RNA–Protein interactions for RNA: ENST00000521067.1

PABPC1-217, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 3

Gene PABPC1, Length 492 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-217ENST00000521067 NISCHQ9Y2I1 1504 aa50.87■■■■■ 5.73
PABPC1-217ENST00000521067 ABCC9O60706 1549 aa45.64■■■■■ 4.9
PABPC1-217ENST00000521067 CCDC180Q9P1Z9 1646 aa45.45■■■■■ 4.87
PABPC1-217ENST00000521067 RB1CC1Q8TDY2 1594 aa43.33■■■■■ 4.53
PABPC1-217ENST00000521067 NACADO15069 1562 aa43.06■■■■■ 4.48
PABPC1-217ENST00000521067 DCAF8L2P0C7V8 631 aa43.04■■■■■ 4.48
PABPC1-217ENST00000521067 DNAJC5BQ9UF47 199 aa42.98■■■■■ 4.47
PABPC1-217ENST00000521067 PABPN1Q86U42 306 aaKnown RBP eCLIP42.61■■■■■ 4.41
PABPC1-217ENST00000521067 MYO15BQ96JP2 1530 aa42.48■■■■■ 4.39
PABPC1-217ENST00000521067 UNC13AQ9UPW8 1703 aa42.32■■■■■ 4.36
PABPC1-217ENST00000521067 BICRAQ9NZM4 1560 aa42.17■■■■■ 4.34
PABPC1-217ENST00000521067 ZCCHC6Q5VYS8 1495 aaKnown RBP42.13■■■■■ 4.34
PABPC1-217ENST00000521067 DCAF1Q9Y4B6 1507 aa41.96■■■■■ 4.31
PABPC1-217ENST00000521067 SCRIBQ14160 1630 aa41.54■■■■■ 4.24
PABPC1-217ENST00000521067 SHROOM4Q9ULL8 1493 aa41.46■■■■■ 4.23
PABPC1-217ENST00000521067 CC2D2AQ9P2K1 1620 aa41.16■■■■■ 4.18
PABPC1-217ENST00000521067 CECR2Q9BXF3 1484 aa41.09■■■■■ 4.17
PABPC1-217ENST00000521067 EIF4G1Q04637 1599 aaKnown RBP41.08■■■■■ 4.17
PABPC1-217ENST00000521067 NCAPD3P42695 1498 aa39.84■■■■□ 3.97
PABPC1-217ENST00000521067 ATAD2BQ9ULI0 1458 aa39.73■■■■□ 3.95
PABPC1-217ENST00000521067 SMARCA4P51532 1647 aa39.62■■■■□ 3.93
PABPC1-217ENST00000521067 SMARCA2P51531 1590 aa39.51■■■■□ 3.92
PABPC1-217ENST00000521067 HMGXB3Q12766 1538 aa39.45■■■■□ 3.91
PABPC1-217ENST00000521067 BAZ1AQ9NRL2 1556 aaPredicted RBP39.41■■■■□ 3.9
PABPC1-217ENST00000521067 DNAJC5Q9H3Z4 198 aa39.34■■■■□ 3.89
PABPC1-217ENST00000521067 ERCC6Q03468 1493 aa39.33■■■■□ 3.89
PABPC1-217ENST00000521067 BAZ1BQ9UIG0 1483 aaKnown RBP39.28■■■■□ 3.88
PABPC1-217ENST00000521067 NESP48681 1621 aa39.25■■■■□ 3.87
PABPC1-217ENST00000521067 CUX2O14529 1486 aa39.24■■■■□ 3.87
PABPC1-217ENST00000521067 MROH2BQ7Z745 1585 aa39.23■■■■□ 3.87
PABPC1-217ENST00000521067 PEG3Q9GZU2 1588 aa39.23■■■■□ 3.87
PABPC1-217ENST00000521067 LAMC3Q9Y6N6 1575 aa38.83■■■■□ 3.81
PABPC1-217ENST00000521067 THOC2Q8NI27 1593 aaKnown RBP38.71■■■■□ 3.79
PABPC1-217ENST00000521067 WIZO95785 1651 aa38.71■■■■□ 3.79
PABPC1-217ENST00000521067 PDS5BQ9NTI5 1447 aa38.67■■■■□ 3.78
PABPC1-217ENST00000521067 CADPSQ9ULU8 1353 aa38.66■■■■□ 3.78
PABPC1-217ENST00000521067 KIF21AQ7Z4S6 1674 aa38.58■■■■□ 3.77
PABPC1-217ENST00000521067 RSF1Q96T23 1441 aaPredicted RBP38.46■■■■□ 3.75
PABPC1-217ENST00000521067 MRC2Q9UBG0 1479 aa38.32■■■■□ 3.72
PABPC1-217ENST00000521067 WDR62O43379 1518 aa38.22■■■■□ 3.71
PABPC1-217ENST00000521067 CFTRP13569 1480 aa38.2■■■■□ 3.71
PABPC1-217ENST00000521067 TOP2AP11388 1531 aaKnown RBP38.18■■■■□ 3.7
PABPC1-217ENST00000521067 FANCD2Q9BXW9 1451 aa38.17■■■■□ 3.7
PABPC1-217ENST00000521067 CEP164Q9UPV0 1460 aa38.15■■■■□ 3.7
PABPC1-217ENST00000521067 URB2Q14146 1524 aaKnown RBP37.89■■■■□ 3.66
PABPC1-217ENST00000521067 CCDC88BA6NC98 1476 aa37.85■■■■□ 3.65
PABPC1-217ENST00000521067 TRIM41Q8WV44 630 aa37.61■■■■□ 3.61
PABPC1-217ENST00000521067 PRDM2Q13029 1718 aa37.57■■■■□ 3.6
PABPC1-217ENST00000521067 OSCARQ8IYS5 282 aa37.57■■■■□ 3.6
PABPC1-217ENST00000521067 TOPBP1Q92547 1522 aa37.45■■■■□ 3.59
PABPC1-217ENST00000521067 ZNF608Q9ULD9 1512 aaPredicted RBP37.45■■■■□ 3.59
PABPC1-217ENST00000521067 IFT140Q96RY7 1462 aa37.42■■■■□ 3.58
PABPC1-217ENST00000521067 ABCC8Q09428 1581 aa37.3■■■■□ 3.56
PABPC1-217ENST00000521067 DNMBPQ6XZF7 1577 aa37.25■■■■□ 3.55
PABPC1-217ENST00000521067 AQRO60306 1485 aaKnown RBP eCLIP37.13■■■■□ 3.539e-6■■□□□ 13.1
PABPC1-217ENST00000521067 EIF4G3O43432 1585 aaKnown RBP37.1■■■■□ 3.53
PABPC1-217ENST00000521067 TARBP1Q13395 1621 aaKnown RBP37.09■■■■□ 3.53
PABPC1-217ENST00000521067 POLA1P09884 1462 aaPredicted RBP37.08■■■■□ 3.53
PABPC1-217ENST00000521067 RAD54L2Q9Y4B4 1467 aa37.01■■■■□ 3.51
PABPC1-217ENST00000521067 RIMBP3CA6NJZ7 1639 aa36.97■■■■□ 3.51
PABPC1-217ENST00000521067 RIMBP3BA6NNM3 1639 aa36.97■■■■□ 3.51
PABPC1-217ENST00000521067 RIMBP3Q9UFD9 1639 aa36.97■■■■□ 3.51
PABPC1-217ENST00000521067 SOGA1O94964 1423 aa36.94■■■■□ 3.5
PABPC1-217ENST00000521067 TDRD9Q8NDG6 1382 aaKnown RBP36.91■■■■□ 3.5
PABPC1-217ENST00000521067 ARHGEF11O15085 1522 aa36.89■■■■□ 3.5
PABPC1-217ENST00000521067 FBLN2P98095 1184 aa36.87■■■■□ 3.49
PABPC1-217ENST00000521067 FGD5Q6ZNL6 1462 aa36.84■■■■□ 3.49
PABPC1-217ENST00000521067 CUX1P39880 1505 aa36.84■■■■□ 3.49
PABPC1-217ENST00000521067 SUPT5HO00267 1087 aaKnown RBP36.83■■■■□ 3.49
PABPC1-217ENST00000521067 CHD1O14646 1710 aa36.79■■■■□ 3.48
PABPC1-217ENST00000521067 CYB5RLQ6IPT4 315 aa36.73■■■■□ 3.47
PABPC1-217ENST00000521067 SNAPC4Q5SXM2 1469 aa36.67■■■■□ 3.46
PABPC1-217ENST00000521067 WDR97A6NE52 1622 aa36.59■■■■□ 3.45
PABPC1-217ENST00000521067 CHMP7Q8WUX9 453 aaPredicted RBP36.59■■■■□ 3.45
PABPC1-217ENST00000521067 GRIN2BQ13224 1484 aa36.56■■■■□ 3.44
PABPC1-217ENST00000521067 ARAP1Q96P48 1450 aa36.56■■■■□ 3.44
PABPC1-217ENST00000521067 MAGI1Q96QZ7 1491 aaPredicted RBP36.53■■■■□ 3.44
PABPC1-217ENST00000521067 GAPVD1Q14C86 1478 aa36.46■■■■□ 3.43
PABPC1-217ENST00000521067 CLASP1Q7Z460 1538 aa36.44■■■■□ 3.42
PABPC1-217ENST00000521067 SYNJ2O15056 1496 aa36.43■■■■□ 3.42
PABPC1-217ENST00000521067 ABCA10Q8WWZ4 1543 aa36.42■■■■□ 3.42
PABPC1-217ENST00000521067 SYNJ1O43426 1573 aa36.36■■■■□ 3.41
PABPC1-217ENST00000521067 ABCA5Q8WWZ7 1642 aa36.3■■■■□ 3.4
PABPC1-217ENST00000521067 PBRM1Q86U86 1689 aa36.3■■■■□ 3.4
PABPC1-217ENST00000521067 WRNQ14191 1432 aaPredicted RBP eCLIP36.29■■■■□ 3.4
PABPC1-217ENST00000521067 TRHP20396 242 aaPredicted RBP36.26■■■■□ 3.4
PABPC1-217ENST00000521067 TOP2BQ02880 1626 aa36.19■■■■□ 3.38
PABPC1-217ENST00000521067 BIVM-ERCC5R4GMW8 1640 aa36.15■■■■□ 3.38
PABPC1-217ENST00000521067 GRIN2AQ12879 1464 aa36.1■■■■□ 3.37
PABPC1-217ENST00000521067 ADAMTS12P58397 1594 aa36.02■■■■□ 3.36
PABPC1-217ENST00000521067 NUP160Q12769 1436 aa36■■■■□ 3.35
PABPC1-217ENST00000521067 FHAD1B1AJZ9 1412 aa36■■■■□ 3.35
PABPC1-217ENST00000521067 CEP170Q5SW79 1584 aa35.97■■■■□ 3.35
PABPC1-217ENST00000521067 ERCC6L2Q5T890 1561 aa35.96■■■■□ 3.35
PABPC1-217ENST00000521067 ERICH3Q5RHP9 1530 aa35.92■■■■□ 3.34
PABPC1-217ENST00000521067 SHROOM2Q13796 1616 aa35.76■■■■□ 3.32
PABPC1-217ENST00000521067 JPH4Q96JJ6 628 aa35.72■■■■□ 3.31
PABPC1-217ENST00000521067 PRG4Q92954 1404 aaPredicted RBP35.67■■■■□ 3.3
PABPC1-217ENST00000521067 IGF1RP08069 1367 aa35.63■■■■□ 3.29
PABPC1-217ENST00000521067 KIF27Q86VH2 1401 aa35.52■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms