RNA–Protein interactions for RNA: ENST00000521122.1

PVT1-210, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 221 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-210ENST00000521122 NISCHQ9Y2I1 1504 aa23.53■■□□□ 1.36
PVT1-210ENST00000521122 ABCC9O60706 1549 aa23.02■■□□□ 1.28
PVT1-210ENST00000521122 DNAJC5BQ9UF47 199 aa22.84■■□□□ 1.25
PVT1-210ENST00000521122 DNAJC5Q9H3Z4 198 aa22.01■■□□□ 1.11
PVT1-210ENST00000521122 CCDC180Q9P1Z9 1646 aa21.71■■□□□ 1.07
PVT1-210ENST00000521122 RB1CC1Q8TDY2 1594 aa21.33■■□□□ 1.01
PVT1-210ENST00000521122 PABPN1Q86U42 306 aaKnown RBP eCLIP21.21■□□□□ 0.99
PVT1-210ENST00000521122 CECR2Q9BXF3 1484 aa20.91■□□□□ 0.94
PVT1-210ENST00000521122 NACADO15069 1562 aa20.86■□□□□ 0.93
PVT1-210ENST00000521122 UNC13AQ9UPW8 1703 aa20.82■□□□□ 0.92
PVT1-210ENST00000521122 BICRAQ9NZM4 1560 aa20.77■□□□□ 0.92
PVT1-210ENST00000521122 CC2D2AQ9P2K1 1620 aa20.74■□□□□ 0.91
PVT1-210ENST00000521122 CUX2O14529 1486 aa20.45■□□□□ 0.86
PVT1-210ENST00000521122 TRIM41Q8WV44 630 aa20.41■□□□□ 0.86
PVT1-210ENST00000521122 SHROOM4Q9ULL8 1493 aa20.39■□□□□ 0.85
PVT1-210ENST00000521122 DCAF8L2P0C7V8 631 aa20.38■□□□□ 0.85
PVT1-210ENST00000521122 EIF4G1Q04637 1599 aaKnown RBP20.37■□□□□ 0.85
PVT1-210ENST00000521122 MYO15BQ96JP2 1530 aa20.16■□□□□ 0.82
PVT1-210ENST00000521122 ERCC6Q03468 1493 aa19.99■□□□□ 0.79
PVT1-210ENST00000521122 SCRIBQ14160 1630 aa19.7■□□□□ 0.74
PVT1-210ENST00000521122 AEBP2Q6ZN18 517 aaPredicted RBP19.58■□□□□ 0.72
PVT1-210ENST00000521122 THOC2Q8NI27 1593 aaKnown RBP19.49■□□□□ 0.71
PVT1-210ENST00000521122 NESP48681 1621 aa19.39■□□□□ 0.69
PVT1-210ENST00000521122 DCAF1Q9Y4B6 1507 aa19.38■□□□□ 0.69
PVT1-210ENST00000521122 NCAPD3P42695 1498 aa19.29■□□□□ 0.68
PVT1-210ENST00000521122 OSCARQ8IYS5 282 aa19.27■□□□□ 0.68
PVT1-210ENST00000521122 BAZ1AQ9NRL2 1556 aaPredicted RBP19.23■□□□□ 0.67
PVT1-210ENST00000521122 SMARCA2P51531 1590 aa19.21■□□□□ 0.67
PVT1-210ENST00000521122 ZCCHC6Q5VYS8 1495 aaKnown RBP19.21■□□□□ 0.67
PVT1-210ENST00000521122 RIMBP3CA6NJZ7 1639 aa19.16■□□□□ 0.66
PVT1-210ENST00000521122 RIMBP3BA6NNM3 1639 aa19.16■□□□□ 0.66
PVT1-210ENST00000521122 RIMBP3Q9UFD9 1639 aa19.16■□□□□ 0.66
PVT1-210ENST00000521122 TRHP20396 242 aaPredicted RBP19.11■□□□□ 0.65
PVT1-210ENST00000521122 KIF21AQ7Z4S6 1674 aa19.08■□□□□ 0.65
PVT1-210ENST00000521122 LAMC3Q9Y6N6 1575 aa19.06■□□□□ 0.64
PVT1-210ENST00000521122 ILDR1Q86SU0 546 aaPredicted RBP19.04■□□□□ 0.64
PVT1-210ENST00000521122 ATAD2BQ9ULI0 1458 aa19.02■□□□□ 0.63
PVT1-210ENST00000521122 HMGXB3Q12766 1538 aa19.01■□□□□ 0.63
PVT1-210ENST00000521122 PDS5BQ9NTI5 1447 aa19■□□□□ 0.63
PVT1-210ENST00000521122 ARHGEF11O15085 1522 aa18.97■□□□□ 0.63
PVT1-210ENST00000521122 WDR62O43379 1518 aa18.91■□□□□ 0.62
PVT1-210ENST00000521122 MRC2Q9UBG0 1479 aa18.9■□□□□ 0.62
PVT1-210ENST00000521122 CYB5RLQ6IPT4 315 aa18.89■□□□□ 0.61
PVT1-210ENST00000521122 BAZ1BQ9UIG0 1483 aaKnown RBP18.74■□□□□ 0.59
PVT1-210ENST00000521122 ARAP1Q96P48 1450 aa18.69■□□□□ 0.58
PVT1-210ENST00000521122 SMARCA4P51532 1647 aa18.63■□□□□ 0.57
PVT1-210ENST00000521122 CADPSQ9ULU8 1353 aa18.63■□□□□ 0.57
PVT1-210ENST00000521122 CEP164Q9UPV0 1460 aa18.55■□□□□ 0.56
PVT1-210ENST00000521122 PEG3Q9GZU2 1588 aa18.5■□□□□ 0.55
PVT1-210ENST00000521122 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
PVT1-210ENST00000521122 FANCD2Q9BXW9 1451 aa18.4■□□□□ 0.54
PVT1-210ENST00000521122 URB2Q14146 1524 aaKnown RBP18.34■□□□□ 0.53
PVT1-210ENST00000521122 ZNF608Q9ULD9 1512 aaPredicted RBP18.33■□□□□ 0.53
PVT1-210ENST00000521122 CHD1O14646 1710 aa18.26■□□□□ 0.51
PVT1-210ENST00000521122 IFT140Q96RY7 1462 aa18.25■□□□□ 0.51
PVT1-210ENST00000521122 KDM4FA0A1W2PPD8 638 aa18.2■□□□□ 0.5
PVT1-210ENST00000521122 EIF4G3O43432 1585 aaKnown RBP18.16■□□□□ 0.5
PVT1-210ENST00000521122 CFTRP13569 1480 aa18.14■□□□□ 0.49
PVT1-210ENST00000521122 FBLN2P98095 1184 aa18.12■□□□□ 0.49
PVT1-210ENST00000521122 MROH2BQ7Z745 1585 aa18.1■□□□□ 0.49
PVT1-210ENST00000521122 FBXO41Q8TF61 875 aa18.07■□□□□ 0.48
PVT1-210ENST00000521122 CLASP1Q7Z460 1538 aa18.07■□□□□ 0.48
PVT1-210ENST00000521122 ERCC6L2Q5T890 1561 aa18.05■□□□□ 0.48
PVT1-210ENST00000521122 LMTK3Q96Q04 1460 aa18.01■□□□□ 0.47
PVT1-210ENST00000521122 AQRO60306 1485 aaKnown RBP eCLIP17.99■□□□□ 0.47
PVT1-210ENST00000521122 GAPVD1Q14C86 1478 aa17.98■□□□□ 0.47
PVT1-210ENST00000521122 SOCS7O14512 581 aa17.94■□□□□ 0.46
PVT1-210ENST00000521122 KIF13AQ9H1H9 1805 aa17.93■□□□□ 0.46
PVT1-210ENST00000521122 HECW2Q9P2P5 1572 aa17.92■□□□□ 0.46
PVT1-210ENST00000521122 SYNJ1O43426 1573 aa17.91■□□□□ 0.46
PVT1-210ENST00000521122 TOPBP1Q92547 1522 aa17.9■□□□□ 0.46
PVT1-210ENST00000521122 TARBP1Q13395 1621 aaKnown RBP17.85■□□□□ 0.45
PVT1-210ENST00000521122 WIZO95785 1651 aa17.8■□□□□ 0.44
PVT1-210ENST00000521122 PRDM2Q13029 1718 aa17.79■□□□□ 0.44
PVT1-210ENST00000521122 CHMP7Q8WUX9 453 aaPredicted RBP17.79■□□□□ 0.44
PVT1-210ENST00000521122 ABCC8Q09428 1581 aa17.79■□□□□ 0.44
PVT1-210ENST00000521122 ILDR2Q71H61 639 aa17.78■□□□□ 0.44
PVT1-210ENST00000521122 SNAPC4Q5SXM2 1469 aa17.77■□□□□ 0.44
PVT1-210ENST00000521122 KDM6BO15054 1643 aa17.76■□□□□ 0.43
PVT1-210ENST00000521122 SYNJ2O15056 1496 aa17.72■□□□□ 0.43
PVT1-210ENST00000521122 ADGRL1O94910 1474 aa17.72■□□□□ 0.43
PVT1-210ENST00000521122 DNMBPQ6XZF7 1577 aa17.71■□□□□ 0.43
PVT1-210ENST00000521122 MAGI1Q96QZ7 1491 aaPredicted RBP17.69■□□□□ 0.42
PVT1-210ENST00000521122 FAM69CQ0P6D2 419 aa17.68■□□□□ 0.42
PVT1-210ENST00000521122 TDRD9Q8NDG6 1382 aaKnown RBP17.66■□□□□ 0.42
PVT1-210ENST00000521122 ABCC10Q5T3U5 1492 aa17.66■□□□□ 0.42
PVT1-210ENST00000521122 POLA1P09884 1462 aaPredicted RBP17.63■□□□□ 0.41
PVT1-210ENST00000521122 DISP3Q9P2K9 1392 aa17.61■□□□□ 0.41
PVT1-210ENST00000521122 WDR97A6NE52 1622 aa17.6■□□□□ 0.41
PVT1-210ENST00000521122 RAD54L2Q9Y4B4 1467 aa17.58■□□□□ 0.41
PVT1-210ENST00000521122 DIP2BQ9P265 1576 aa17.56■□□□□ 0.4
PVT1-210ENST00000521122 GRIN2BQ13224 1484 aa17.54■□□□□ 0.4
PVT1-210ENST00000521122 SOGA1O94964 1423 aa17.51■□□□□ 0.39
PVT1-210ENST00000521122 CEP170Q5SW79 1584 aa17.5■□□□□ 0.39
PVT1-210ENST00000521122 TOP2AP11388 1531 aaKnown RBP17.5■□□□□ 0.39
PVT1-210ENST00000521122 MAPKBP1O60336 1514 aa17.49■□□□□ 0.39
PVT1-210ENST00000521122 TSPOAP1O95153 1857 aa17.46■□□□□ 0.39
PVT1-210ENST00000521122 NPM1P06748 294 aaKnown RBP eCLIP17.39■□□□□ 0.37
PVT1-210ENST00000521122 SHROOM2Q13796 1616 aa17.39■□□□□ 0.37
PVT1-210ENST00000521122 PBRM1Q86U86 1689 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms