 SNAPC4Q5SXM2 1469 aa11.81□□□□□ -0.52
SPIDR-218ENST00000522222 CHD1O14646 1710 aa11.8□□□□□ -0.52
SPIDR-218ENST00000522222 PBRM1Q86U86 1689 aa11.8□□□□□ -0.52
SPIDR-218ENST00000522222 GRIN2BQ13224 1484 aa11.79□□□□□ -0.52
SPIDR-218ENST00000522222 GAPVD1Q14C86 1478 aa11.78□□□□□ -0.52
SPIDR-218ENST00000522222 MAGI1Q96QZ7 1491 aaPredicted RBP11.77□□□□□ -0.52
SPIDR-218ENST00000522222 OSCARQ8IYS5 282 aa11.75□□□□□ -0.53
SPIDR-218ENST00000522222 SYNJ2O15056 1496 aa11.73□□□□□ -0.53
SPIDR-218ENST00000522222 ADAMTS12P58397 1594 aa11.73□□□□□ -0.53
SPIDR-218ENST00000522222 ERICH3Q5RHP9 1530 aa11.7□□□□□ -0.54
SPIDR-218ENST00000522222 FBLN2P98095 1184 aa11.69□□□□□ -0.54
SPIDR-218ENST00000522222 CLASP1Q7Z460 1538 aa11.68□□□□□ -0.54
SPIDR-218ENST00000522222 CHMP7Q8WUX9 453 aaPredicted RBP11.66□□□□□ -0.54
SPIDR-218ENST00000522222 RIMBP3CA6NJZ7 1639 aa11.66□□□□□ -0.54
SPIDR-218ENST00000522222 RIMBP3BA6NNM3 1639 aa11.66□□□□□ -0.54
SPIDR-218ENST00000522222 RIMBP3Q9UFD9 1639 aa11.66□□□□□ -0.54
SPIDR-218ENST00000522222 ARHGEF11O15085 1522 aa11.65□□□□□ -0.54
SPIDR-218ENST00000522222 GRIN2AQ12879 1464 aa11.65□□□□□ -0.54
SPIDR-218ENST00000522222 FHAD1B1AJZ9 1412 aa11.65□□□□□ -0.54
SPIDR-218ENST00000522222 KIF27Q86VH2 1401 aa11.63□□□□□ -0.55
SPIDR-218ENST00000522222 CEP170Q5SW79 1584 aa11.62□□□□□ -0.55
SPIDR-218ENST00000522222 NUP160Q12769 1436 aa11.6□□□□□ -0.55
SPIDR-218ENST00000522222 CUL7Q14999 1698 aa11.59□□□□□ -0.55
SPIDR-218ENST00000522222 PIAS4Q8N2W9 510 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms