RNA–Protein interactions for RNA: ENST00000521865.5

PABPC1-218, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2

Gene PABPC1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-218ENST00000521865 NISCHQ9Y2I1 1504 aa51.97■■■■■ 5.91
PABPC1-218ENST00000521865 ABCC9O60706 1549 aa46.7■■■■■ 5.07
PABPC1-218ENST00000521865 CCDC180Q9P1Z9 1646 aa46.54■■■■■ 5.04
PABPC1-218ENST00000521865 RB1CC1Q8TDY2 1594 aa44.39■■■■■ 4.7
PABPC1-218ENST00000521865 DCAF8L2P0C7V8 631 aa44.11■■■■■ 4.65
PABPC1-218ENST00000521865 NACADO15069 1562 aa44.06■■■■■ 4.64
PABPC1-218ENST00000521865 DNAJC5BQ9UF47 199 aa43.75■■■■■ 4.59
PABPC1-218ENST00000521865 PABPN1Q86U42 306 aaKnown RBP eCLIP43.55■■■■■ 4.56
PABPC1-218ENST00000521865 MYO15BQ96JP2 1530 aa43.42■■■■■ 4.54
PABPC1-218ENST00000521865 UNC13AQ9UPW8 1703 aa43.21■■■■■ 4.51
PABPC1-218ENST00000521865 ZCCHC6Q5VYS8 1495 aaKnown RBP43.06■■■■■ 4.48
PABPC1-218ENST00000521865 BICRAQ9NZM4 1560 aa43.02■■■■■ 4.48
PABPC1-218ENST00000521865 DCAF1Q9Y4B6 1507 aa42.88■■■■■ 4.46
PABPC1-218ENST00000521865 SCRIBQ14160 1630 aa42.53■■■■■ 4.4
PABPC1-218ENST00000521865 SHROOM4Q9ULL8 1493 aa42.48■■■■■ 4.39
PABPC1-218ENST00000521865 CC2D2AQ9P2K1 1620 aa42.09■■■■■ 4.33
PABPC1-218ENST00000521865 CECR2Q9BXF3 1484 aa42.05■■■■■ 4.32
PABPC1-218ENST00000521865 EIF4G1Q04637 1599 aaKnown RBP42.03■■■■■ 4.32
PABPC1-218ENST00000521865 NCAPD3P42695 1498 aa40.7■■■■■ 4.11
PABPC1-218ENST00000521865 ATAD2BQ9ULI0 1458 aa40.59■■■■■ 4.09
PABPC1-218ENST00000521865 SMARCA4P51532 1647 aa40.51■■■■■ 4.08
PABPC1-218ENST00000521865 SMARCA2P51531 1590 aa40.48■■■■■ 4.07
PABPC1-218ENST00000521865 ERCC6Q03468 1493 aa40.37■■■■■ 4.05
PABPC1-218ENST00000521865 HMGXB3Q12766 1538 aa40.37■■■■■ 4.05
PABPC1-218ENST00000521865 BAZ1AQ9NRL2 1556 aaPredicted RBP40.35■■■■■ 4.05
PABPC1-218ENST00000521865 BAZ1BQ9UIG0 1483 aaKnown RBP40.25■■■■■ 4.03
PABPC1-218ENST00000521865 DNAJC5Q9H3Z4 198 aa40.19■■■■■ 4.02
PABPC1-218ENST00000521865 CUX2O14529 1486 aa40.19■■■■■ 4.02
PABPC1-218ENST00000521865 NESP48681 1621 aa40.08■■■■■ 4.01
PABPC1-218ENST00000521865 PEG3Q9GZU2 1588 aa40.07■■■■■ 4.01
PABPC1-218ENST00000521865 MROH2BQ7Z745 1585 aa40.06■■■■■ 4
PABPC1-218ENST00000521865 LAMC3Q9Y6N6 1575 aa39.76■■■■□ 3.96
PABPC1-218ENST00000521865 PDS5BQ9NTI5 1447 aa39.63■■■■□ 3.93
PABPC1-218ENST00000521865 THOC2Q8NI27 1593 aaKnown RBP39.59■■■■□ 3.93
PABPC1-218ENST00000521865 WIZO95785 1651 aa39.54■■■■□ 3.92
PABPC1-218ENST00000521865 CADPSQ9ULU8 1353 aa39.51■■■■□ 3.92
PABPC1-218ENST00000521865 KIF21AQ7Z4S6 1674 aa39.48■■■■□ 3.91
PABPC1-218ENST00000521865 RSF1Q96T23 1441 aaPredicted RBP39.26■■■■□ 3.88
PABPC1-218ENST00000521865 MRC2Q9UBG0 1479 aa39.25■■■■□ 3.87
PABPC1-218ENST00000521865 CEP164Q9UPV0 1460 aa39.11■■■■□ 3.85
PABPC1-218ENST00000521865 WDR62O43379 1518 aa39.09■■■■□ 3.85
PABPC1-218ENST00000521865 FANCD2Q9BXW9 1451 aa39.07■■■■□ 3.85
PABPC1-218ENST00000521865 TOP2AP11388 1531 aaKnown RBP39.07■■■■□ 3.84
PABPC1-218ENST00000521865 CFTRP13569 1480 aa39.03■■■■□ 3.84
PABPC1-218ENST00000521865 URB2Q14146 1524 aaKnown RBP38.7■■■■□ 3.79
PABPC1-218ENST00000521865 CCDC88BA6NC98 1476 aa38.66■■■■□ 3.78
PABPC1-218ENST00000521865 TRIM41Q8WV44 630 aa38.57■■■■□ 3.76
PABPC1-218ENST00000521865 PRDM2Q13029 1718 aa38.47■■■■□ 3.75
PABPC1-218ENST00000521865 OSCARQ8IYS5 282 aa38.46■■■■□ 3.75
PABPC1-218ENST00000521865 IFT140Q96RY7 1462 aa38.32■■■■□ 3.72
PABPC1-218ENST00000521865 TOPBP1Q92547 1522 aa38.29■■■■□ 3.72
PABPC1-218ENST00000521865 ZNF608Q9ULD9 1512 aaPredicted RBP38.24■■■■□ 3.71
PABPC1-218ENST00000521865 ABCC8Q09428 1581 aa38.23■■■■□ 3.71
PABPC1-218ENST00000521865 DNMBPQ6XZF7 1577 aa38.14■■■■□ 3.7
PABPC1-218ENST00000521865 EIF4G3O43432 1585 aaKnown RBP37.99■■■■□ 3.67
PABPC1-218ENST00000521865 AQRO60306 1485 aaKnown RBP eCLIP37.94■■■■□ 3.669e-6■■□□□ 13.1
PABPC1-218ENST00000521865 POLA1P09884 1462 aaPredicted RBP37.91■■■■□ 3.66
PABPC1-218ENST00000521865 TARBP1Q13395 1621 aaKnown RBP37.89■■■■□ 3.66
PABPC1-218ENST00000521865 RIMBP3CA6NJZ7 1639 aa37.83■■■■□ 3.65
PABPC1-218ENST00000521865 RIMBP3BA6NNM3 1639 aa37.83■■■■□ 3.65
PABPC1-218ENST00000521865 RIMBP3Q9UFD9 1639 aa37.83■■■■□ 3.65
PABPC1-218ENST00000521865 FBLN2P98095 1184 aa37.82■■■■□ 3.64
PABPC1-218ENST00000521865 RAD54L2Q9Y4B4 1467 aa37.81■■■■□ 3.64
PABPC1-218ENST00000521865 SOGA1O94964 1423 aa37.79■■■■□ 3.64
PABPC1-218ENST00000521865 ARHGEF11O15085 1522 aa37.75■■■■□ 3.63
PABPC1-218ENST00000521865 TDRD9Q8NDG6 1382 aaKnown RBP37.74■■■■□ 3.63
PABPC1-218ENST00000521865 SUPT5HO00267 1087 aaKnown RBP37.71■■■■□ 3.63
PABPC1-218ENST00000521865 FGD5Q6ZNL6 1462 aa37.7■■■■□ 3.63
PABPC1-218ENST00000521865 CHD1O14646 1710 aa37.65■■■■□ 3.62
PABPC1-218ENST00000521865 CUX1P39880 1505 aa37.63■■■■□ 3.61
PABPC1-218ENST00000521865 CYB5RLQ6IPT4 315 aa37.59■■■■□ 3.61
PABPC1-218ENST00000521865 SNAPC4Q5SXM2 1469 aa37.54■■■■□ 3.6
PABPC1-218ENST00000521865 WDR97A6NE52 1622 aa37.5■■■■□ 3.59
PABPC1-218ENST00000521865 CHMP7Q8WUX9 453 aaPredicted RBP37.5■■■■□ 3.59
PABPC1-218ENST00000521865 GRIN2BQ13224 1484 aa37.44■■■■□ 3.58
PABPC1-218ENST00000521865 MAGI1Q96QZ7 1491 aaPredicted RBP37.41■■■■□ 3.58
PABPC1-218ENST00000521865 ARAP1Q96P48 1450 aa37.38■■■■□ 3.57
PABPC1-218ENST00000521865 GAPVD1Q14C86 1478 aa37.32■■■■□ 3.56
PABPC1-218ENST00000521865 SYNJ2O15056 1496 aa37.31■■■■□ 3.56
PABPC1-218ENST00000521865 SYNJ1O43426 1573 aa37.29■■■■□ 3.56
PABPC1-218ENST00000521865 CLASP1Q7Z460 1538 aa37.26■■■■□ 3.55
PABPC1-218ENST00000521865 ABCA10Q8WWZ4 1543 aa37.24■■■■□ 3.55
PABPC1-218ENST00000521865 TRHP20396 242 aaPredicted RBP37.23■■■■□ 3.55
PABPC1-218ENST00000521865 PBRM1Q86U86 1689 aa37.18■■■■□ 3.54
PABPC1-218ENST00000521865 WRNQ14191 1432 aaPredicted RBP eCLIP37.16■■■■□ 3.54
PABPC1-218ENST00000521865 ABCA5Q8WWZ7 1642 aa37.13■■■■□ 3.53
PABPC1-218ENST00000521865 TOP2BQ02880 1626 aa37.01■■■■□ 3.52
PABPC1-218ENST00000521865 BIVM-ERCC5R4GMW8 1640 aa36.97■■■■□ 3.51
PABPC1-218ENST00000521865 GRIN2AQ12879 1464 aa36.94■■■■□ 3.5
PABPC1-218ENST00000521865 ADAMTS12P58397 1594 aa36.88■■■■□ 3.49
PABPC1-218ENST00000521865 FHAD1B1AJZ9 1412 aa36.85■■■■□ 3.49
PABPC1-218ENST00000521865 NUP160Q12769 1436 aa36.79■■■■□ 3.48
PABPC1-218ENST00000521865 ERICH3Q5RHP9 1530 aa36.77■■■■□ 3.48
PABPC1-218ENST00000521865 CEP170Q5SW79 1584 aa36.77■■■■□ 3.48
PABPC1-218ENST00000521865 ERCC6L2Q5T890 1561 aa36.7■■■■□ 3.47
PABPC1-218ENST00000521865 SHROOM2Q13796 1616 aa36.55■■■■□ 3.44
PABPC1-218ENST00000521865 PRG4Q92954 1404 aaPredicted RBP36.51■■■■□ 3.44
PABPC1-218ENST00000521865 JPH4Q96JJ6 628 aa36.51■■■■□ 3.44
PABPC1-218ENST00000521865 KIF27Q86VH2 1401 aa36.4■■■■□ 3.42
PABPC1-218ENST00000521865 RUSC2Q8N2Y8 1516 aa36.35■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms