RNA–Protein interactions for RNA: ENST00000520851.1

PDGFRB-208, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 2

Gene PDGFRB, Length 406 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-208ENST00000520851 AEBP2Q6ZN18 517 aaPredicted RBP19.97■□□□□ 0.79
PDGFRB-208ENST00000520851 NISCHQ9Y2I1 1504 aa19.92■□□□□ 0.78
PDGFRB-208ENST00000520851 CHIC1Q5VXU3 224 aa19.69■□□□□ 0.74
PDGFRB-208ENST00000520851 CCDC180Q9P1Z9 1646 aa17.76■□□□□ 0.43
PDGFRB-208ENST00000520851 PHF23Q9BUL5 403 aaPredicted RBP17.36■□□□□ 0.37
PDGFRB-208ENST00000520851 ABCC9O60706 1549 aa16.91■□□□□ 0.3
PDGFRB-208ENST00000520851 SENP3Q9H4L4 574 aaPredicted RBP16.9■□□□□ 0.3
PDGFRB-208ENST00000520851 ZCCHC6Q5VYS8 1495 aaKnown RBP16.65■□□□□ 0.26
PDGFRB-208ENST00000520851 NACADO15069 1562 aa16.56■□□□□ 0.24
PDGFRB-208ENST00000520851 DCAF1Q9Y4B6 1507 aa16.56■□□□□ 0.24
PDGFRB-208ENST00000520851 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
PDGFRB-208ENST00000520851 RB1CC1Q8TDY2 1594 aa16.53■□□□□ 0.24
PDGFRB-208ENST00000520851 DCAF8L2P0C7V8 631 aa16.44■□□□□ 0.22
PDGFRB-208ENST00000520851 UNC13AQ9UPW8 1703 aa16.24■□□□□ 0.19
PDGFRB-208ENST00000520851 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
PDGFRB-208ENST00000520851 SCRIBQ14160 1630 aa16.08■□□□□ 0.16
PDGFRB-208ENST00000520851 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
PDGFRB-208ENST00000520851 SHROOM4Q9ULL8 1493 aa15.9■□□□□ 0.14
PDGFRB-208ENST00000520851 PABPN1Q86U42 306 aaKnown RBP eCLIP15.76■□□□□ 0.11
PDGFRB-208ENST00000520851 FOXD1Q16676 465 aa15.67■□□□□ 0.1
PDGFRB-208ENST00000520851 EIF4G1Q04637 1599 aaKnown RBP15.51■□□□□ 0.07
PDGFRB-208ENST00000520851 BAZ1AQ9NRL2 1556 aaPredicted RBP15.48■□□□□ 0.07
PDGFRB-208ENST00000520851 SMARCA4P51532 1647 aa15.45■□□□□ 0.06
PDGFRB-208ENST00000520851 CECR2Q9BXF3 1484 aa15.4■□□□□ 0.06
PDGFRB-208ENST00000520851 CC2D2AQ9P2K1 1620 aa15.39■□□□□ 0.05
PDGFRB-208ENST00000520851 SMARCA2P51531 1590 aa15.32■□□□□ 0.04
PDGFRB-208ENST00000520851 PEG3Q9GZU2 1588 aa15.32■□□□□ 0.04
PDGFRB-208ENST00000520851 MROH2BQ7Z745 1585 aa15.31■□□□□ 0.04
PDGFRB-208ENST00000520851 ADRA2BP18089 450 aa15.26■□□□□ 0.03
PDGFRB-208ENST00000520851 PPP6R1Q9UPN7 881 aa15.26■□□□□ 0.03
PDGFRB-208ENST00000520851 WIZO95785 1651 aa15.23■□□□□ 0.03
PDGFRB-208ENST00000520851 ATAD2BQ9ULI0 1458 aa15.22■□□□□ 0.03
PDGFRB-208ENST00000520851 HMGXB3Q12766 1538 aa15.22■□□□□ 0.03
PDGFRB-208ENST00000520851 RSF1Q96T23 1441 aaPredicted RBP15.21■□□□□ 0.03
PDGFRB-208ENST00000520851 NCAPD3P42695 1498 aa15.2■□□□□ 0.02
PDGFRB-208ENST00000520851 DNAJC5BQ9UF47 199 aa15.16■□□□□ 0.02
PDGFRB-208ENST00000520851 BAZ1BQ9UIG0 1483 aaKnown RBP15.15■□□□□ 0.02
PDGFRB-208ENST00000520851 TOP2AP11388 1531 aaKnown RBP15.08■□□□□ 0.01
PDGFRB-208ENST00000520851 SUPT5HO00267 1087 aaKnown RBP14.97□□□□□ -0.01
PDGFRB-208ENST00000520851 PRDM2Q13029 1718 aa14.91□□□□□ -0.02
PDGFRB-208ENST00000520851 LAMC3Q9Y6N6 1575 aa14.85□□□□□ -0.03
PDGFRB-208ENST00000520851 PIAS4Q8N2W9 510 aaPredicted RBP14.84□□□□□ -0.03
PDGFRB-208ENST00000520851 CCDC88BA6NC98 1476 aa14.83□□□□□ -0.03
PDGFRB-208ENST00000520851 CADPSQ9ULU8 1353 aa14.74□□□□□ -0.05
PDGFRB-208ENST00000520851 CFTRP13569 1480 aa14.73□□□□□ -0.05
PDGFRB-208ENST00000520851 KIF21AQ7Z4S6 1674 aa14.69□□□□□ -0.06
PDGFRB-208ENST00000520851 NESP48681 1621 aa14.69□□□□□ -0.06
PDGFRB-208ENST00000520851 PDS5BQ9NTI5 1447 aa14.67□□□□□ -0.06
PDGFRB-208ENST00000520851 ERCC6Q03468 1493 aa14.62□□□□□ -0.07
PDGFRB-208ENST00000520851 FANCD2Q9BXW9 1451 aa14.59□□□□□ -0.07
PDGFRB-208ENST00000520851 CEP164Q9UPV0 1460 aa14.58□□□□□ -0.08
PDGFRB-208ENST00000520851 THOC2Q8NI27 1593 aaKnown RBP14.52□□□□□ -0.08
PDGFRB-208ENST00000520851 ABCC8Q09428 1581 aa14.51□□□□□ -0.09
PDGFRB-208ENST00000520851 MRC2Q9UBG0 1479 aa14.5□□□□□ -0.09
PDGFRB-208ENST00000520851 WDR62O43379 1518 aa14.46□□□□□ -0.09
PDGFRB-208ENST00000520851 DNMBPQ6XZF7 1577 aa14.46□□□□□ -0.09
PDGFRB-208ENST00000520851 BIVM-ERCC5R4GMW8 1640 aa14.43□□□□□ -0.1
PDGFRB-208ENST00000520851 URB2Q14146 1524 aaKnown RBP14.41□□□□□ -0.1
PDGFRB-208ENST00000520851 CUX2O14529 1486 aa14.4□□□□□ -0.1
PDGFRB-208ENST00000520851 TOPBP1Q92547 1522 aa14.4□□□□□ -0.1
PDGFRB-208ENST00000520851 TOP2BQ02880 1626 aa14.39□□□□□ -0.11
PDGFRB-208ENST00000520851 WRNQ14191 1432 aaPredicted RBP eCLIP14.38□□□□□ -0.11
PDGFRB-208ENST00000520851 CUX1P39880 1505 aa14.36□□□□□ -0.11
PDGFRB-208ENST00000520851 MSH5O43196 834 aa14.35□□□□□ -0.11
PDGFRB-208ENST00000520851 SYNJ1O43426 1573 aa14.34□□□□□ -0.11
PDGFRB-208ENST00000520851 FGD5Q6ZNL6 1462 aa14.28□□□□□ -0.12
PDGFRB-208ENST00000520851 WDR97A6NE52 1622 aa14.27□□□□□ -0.12
PDGFRB-208ENST00000520851 POLA1P09884 1462 aaPredicted RBP14.27□□□□□ -0.12
PDGFRB-208ENST00000520851 IFT140Q96RY7 1462 aa14.26□□□□□ -0.13
PDGFRB-208ENST00000520851 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
PDGFRB-208ENST00000520851 SOGA1O94964 1423 aa14.22□□□□□ -0.13
PDGFRB-208ENST00000520851 PPP4R3CPQ6ZMV5 832 aa14.21□□□□□ -0.13
PDGFRB-208ENST00000520851 TRIM41Q8WV44 630 aa14.19□□□□□ -0.14
PDGFRB-208ENST00000520851 ABCA10Q8WWZ4 1543 aa14.18□□□□□ -0.14
PDGFRB-208ENST00000520851 PBRM1Q86U86 1689 aa14.17□□□□□ -0.14
PDGFRB-208ENST00000520851 EIF4G3O43432 1585 aaKnown RBP14.17□□□□□ -0.14
PDGFRB-208ENST00000520851 RAD54L2Q9Y4B4 1467 aa14.16□□□□□ -0.14
PDGFRB-208ENST00000520851 ABCA5Q8WWZ7 1642 aa14.15□□□□□ -0.14
PDGFRB-208ENST00000520851 KCNA4P22459 653 aa14.13□□□□□ -0.15
PDGFRB-208ENST00000520851 ZNF608Q9ULD9 1512 aaPredicted RBP14.09□□□□□ -0.15
PDGFRB-208ENST00000520851 KIF27Q86VH2 1401 aa14.08□□□□□ -0.15
PDGFRB-208ENST00000520851 GAPVD1Q14C86 1478 aa14.08□□□□□ -0.16
PDGFRB-208ENST00000520851 ERICH3Q5RHP9 1530 aa14.06□□□□□ -0.16
PDGFRB-208ENST00000520851 GRIN2BQ13224 1484 aa14.06□□□□□ -0.16
PDGFRB-208ENST00000520851 CUL7Q14999 1698 aa14.05□□□□□ -0.16
PDGFRB-208ENST00000520851 TDRD9Q8NDG6 1382 aaKnown RBP14.05□□□□□ -0.16
PDGFRB-208ENST00000520851 AQRO60306 1485 aaKnown RBP eCLIP14.05□□□□□ -0.16
PDGFRB-208ENST00000520851 EEA1Q15075 1411 aa14.03□□□□□ -0.16
PDGFRB-208ENST00000520851 MAGI1Q96QZ7 1491 aaPredicted RBP14.02□□□□□ -0.16
PDGFRB-208ENST00000520851 CHD1O14646 1710 aa14.01□□□□□ -0.17
PDGFRB-208ENST00000520851 ADAMTS12P58397 1594 aa13.97□□□□□ -0.17
PDGFRB-208ENST00000520851 SNAPC4Q5SXM2 1469 aa13.96□□□□□ -0.17
PDGFRB-208ENST00000520851 SYNJ2O15056 1496 aa13.93□□□□□ -0.18
PDGFRB-208ENST00000520851 SCAF1Q9H7N4 1312 aaKnown RBP13.93□□□□□ -0.18
PDGFRB-208ENST00000520851 FHAD1B1AJZ9 1412 aa13.93□□□□□ -0.18
PDGFRB-208ENST00000520851 RUSC2Q8N2Y8 1516 aa13.92□□□□□ -0.18
PDGFRB-208ENST00000520851 IGF1RP08069 1367 aa13.91□□□□□ -0.18
PDGFRB-208ENST00000520851 NCBP3Q53F19 620 aaKnown RBP13.89□□□□□ -0.19
PDGFRB-208ENST00000520851 KIF21BO75037 1637 aa13.88□□□□□ -0.19
PDGFRB-208ENST00000520851 CTTNBP2Q8WZ74 1663 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms