RNA–Protein interactions for RNA: ENST00000520860.1

SRGAP3-212, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5

Gene SRGAP3, Length 422 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-212ENST00000520860 NISCHQ9Y2I1 1504 aa33.7■■■□□ 2.99
SRGAP3-212ENST00000520860 ABCC9O60706 1549 aa31.17■■■□□ 2.58
SRGAP3-212ENST00000520860 CCDC180Q9P1Z9 1646 aa30.51■■■□□ 2.48
SRGAP3-212ENST00000520860 DNAJC5BQ9UF47 199 aa29.77■■■□□ 2.36
SRGAP3-212ENST00000520860 RB1CC1Q8TDY2 1594 aa29.39■■■□□ 2.29
SRGAP3-212ENST00000520860 NACADO15069 1562 aa29.02■■■□□ 2.24
SRGAP3-212ENST00000520860 PABPN1Q86U42 306 aaKnown RBP eCLIP28.92■■■□□ 2.22
SRGAP3-212ENST00000520860 DCAF8L2P0C7V8 631 aa28.79■■■□□ 2.2
SRGAP3-212ENST00000520860 UNC13AQ9UPW8 1703 aa28.64■■■□□ 2.18
SRGAP3-212ENST00000520860 BICRAQ9NZM4 1560 aa28.5■■■□□ 2.15
SRGAP3-212ENST00000520860 MYO15BQ96JP2 1530 aa28.4■■■□□ 2.14
SRGAP3-212ENST00000520860 CECR2Q9BXF3 1484 aa28.15■■■□□ 2.1
SRGAP3-212ENST00000520860 SHROOM4Q9ULL8 1493 aa28.11■■■□□ 2.09
SRGAP3-212ENST00000520860 CC2D2AQ9P2K1 1620 aa28.1■■■□□ 2.09
SRGAP3-212ENST00000520860 EIF4G1Q04637 1599 aaKnown RBP27.88■■■□□ 2.05
SRGAP3-212ENST00000520860 DNAJC5Q9H3Z4 198 aa27.86■■■□□ 2.05
SRGAP3-212ENST00000520860 DCAF1Q9Y4B6 1507 aa27.79■■■□□ 2.04
SRGAP3-212ENST00000520860 ZCCHC6Q5VYS8 1495 aaKnown RBP27.79■■■□□ 2.04
SRGAP3-212ENST00000520860 SCRIBQ14160 1630 aa27.78■■■□□ 2.04
SRGAP3-212ENST00000520860 CUX2O14529 1486 aa27.14■■□□□ 1.94
SRGAP3-212ENST00000520860 ERCC6Q03468 1493 aa27■■□□□ 1.91
SRGAP3-212ENST00000520860 NCAPD3P42695 1498 aa26.8■■□□□ 1.88
SRGAP3-212ENST00000520860 ATAD2BQ9ULI0 1458 aa26.62■■□□□ 1.85
SRGAP3-212ENST00000520860 NESP48681 1621 aa26.57■■□□□ 1.84
SRGAP3-212ENST00000520860 HMGXB3Q12766 1538 aa26.54■■□□□ 1.84
SRGAP3-212ENST00000520860 SMARCA2P51531 1590 aa26.54■■□□□ 1.84
SRGAP3-212ENST00000520860 SMARCA4P51532 1647 aa26.42■■□□□ 1.82
SRGAP3-212ENST00000520860 THOC2Q8NI27 1593 aaKnown RBP26.41■■□□□ 1.82
SRGAP3-212ENST00000520860 TRIM41Q8WV44 630 aa26.4■■□□□ 1.82
SRGAP3-212ENST00000520860 BAZ1BQ9UIG0 1483 aaKnown RBP26.36■■□□□ 1.81
SRGAP3-212ENST00000520860 LAMC3Q9Y6N6 1575 aa26.29■■□□□ 1.8
SRGAP3-212ENST00000520860 BAZ1AQ9NRL2 1556 aaPredicted RBP26.22■■□□□ 1.79
SRGAP3-212ENST00000520860 PDS5BQ9NTI5 1447 aa26.21■■□□□ 1.79
SRGAP3-212ENST00000520860 KIF21AQ7Z4S6 1674 aa26.19■■□□□ 1.78
SRGAP3-212ENST00000520860 PEG3Q9GZU2 1588 aa26.16■■□□□ 1.78
SRGAP3-212ENST00000520860 MRC2Q9UBG0 1479 aa26■■□□□ 1.75
SRGAP3-212ENST00000520860 CADPSQ9ULU8 1353 aa25.96■■□□□ 1.75
SRGAP3-212ENST00000520860 MROH2BQ7Z745 1585 aa25.95■■□□□ 1.74
SRGAP3-212ENST00000520860 WDR62O43379 1518 aa25.93■■□□□ 1.74
SRGAP3-212ENST00000520860 OSCARQ8IYS5 282 aa25.82■■□□□ 1.72
SRGAP3-212ENST00000520860 CEP164Q9UPV0 1460 aa25.78■■□□□ 1.72
SRGAP3-212ENST00000520860 FANCD2Q9BXW9 1451 aa25.68■■□□□ 1.7
SRGAP3-212ENST00000520860 WIZO95785 1651 aa25.59■■□□□ 1.69
SRGAP3-212ENST00000520860 CFTRP13569 1480 aa25.52■■□□□ 1.68
SRGAP3-212ENST00000520860 RIMBP3CA6NJZ7 1639 aa25.5■■□□□ 1.67
SRGAP3-212ENST00000520860 RIMBP3BA6NNM3 1639 aa25.5■■□□□ 1.67
SRGAP3-212ENST00000520860 RIMBP3Q9UFD9 1639 aa25.5■■□□□ 1.67
SRGAP3-212ENST00000520860 URB2Q14146 1524 aaKnown RBP25.48■■□□□ 1.67
SRGAP3-212ENST00000520860 ARHGEF11O15085 1522 aa25.37■■□□□ 1.65
SRGAP3-212ENST00000520860 IFT140Q96RY7 1462 aa25.28■■□□□ 1.64
SRGAP3-212ENST00000520860 ZNF608Q9ULD9 1512 aaPredicted RBP25.27■■□□□ 1.64
SRGAP3-212ENST00000520860 CYB5RLQ6IPT4 315 aa25.26■■□□□ 1.63
SRGAP3-212ENST00000520860 TOP2AP11388 1531 aaKnown RBP25.26■■□□□ 1.63
SRGAP3-212ENST00000520860 TRHP20396 242 aaPredicted RBP25.22■■□□□ 1.63
SRGAP3-212ENST00000520860 RSF1Q96T23 1441 aaPredicted RBP25.19■■□□□ 1.62
SRGAP3-212ENST00000520860 PRDM2Q13029 1718 aa25.17■■□□□ 1.62
SRGAP3-212ENST00000520860 TOPBP1Q92547 1522 aa25.11■■□□□ 1.61
SRGAP3-212ENST00000520860 EIF4G3O43432 1585 aaKnown RBP25.1■■□□□ 1.61
SRGAP3-212ENST00000520860 ARAP1Q96P48 1450 aa25.08■■□□□ 1.6
SRGAP3-212ENST00000520860 ABCC8Q09428 1581 aa25.04■■□□□ 1.6
SRGAP3-212ENST00000520860 CHD1O14646 1710 aa25.03■■□□□ 1.6
SRGAP3-212ENST00000520860 FBLN2P98095 1184 aa25■■□□□ 1.59
SRGAP3-212ENST00000520860 AEBP2Q6ZN18 517 aaPredicted RBP24.98■■□□□ 1.59
SRGAP3-212ENST00000520860 AQRO60306 1485 aaKnown RBP eCLIP24.97■■□□□ 1.59
SRGAP3-212ENST00000520860 CCDC88BA6NC98 1476 aa24.96■■□□□ 1.59
SRGAP3-212ENST00000520860 DNMBPQ6XZF7 1577 aa24.95■■□□□ 1.58
SRGAP3-212ENST00000520860 TARBP1Q13395 1621 aaKnown RBP24.9■■□□□ 1.58
SRGAP3-212ENST00000520860 POLA1P09884 1462 aaPredicted RBP24.81■■□□□ 1.56
SRGAP3-212ENST00000520860 TDRD9Q8NDG6 1382 aaKnown RBP24.74■■□□□ 1.55
SRGAP3-212ENST00000520860 CLASP1Q7Z460 1538 aa24.73■■□□□ 1.55
SRGAP3-212ENST00000520860 RAD54L2Q9Y4B4 1467 aa24.72■■□□□ 1.55
SRGAP3-212ENST00000520860 SNAPC4Q5SXM2 1469 aa24.71■■□□□ 1.55
SRGAP3-212ENST00000520860 SOGA1O94964 1423 aa24.7■■□□□ 1.55
SRGAP3-212ENST00000520860 CHMP7Q8WUX9 453 aaPredicted RBP24.7■■□□□ 1.54
SRGAP3-212ENST00000520860 SYNJ1O43426 1573 aa24.7■■□□□ 1.54
SRGAP3-212ENST00000520860 WDR97A6NE52 1622 aa24.63■■□□□ 1.53
SRGAP3-212ENST00000520860 MAGI1Q96QZ7 1491 aaPredicted RBP24.63■■□□□ 1.53
SRGAP3-212ENST00000520860 GRIN2BQ13224 1484 aa24.57■■□□□ 1.52
SRGAP3-212ENST00000520860 FGD5Q6ZNL6 1462 aa24.57■■□□□ 1.52
SRGAP3-212ENST00000520860 SYNJ2O15056 1496 aa24.56■■□□□ 1.52
SRGAP3-212ENST00000520860 GAPVD1Q14C86 1478 aa24.55■■□□□ 1.52
SRGAP3-212ENST00000520860 CUX1P39880 1505 aa24.42■■□□□ 1.5
SRGAP3-212ENST00000520860 PBRM1Q86U86 1689 aa24.37■■□□□ 1.49
SRGAP3-212ENST00000520860 ERCC6L2Q5T890 1561 aa24.28■■□□□ 1.48
SRGAP3-212ENST00000520860 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
SRGAP3-212ENST00000520860 ABCA5Q8WWZ7 1642 aa24.24■■□□□ 1.47
SRGAP3-212ENST00000520860 GRIN2AQ12879 1464 aa24.24■■□□□ 1.47
SRGAP3-212ENST00000520860 CEP170Q5SW79 1584 aa24.22■■□□□ 1.47
SRGAP3-212ENST00000520860 NUP160Q12769 1436 aa24.18■■□□□ 1.46
SRGAP3-212ENST00000520860 KIF13AQ9H1H9 1805 aa24.14■■□□□ 1.45
SRGAP3-212ENST00000520860 ADAMTS12P58397 1594 aa24.12■■□□□ 1.45
SRGAP3-212ENST00000520860 SHROOM2Q13796 1616 aa24.11■■□□□ 1.45
SRGAP3-212ENST00000520860 FHAD1B1AJZ9 1412 aa24.06■■□□□ 1.44
SRGAP3-212ENST00000520860 WRNQ14191 1432 aaPredicted RBP eCLIP24.06■■□□□ 1.44
SRGAP3-212ENST00000520860 FAM69CQ0P6D2 419 aa24.02■■□□□ 1.44
SRGAP3-212ENST00000520860 PRG4Q92954 1404 aaPredicted RBP24.01■■□□□ 1.43
SRGAP3-212ENST00000520860 ABCC10Q5T3U5 1492 aa23.99■■□□□ 1.43
SRGAP3-212ENST00000520860 NPM1P06748 294 aaKnown RBP eCLIP23.98■■□□□ 1.43
SRGAP3-212ENST00000520860 JPH4Q96JJ6 628 aa23.95■■□□□ 1.42
SRGAP3-212ENST00000520860 ERICH3Q5RHP9 1530 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms