RNA–Protein interactions for RNA: ENST00000520913.1

PVT1-209, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 584 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-209ENST00000520913 NISCHQ9Y2I1 1504 aa26.79■■□□□ 1.88
PVT1-209ENST00000520913 CCDC180Q9P1Z9 1646 aa24.13■■□□□ 1.45
PVT1-209ENST00000520913 ABCC9O60706 1549 aa23.69■■□□□ 1.38
PVT1-209ENST00000520913 RB1CC1Q8TDY2 1594 aa22.76■■□□□ 1.23
PVT1-209ENST00000520913 NACADO15069 1562 aa22.63■■□□□ 1.21
PVT1-209ENST00000520913 MYO15BQ96JP2 1530 aa22.4■■□□□ 1.18
PVT1-209ENST00000520913 UNC13AQ9UPW8 1703 aa22.38■■□□□ 1.17
PVT1-209ENST00000520913 DCAF8L2P0C7V8 631 aa22.3■■□□□ 1.16
PVT1-209ENST00000520913 ZCCHC6Q5VYS8 1495 aaKnown RBP22.28■■□□□ 1.16
PVT1-209ENST00000520913 DCAF1Q9Y4B6 1507 aa22.2■■□□□ 1.14
PVT1-209ENST00000520913 BICRAQ9NZM4 1560 aa22.06■■□□□ 1.12
PVT1-209ENST00000520913 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
PVT1-209ENST00000520913 SCRIBQ14160 1630 aa21.89■■□□□ 1.09
PVT1-209ENST00000520913 DNAJC5BQ9UF47 199 aa21.86■■□□□ 1.09
PVT1-209ENST00000520913 SHROOM4Q9ULL8 1493 aa21.85■■□□□ 1.09
PVT1-209ENST00000520913 EIF4G1Q04637 1599 aaKnown RBP21.51■■□□□ 1.03
PVT1-209ENST00000520913 CC2D2AQ9P2K1 1620 aa21.5■■□□□ 1.03
PVT1-209ENST00000520913 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
PVT1-209ENST00000520913 SMARCA4P51532 1647 aa20.93■□□□□ 0.94
PVT1-209ENST00000520913 SMARCA2P51531 1590 aa20.83■□□□□ 0.92
PVT1-209ENST00000520913 BAZ1AQ9NRL2 1556 aaPredicted RBP20.83■□□□□ 0.92
PVT1-209ENST00000520913 NCAPD3P42695 1498 aa20.81■□□□□ 0.92
PVT1-209ENST00000520913 HMGXB3Q12766 1538 aa20.8■□□□□ 0.92
PVT1-209ENST00000520913 ATAD2BQ9ULI0 1458 aa20.78■□□□□ 0.92
PVT1-209ENST00000520913 PEG3Q9GZU2 1588 aa20.72■□□□□ 0.91
PVT1-209ENST00000520913 BAZ1BQ9UIG0 1483 aaKnown RBP20.64■□□□□ 0.89
PVT1-209ENST00000520913 MROH2BQ7Z745 1585 aa20.62■□□□□ 0.89
PVT1-209ENST00000520913 ERCC6Q03468 1493 aa20.48■□□□□ 0.87
PVT1-209ENST00000520913 WIZO95785 1651 aa20.45■□□□□ 0.86
PVT1-209ENST00000520913 LAMC3Q9Y6N6 1575 aa20.43■□□□□ 0.86
PVT1-209ENST00000520913 NESP48681 1621 aa20.42■□□□□ 0.86
PVT1-209ENST00000520913 CUX2O14529 1486 aa20.41■□□□□ 0.86
PVT1-209ENST00000520913 KIF21AQ7Z4S6 1674 aa20.33■□□□□ 0.85
PVT1-209ENST00000520913 THOC2Q8NI27 1593 aaKnown RBP20.31■□□□□ 0.84
PVT1-209ENST00000520913 RSF1Q96T23 1441 aaPredicted RBP20.22■□□□□ 0.83
PVT1-209ENST00000520913 TOP2AP11388 1531 aaKnown RBP20.22■□□□□ 0.83
PVT1-209ENST00000520913 PDS5BQ9NTI5 1447 aa20.19■□□□□ 0.82
PVT1-209ENST00000520913 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
PVT1-209ENST00000520913 PRDM2Q13029 1718 aa20.13■□□□□ 0.81
PVT1-209ENST00000520913 MRC2Q9UBG0 1479 aa20.05■□□□□ 0.8
PVT1-209ENST00000520913 WDR62O43379 1518 aa20.03■□□□□ 0.8
PVT1-209ENST00000520913 CEP164Q9UPV0 1460 aa20.03■□□□□ 0.8
PVT1-209ENST00000520913 CFTRP13569 1480 aa20.02■□□□□ 0.8
PVT1-209ENST00000520913 FANCD2Q9BXW9 1451 aa19.98■□□□□ 0.79
PVT1-209ENST00000520913 DNAJC5Q9H3Z4 198 aa19.97■□□□□ 0.79
PVT1-209ENST00000520913 CCDC88BA6NC98 1476 aa19.88■□□□□ 0.77
PVT1-209ENST00000520913 URB2Q14146 1524 aaKnown RBP19.81■□□□□ 0.76
PVT1-209ENST00000520913 DNMBPQ6XZF7 1577 aa19.66■□□□□ 0.74
PVT1-209ENST00000520913 TOPBP1Q92547 1522 aa19.64■□□□□ 0.73
PVT1-209ENST00000520913 ABCC8Q09428 1581 aa19.63■□□□□ 0.73
PVT1-209ENST00000520913 IFT140Q96RY7 1462 aa19.59■□□□□ 0.73
PVT1-209ENST00000520913 EIF4G3O43432 1585 aaKnown RBP19.55■□□□□ 0.72
PVT1-209ENST00000520913 TARBP1Q13395 1621 aaKnown RBP19.51■□□□□ 0.71
PVT1-209ENST00000520913 ZNF608Q9ULD9 1512 aaPredicted RBP19.49■□□□□ 0.71
PVT1-209ENST00000520913 POLA1P09884 1462 aaPredicted RBP19.45■□□□□ 0.7
PVT1-209ENST00000520913 WDR97A6NE52 1622 aa19.41■□□□□ 0.7
PVT1-209ENST00000520913 CHD1O14646 1710 aa19.4■□□□□ 0.7
PVT1-209ENST00000520913 CUX1P39880 1505 aa19.38■□□□□ 0.69
PVT1-209ENST00000520913 SUPT5HO00267 1087 aaKnown RBP19.37■□□□□ 0.69
PVT1-209ENST00000520913 FGD5Q6ZNL6 1462 aa19.36■□□□□ 0.69
PVT1-209ENST00000520913 OSCARQ8IYS5 282 aa19.34■□□□□ 0.69
PVT1-209ENST00000520913 RAD54L2Q9Y4B4 1467 aa19.32■□□□□ 0.68
PVT1-209ENST00000520913 AQRO60306 1485 aaKnown RBP eCLIP19.3■□□□□ 0.683e-7■■□□□ 11.6
PVT1-209ENST00000520913 SOGA1O94964 1423 aa19.3■□□□□ 0.68
PVT1-209ENST00000520913 PBRM1Q86U86 1689 aa19.29■□□□□ 0.68
PVT1-209ENST00000520913 RIMBP3CA6NJZ7 1639 aa19.27■□□□□ 0.68
PVT1-209ENST00000520913 RIMBP3BA6NNM3 1639 aa19.27■□□□□ 0.68
PVT1-209ENST00000520913 RIMBP3Q9UFD9 1639 aa19.27■□□□□ 0.68
PVT1-209ENST00000520913 BIVM-ERCC5R4GMW8 1640 aa19.25■□□□□ 0.67
PVT1-209ENST00000520913 ABCA5Q8WWZ7 1642 aa19.2■□□□□ 0.66
PVT1-209ENST00000520913 SNAPC4Q5SXM2 1469 aa19.2■□□□□ 0.66
PVT1-209ENST00000520913 TDRD9Q8NDG6 1382 aaKnown RBP19.19■□□□□ 0.66
PVT1-209ENST00000520913 TOP2BQ02880 1626 aa19.19■□□□□ 0.66
PVT1-209ENST00000520913 MAGI1Q96QZ7 1491 aaPredicted RBP19.18■□□□□ 0.66
PVT1-209ENST00000520913 TRIM41Q8WV44 630 aa19.18■□□□□ 0.66
PVT1-209ENST00000520913 ARHGEF11O15085 1522 aa19.18■□□□□ 0.66
PVT1-209ENST00000520913 GRIN2BQ13224 1484 aa19.16■□□□□ 0.66
PVT1-209ENST00000520913 ABCA10Q8WWZ4 1543 aa19.16■□□□□ 0.66
PVT1-209ENST00000520913 SYNJ1O43426 1573 aa19.15■□□□□ 0.66
PVT1-209ENST00000520913 GAPVD1Q14C86 1478 aa19.12■□□□□ 0.65
PVT1-209ENST00000520913 WRNQ14191 1432 aaPredicted RBP eCLIP19.11■□□□□ 0.65
PVT1-209ENST00000520913 CLASP1Q7Z460 1538 aa19.1■□□□□ 0.65
PVT1-209ENST00000520913 SYNJ2O15056 1496 aa19.09■□□□□ 0.65
PVT1-209ENST00000520913 FBLN2P98095 1184 aa19.07■□□□□ 0.64
PVT1-209ENST00000520913 ADAMTS12P58397 1594 aa19.04■□□□□ 0.64
PVT1-209ENST00000520913 ARAP1Q96P48 1450 aa18.99■□□□□ 0.63
PVT1-209ENST00000520913 CHMP7Q8WUX9 453 aaPredicted RBP18.99■□□□□ 0.63
PVT1-209ENST00000520913 ERICH3Q5RHP9 1530 aa18.96■□□□□ 0.63
PVT1-209ENST00000520913 GRIN2AQ12879 1464 aa18.94■□□□□ 0.62
PVT1-209ENST00000520913 CEP170Q5SW79 1584 aa18.9■□□□□ 0.62
PVT1-209ENST00000520913 FHAD1B1AJZ9 1412 aa18.88■□□□□ 0.61
PVT1-209ENST00000520913 CYB5RLQ6IPT4 315 aa18.85■□□□□ 0.61
PVT1-209ENST00000520913 SHROOM2Q13796 1616 aa18.85■□□□□ 0.61
PVT1-209ENST00000520913 NUP160Q12769 1436 aa18.84■□□□□ 0.61
PVT1-209ENST00000520913 CUL7Q14999 1698 aa18.82■□□□□ 0.6
PVT1-209ENST00000520913 RUSC2Q8N2Y8 1516 aa18.78■□□□□ 0.6
PVT1-209ENST00000520913 ERCC6L2Q5T890 1561 aa18.76■□□□□ 0.59
PVT1-209ENST00000520913 KIF27Q86VH2 1401 aa18.73■□□□□ 0.59
PVT1-209ENST00000520913 PRG4Q92954 1404 aaPredicted RBP18.6■□□□□ 0.57
PVT1-209ENST00000520913 IGF1RP08069 1367 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms