RNA–Protein interactions for RNA: ENST00000521516.5

HMBOX1-208, Transcript of homeobox containing 1, humanhuman

TSL 2

Gene HMBOX1, Length 2,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-208ENST00000521516 NISCHQ9Y2I1 1504 aa20.25■□□□□ 0.83
HMBOX1-208ENST00000521516 ABCC9O60706 1549 aa19.29■□□□□ 0.68
HMBOX1-208ENST00000521516 DNAJC5BQ9UF47 199 aa18.89■□□□□ 0.61
HMBOX1-208ENST00000521516 CCDC180Q9P1Z9 1646 aa18.53■□□□□ 0.56
HMBOX1-208ENST00000521516 RB1CC1Q8TDY2 1594 aa18.03■□□□□ 0.48
HMBOX1-208ENST00000521516 DNAJC5Q9H3Z4 198 aa17.97■□□□□ 0.47
HMBOX1-208ENST00000521516 PABPN1Q86U42 306 aaKnown RBP eCLIP17.82■□□□□ 0.44
HMBOX1-208ENST00000521516 NACADO15069 1562 aa17.73■□□□□ 0.43
HMBOX1-208ENST00000521516 UNC13AQ9UPW8 1703 aa17.58■□□□□ 0.41
HMBOX1-208ENST00000521516 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
HMBOX1-208ENST00000521516 CECR2Q9BXF3 1484 aa17.5■□□□□ 0.39
HMBOX1-208ENST00000521516 CC2D2AQ9P2K1 1620 aa17.4■□□□□ 0.38
HMBOX1-208ENST00000521516 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
HMBOX1-208ENST00000521516 SHROOM4Q9ULL8 1493 aa17.29■□□□□ 0.36
HMBOX1-208ENST00000521516 MYO15BQ96JP2 1530 aa17.27■□□□□ 0.36
HMBOX1-208ENST00000521516 EIF4G1Q04637 1599 aaKnown RBP17.18■□□□□ 0.34
HMBOX1-208ENST00000521516 CUX2O14529 1486 aa17.03■□□□□ 0.32
HMBOX1-208ENST00000521516 SCRIBQ14160 1630 aa16.77■□□□□ 0.27
HMBOX1-208ENST00000521516 DCAF1Q9Y4B6 1507 aa16.73■□□□□ 0.27
HMBOX1-208ENST00000521516 TRIM41Q8WV44 630 aa16.72■□□□□ 0.27
HMBOX1-208ENST00000521516 ERCC6Q03468 1493 aa16.7■□□□□ 0.26
HMBOX1-208ENST00000521516 ZCCHC6Q5VYS8 1495 aaKnown RBP16.61■□□□□ 0.25
HMBOX1-208ENST00000521516 NCAPD3P42695 1498 aa16.41■□□□□ 0.22
HMBOX1-208ENST00000521516 THOC2Q8NI27 1593 aaKnown RBP16.38■□□□□ 0.21
HMBOX1-208ENST00000521516 NESP48681 1621 aa16.34■□□□□ 0.21
HMBOX1-208ENST00000521516 ATAD2BQ9ULI0 1458 aa16.21■□□□□ 0.19
HMBOX1-208ENST00000521516 HMGXB3Q12766 1538 aa16.18■□□□□ 0.18
HMBOX1-208ENST00000521516 SMARCA2P51531 1590 aa16.15■□□□□ 0.18
HMBOX1-208ENST00000521516 LAMC3Q9Y6N6 1575 aa16.12■□□□□ 0.17
HMBOX1-208ENST00000521516 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
HMBOX1-208ENST00000521516 KIF21AQ7Z4S6 1674 aa16.08■□□□□ 0.17
HMBOX1-208ENST00000521516 OSCARQ8IYS5 282 aa16.07■□□□□ 0.16
HMBOX1-208ENST00000521516 PDS5BQ9NTI5 1447 aa16.06■□□□□ 0.16
HMBOX1-208ENST00000521516 WDR62O43379 1518 aa15.98■□□□□ 0.15
HMBOX1-208ENST00000521516 MRC2Q9UBG0 1479 aa15.97■□□□□ 0.15
HMBOX1-208ENST00000521516 BAZ1BQ9UIG0 1483 aaKnown RBP15.96■□□□□ 0.15
HMBOX1-208ENST00000521516 SMARCA4P51532 1647 aa15.96■□□□□ 0.14
HMBOX1-208ENST00000521516 RIMBP3CA6NJZ7 1639 aa15.95■□□□□ 0.14
HMBOX1-208ENST00000521516 RIMBP3BA6NNM3 1639 aa15.95■□□□□ 0.14
HMBOX1-208ENST00000521516 RIMBP3Q9UFD9 1639 aa15.95■□□□□ 0.14
HMBOX1-208ENST00000521516 AEBP2Q6ZN18 517 aaPredicted RBP15.93■□□□□ 0.14
HMBOX1-208ENST00000521516 PEG3Q9GZU2 1588 aa15.86■□□□□ 0.13
HMBOX1-208ENST00000521516 CADPSQ9ULU8 1353 aa15.83■□□□□ 0.13
HMBOX1-208ENST00000521516 ARHGEF11O15085 1522 aa15.83■□□□□ 0.12
HMBOX1-208ENST00000521516 TRHP20396 242 aaPredicted RBP15.78■□□□□ 0.12
HMBOX1-208ENST00000521516 CEP164Q9UPV0 1460 aa15.72■□□□□ 0.11
HMBOX1-208ENST00000521516 CYB5RLQ6IPT4 315 aa15.72■□□□□ 0.11
HMBOX1-208ENST00000521516 FANCD2Q9BXW9 1451 aa15.63■□□□□ 0.09
HMBOX1-208ENST00000521516 ARAP1Q96P48 1450 aa15.63■□□□□ 0.09
HMBOX1-208ENST00000521516 MROH2BQ7Z745 1585 aa15.58■□□□□ 0.08
HMBOX1-208ENST00000521516 URB2Q14146 1524 aaKnown RBP15.58■□□□□ 0.08
HMBOX1-208ENST00000521516 ZNF608Q9ULD9 1512 aaPredicted RBP15.5■□□□□ 0.07
HMBOX1-208ENST00000521516 RSF1Q96T23 1441 aaPredicted RBP15.49■□□□□ 0.07
HMBOX1-208ENST00000521516 CFTRP13569 1480 aa15.49■□□□□ 0.07
HMBOX1-208ENST00000521516 IFT140Q96RY7 1462 aa15.46■□□□□ 0.07
HMBOX1-208ENST00000521516 ILDR1Q86SU0 546 aaPredicted RBP15.45■□□□□ 0.06
HMBOX1-208ENST00000521516 CHD1O14646 1710 aa15.38■□□□□ 0.05
HMBOX1-208ENST00000521516 EIF4G3O43432 1585 aaKnown RBP15.36■□□□□ 0.05
HMBOX1-208ENST00000521516 WIZO95785 1651 aa15.31■□□□□ 0.04
HMBOX1-208ENST00000521516 CLASP1Q7Z460 1538 aa15.25■□□□□ 0.03
HMBOX1-208ENST00000521516 TOPBP1Q92547 1522 aa15.25■□□□□ 0.03
HMBOX1-208ENST00000521516 AQRO60306 1485 aaKnown RBP eCLIP15.25■□□□□ 0.032e-6■■■■□ 20.6
HMBOX1-208ENST00000521516 FBLN2P98095 1184 aa15.24■□□□□ 0.03
HMBOX1-208ENST00000521516 PRDM2Q13029 1718 aa15.2■□□□□ 0.02
HMBOX1-208ENST00000521516 TARBP1Q13395 1621 aaKnown RBP15.19■□□□□ 0.02
HMBOX1-208ENST00000521516 ABCC8Q09428 1581 aa15.18■□□□□ 0.02
HMBOX1-208ENST00000521516 GAPVD1Q14C86 1478 aa15.13■□□□□ 0.01
HMBOX1-208ENST00000521516 SYNJ1O43426 1573 aa15.13■□□□□ 0.01
HMBOX1-208ENST00000521516 DNMBPQ6XZF7 1577 aa15.12■□□□□ 0.01
HMBOX1-208ENST00000521516 TOP2AP11388 1531 aaKnown RBP15.1■□□□□ 0.01
HMBOX1-208ENST00000521516 KDM4FA0A1W2PPD8 638 aa15.08■□□□□ 0
HMBOX1-208ENST00000521516 SNAPC4Q5SXM2 1469 aa15.07■□□□□ 0
HMBOX1-208ENST00000521516 POLA1P09884 1462 aaPredicted RBP15.04■□□□□ -0
HMBOX1-208ENST00000521516 CHMP7Q8WUX9 453 aaPredicted RBP15.04■□□□□ -0
HMBOX1-208ENST00000521516 MAGI1Q96QZ7 1491 aaPredicted RBP15.02■□□□□ -0
HMBOX1-208ENST00000521516 TDRD9Q8NDG6 1382 aaKnown RBP15.01□□□□□ -0.01
HMBOX1-208ENST00000521516 WDR97A6NE52 1622 aa15□□□□□ -0.01
HMBOX1-208ENST00000521516 KIF13AQ9H1H9 1805 aa14.99□□□□□ -0.01
HMBOX1-208ENST00000521516 RAD54L2Q9Y4B4 1467 aa14.98□□□□□ -0.01
HMBOX1-208ENST00000521516 SYNJ2O15056 1496 aa14.98□□□□□ -0.01
HMBOX1-208ENST00000521516 SOGA1O94964 1423 aa14.95□□□□□ -0.02
HMBOX1-208ENST00000521516 CCDC88BA6NC98 1476 aa14.93□□□□□ -0.02
HMBOX1-208ENST00000521516 GRIN2BQ13224 1484 aa14.93□□□□□ -0.02
HMBOX1-208ENST00000521516 ERCC6L2Q5T890 1561 aa14.92□□□□□ -0.02
HMBOX1-208ENST00000521516 ABCC10Q5T3U5 1492 aa14.85□□□□□ -0.03
HMBOX1-208ENST00000521516 CEP170Q5SW79 1584 aa14.82□□□□□ -0.04
HMBOX1-208ENST00000521516 KDM6BO15054 1643 aa14.82□□□□□ -0.04
HMBOX1-208ENST00000521516 FGD5Q6ZNL6 1462 aa14.82□□□□□ -0.04
HMBOX1-208ENST00000521516 FAM69CQ0P6D2 419 aa14.81□□□□□ -0.04
HMBOX1-208ENST00000521516 FBXO41Q8TF61 875 aa14.81□□□□□ -0.04
HMBOX1-208ENST00000521516 HECW2Q9P2P5 1572 aa14.81□□□□□ -0.04
HMBOX1-208ENST00000521516 SHROOM2Q13796 1616 aa14.77□□□□□ -0.05
HMBOX1-208ENST00000521516 DIP2BQ9P265 1576 aa14.76□□□□□ -0.05
HMBOX1-208ENST00000521516 PBRM1Q86U86 1689 aa14.76□□□□□ -0.05
HMBOX1-208ENST00000521516 MAPKBP1O60336 1514 aa14.75□□□□□ -0.05
HMBOX1-208ENST00000521516 NUP160Q12769 1436 aa14.75□□□□□ -0.05
HMBOX1-208ENST00000521516 ADGRL1O94910 1474 aa14.75□□□□□ -0.05
HMBOX1-208ENST00000521516 GRIN2AQ12879 1464 aa14.73□□□□□ -0.05
HMBOX1-208ENST00000521516 CUX1P39880 1505 aa14.69□□□□□ -0.06
HMBOX1-208ENST00000521516 ABCA5Q8WWZ7 1642 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 177.9 ms