RNA–Protein interactions for RNA: ENST00000521331.5

PRKDC-204, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 1,087 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-204ENST00000521331 NISCHQ9Y2I1 1504 aa37.42■■■■□ 3.58
PRKDC-204ENST00000521331 ABCC9O60706 1549 aa33.71■■■□□ 2.99
PRKDC-204ENST00000521331 CCDC180Q9P1Z9 1646 aa33.59■■■□□ 2.97
PRKDC-204ENST00000521331 RB1CC1Q8TDY2 1594 aa32.07■■■□□ 2.72
PRKDC-204ENST00000521331 NACADO15069 1562 aa31.84■■■□□ 2.69
PRKDC-204ENST00000521331 DNAJC5BQ9UF47 199 aa31.7■■■□□ 2.67
PRKDC-204ENST00000521331 DCAF8L2P0C7V8 631 aa31.63■■■□□ 2.65
PRKDC-204ENST00000521331 MYO15BQ96JP2 1530 aa31.4■■■□□ 2.62
PRKDC-204ENST00000521331 PABPN1Q86U42 306 aaKnown RBP eCLIP31.38■■■□□ 2.61
PRKDC-204ENST00000521331 UNC13AQ9UPW8 1703 aa31.18■■■□□ 2.58
PRKDC-204ENST00000521331 BICRAQ9NZM4 1560 aa31.09■■■□□ 2.57
PRKDC-204ENST00000521331 ZCCHC6Q5VYS8 1495 aaKnown RBP31■■■□□ 2.55
PRKDC-204ENST00000521331 DCAF1Q9Y4B6 1507 aa30.94■■■□□ 2.54
PRKDC-204ENST00000521331 SHROOM4Q9ULL8 1493 aa30.78■■■□□ 2.52
PRKDC-204ENST00000521331 SCRIBQ14160 1630 aa30.58■■■□□ 2.49
PRKDC-204ENST00000521331 CC2D2AQ9P2K1 1620 aa30.43■■■□□ 2.46
PRKDC-204ENST00000521331 CECR2Q9BXF3 1484 aa30.41■■■□□ 2.46
PRKDC-204ENST00000521331 EIF4G1Q04637 1599 aaKnown RBP30.36■■■□□ 2.45
PRKDC-204ENST00000521331 NCAPD3P42695 1498 aa29.41■■■□□ 2.3
PRKDC-204ENST00000521331 ATAD2BQ9ULI0 1458 aa29.29■■■□□ 2.28
PRKDC-204ENST00000521331 DNAJC5Q9H3Z4 198 aa29.26■■■□□ 2.27
PRKDC-204ENST00000521331 SMARCA2P51531 1590 aa29.21■■■□□ 2.27
PRKDC-204ENST00000521331 SMARCA4P51532 1647 aa29.18■■■□□ 2.26
PRKDC-204ENST00000521331 HMGXB3Q12766 1538 aa29.16■■■□□ 2.26
PRKDC-204ENST00000521331 CUX2O14529 1486 aa29.16■■■□□ 2.26
PRKDC-204ENST00000521331 ERCC6Q03468 1493 aa29.16■■■□□ 2.26
PRKDC-204ENST00000521331 BAZ1AQ9NRL2 1556 aaPredicted RBP29.07■■■□□ 2.24
PRKDC-204ENST00000521331 BAZ1BQ9UIG0 1483 aaKnown RBP28.99■■■□□ 2.23
PRKDC-204ENST00000521331 PEG3Q9GZU2 1588 aa28.94■■■□□ 2.22
PRKDC-204ENST00000521331 NESP48681 1621 aa28.91■■■□□ 2.22
PRKDC-204ENST00000521331 MROH2BQ7Z745 1585 aa28.8■■■□□ 2.2
PRKDC-204ENST00000521331 LAMC3Q9Y6N6 1575 aa28.73■■■□□ 2.19
PRKDC-204ENST00000521331 THOC2Q8NI27 1593 aaKnown RBP28.63■■■□□ 2.17
PRKDC-204ENST00000521331 PDS5BQ9NTI5 1447 aa28.62■■■□□ 2.17
PRKDC-204ENST00000521331 CADPSQ9ULU8 1353 aa28.51■■■□□ 2.16
PRKDC-204ENST00000521331 KIF21AQ7Z4S6 1674 aa28.48■■■□□ 2.15
PRKDC-204ENST00000521331 WIZO95785 1651 aa28.41■■■□□ 2.14
PRKDC-204ENST00000521331 MRC2Q9UBG0 1479 aa28.35■■■□□ 2.13
PRKDC-204ENST00000521331 WDR62O43379 1518 aa28.27■■■□□ 2.12
PRKDC-204ENST00000521331 CEP164Q9UPV0 1460 aa28.21■■■□□ 2.11
PRKDC-204ENST00000521331 RSF1Q96T23 1441 aaPredicted RBP28.21■■■□□ 2.11
PRKDC-204ENST00000521331 FANCD2Q9BXW9 1451 aa28.17■■■□□ 2.1
PRKDC-204ENST00000521331 CFTRP13569 1480 aa28.16■■■□□ 2.1
PRKDC-204ENST00000521331 TOP2AP11388 1531 aaKnown RBP28.12■■■□□ 2.09
PRKDC-204ENST00000521331 URB2Q14146 1524 aaKnown RBP27.92■■■□□ 2.06
PRKDC-204ENST00000521331 TRIM41Q8WV44 630 aa27.9■■■□□ 2.06
PRKDC-204ENST00000521331 OSCARQ8IYS5 282 aa27.82■■■□□ 2.04
PRKDC-204ENST00000521331 CCDC88BA6NC98 1476 aa27.79■■■□□ 2.04
PRKDC-204ENST00000521331 PRDM2Q13029 1718 aa27.74■■■□□ 2.03
PRKDC-204ENST00000521331 IFT140Q96RY7 1462 aa27.68■■■□□ 2.02
PRKDC-204ENST00000521331 TOPBP1Q92547 1522 aa27.61■■■□□ 2.01
PRKDC-204ENST00000521331 ABCC8Q09428 1581 aa27.59■■■□□ 2.01
PRKDC-204ENST00000521331 ZNF608Q9ULD9 1512 aaPredicted RBP27.58■■■□□ 2.01
PRKDC-204ENST00000521331 DNMBPQ6XZF7 1577 aa27.5■■□□□ 1.99
PRKDC-204ENST00000521331 EIF4G3O43432 1585 aaKnown RBP27.41■■□□□ 1.98
PRKDC-204ENST00000521331 RIMBP3CA6NJZ7 1639 aa27.38■■□□□ 1.97
PRKDC-204ENST00000521331 RIMBP3BA6NNM3 1639 aa27.38■■□□□ 1.97
PRKDC-204ENST00000521331 RIMBP3Q9UFD9 1639 aa27.38■■□□□ 1.97
PRKDC-204ENST00000521331 TARBP1Q13395 1621 aaKnown RBP27.34■■□□□ 1.97
PRKDC-204ENST00000521331 AQRO60306 1485 aaKnown RBP eCLIP27.33■■□□□ 1.976e-7■■□□□ 11.9
PRKDC-204ENST00000521331 POLA1P09884 1462 aaPredicted RBP27.32■■□□□ 1.96
PRKDC-204ENST00000521331 ARHGEF11O15085 1522 aa27.32■■□□□ 1.96
PRKDC-204ENST00000521331 SOGA1O94964 1423 aa27.22■■□□□ 1.95
PRKDC-204ENST00000521331 RAD54L2Q9Y4B4 1467 aa27.2■■□□□ 1.95
PRKDC-204ENST00000521331 FBLN2P98095 1184 aa27.2■■□□□ 1.94
PRKDC-204ENST00000521331 CHD1O14646 1710 aa27.17■■□□□ 1.94
PRKDC-204ENST00000521331 TDRD9Q8NDG6 1382 aaKnown RBP27.17■■□□□ 1.94
PRKDC-204ENST00000521331 CYB5RLQ6IPT4 315 aa27.15■■□□□ 1.94
PRKDC-204ENST00000521331 FGD5Q6ZNL6 1462 aa27.13■■□□□ 1.93
PRKDC-204ENST00000521331 WDR97A6NE52 1622 aa27.12■■□□□ 1.93
PRKDC-204ENST00000521331 CUX1P39880 1505 aa27.07■■□□□ 1.92
PRKDC-204ENST00000521331 SNAPC4Q5SXM2 1469 aa27.06■■□□□ 1.92
PRKDC-204ENST00000521331 ARAP1Q96P48 1450 aa27.05■■□□□ 1.92
PRKDC-204ENST00000521331 MAGI1Q96QZ7 1491 aaPredicted RBP27.01■■□□□ 1.91
PRKDC-204ENST00000521331 CHMP7Q8WUX9 453 aaPredicted RBP27.01■■□□□ 1.91
PRKDC-204ENST00000521331 GRIN2BQ13224 1484 aa27■■□□□ 1.91
PRKDC-204ENST00000521331 CLASP1Q7Z460 1538 aa26.94■■□□□ 1.9
PRKDC-204ENST00000521331 SYNJ1O43426 1573 aa26.93■■□□□ 1.9
PRKDC-204ENST00000521331 SYNJ2O15056 1496 aa26.93■■□□□ 1.9
PRKDC-204ENST00000521331 TRHP20396 242 aaPredicted RBP26.89■■□□□ 1.9
PRKDC-204ENST00000521331 GAPVD1Q14C86 1478 aa26.88■■□□□ 1.89
PRKDC-204ENST00000521331 SUPT5HO00267 1087 aaKnown RBP26.87■■□□□ 1.89
PRKDC-204ENST00000521331 ABCA10Q8WWZ4 1543 aa26.85■■□□□ 1.89
PRKDC-204ENST00000521331 PBRM1Q86U86 1689 aa26.78■■□□□ 1.88
PRKDC-204ENST00000521331 ABCA5Q8WWZ7 1642 aa26.76■■□□□ 1.87
PRKDC-204ENST00000521331 WRNQ14191 1432 aaPredicted RBP eCLIP26.73■■□□□ 1.87
PRKDC-204ENST00000521331 GRIN2AQ12879 1464 aa26.63■■□□□ 1.85
PRKDC-204ENST00000521331 TOP2BQ02880 1626 aa26.61■■□□□ 1.85
PRKDC-204ENST00000521331 BIVM-ERCC5R4GMW8 1640 aa26.59■■□□□ 1.85
PRKDC-204ENST00000521331 ADAMTS12P58397 1594 aa26.58■■□□□ 1.85
PRKDC-204ENST00000521331 NUP160Q12769 1436 aa26.56■■□□□ 1.84
PRKDC-204ENST00000521331 FHAD1B1AJZ9 1412 aa26.56■■□□□ 1.84
PRKDC-204ENST00000521331 ERICH3Q5RHP9 1530 aa26.51■■□□□ 1.83
PRKDC-204ENST00000521331 CEP170Q5SW79 1584 aa26.5■■□□□ 1.83
PRKDC-204ENST00000521331 ERCC6L2Q5T890 1561 aa26.46■■□□□ 1.83
PRKDC-204ENST00000521331 SHROOM2Q13796 1616 aa26.41■■□□□ 1.82
PRKDC-204ENST00000521331 PRG4Q92954 1404 aaPredicted RBP26.31■■□□□ 1.8
PRKDC-204ENST00000521331 JPH4Q96JJ6 628 aa26.3■■□□□ 1.8
PRKDC-204ENST00000521331 RUSC2Q8N2Y8 1516 aa26.2■■□□□ 1.79
PRKDC-204ENST00000521331 AEBP2Q6ZN18 517 aaPredicted RBP26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms