RNA–Protein interactions for RNA: ENST00000520451.1

CSMD1-207, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 2

Gene CSMD1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-207ENST00000520451 NISCHQ9Y2I1 1504 aa37.88■■■■□ 3.65
CSMD1-207ENST00000520451 CCDC180Q9P1Z9 1646 aa33.93■■■■□ 3.02
CSMD1-207ENST00000520451 ABCC9O60706 1549 aa33.89■■■■□ 3.02
CSMD1-207ENST00000520451 RB1CC1Q8TDY2 1594 aa32.28■■■□□ 2.76
CSMD1-207ENST00000520451 NACADO15069 1562 aa32.07■■■□□ 2.72
CSMD1-207ENST00000520451 DCAF8L2P0C7V8 631 aa31.97■■■□□ 2.71
CSMD1-207ENST00000520451 DNAJC5BQ9UF47 199 aa31.69■■■□□ 2.66
CSMD1-207ENST00000520451 MYO15BQ96JP2 1530 aa31.65■■■□□ 2.66
CSMD1-207ENST00000520451 PABPN1Q86U42 306 aaKnown RBP eCLIP31.57■■■□□ 2.64
CSMD1-207ENST00000520451 UNC13AQ9UPW8 1703 aa31.5■■■□□ 2.63
CSMD1-207ENST00000520451 ZCCHC6Q5VYS8 1495 aaKnown RBP31.42■■■□□ 2.62
CSMD1-207ENST00000520451 BICRAQ9NZM4 1560 aa31.32■■■□□ 2.6
CSMD1-207ENST00000520451 DCAF1Q9Y4B6 1507 aa31.29■■■□□ 2.6
CSMD1-207ENST00000520451 SCRIBQ14160 1630 aa30.97■■■□□ 2.55
CSMD1-207ENST00000520451 SHROOM4Q9ULL8 1493 aa30.92■■■□□ 2.54
CSMD1-207ENST00000520451 CC2D2AQ9P2K1 1620 aa30.6■■■□□ 2.49
CSMD1-207ENST00000520451 EIF4G1Q04637 1599 aaKnown RBP30.56■■■□□ 2.48
CSMD1-207ENST00000520451 CECR2Q9BXF3 1484 aa30.52■■■□□ 2.48
CSMD1-207ENST00000520451 NCAPD3P42695 1498 aa29.61■■■□□ 2.33
CSMD1-207ENST00000520451 ATAD2BQ9ULI0 1458 aa29.55■■■□□ 2.32
CSMD1-207ENST00000520451 SMARCA4P51532 1647 aa29.53■■■□□ 2.32
CSMD1-207ENST00000520451 SMARCA2P51531 1590 aa29.47■■■□□ 2.31
CSMD1-207ENST00000520451 HMGXB3Q12766 1538 aa29.4■■■□□ 2.3
CSMD1-207ENST00000520451 BAZ1AQ9NRL2 1556 aaPredicted RBP29.4■■■□□ 2.3
CSMD1-207ENST00000520451 ERCC6Q03468 1493 aa29.28■■■□□ 2.28
CSMD1-207ENST00000520451 BAZ1BQ9UIG0 1483 aaKnown RBP29.28■■■□□ 2.28
CSMD1-207ENST00000520451 PEG3Q9GZU2 1588 aa29.23■■■□□ 2.27
CSMD1-207ENST00000520451 MROH2BQ7Z745 1585 aa29.19■■■□□ 2.26
CSMD1-207ENST00000520451 CUX2O14529 1486 aa29.17■■■□□ 2.26
CSMD1-207ENST00000520451 NESP48681 1621 aa29.13■■■□□ 2.25
CSMD1-207ENST00000520451 DNAJC5Q9H3Z4 198 aa29.04■■■□□ 2.24
CSMD1-207ENST00000520451 LAMC3Q9Y6N6 1575 aa28.92■■■□□ 2.22
CSMD1-207ENST00000520451 WIZO95785 1651 aa28.83■■■□□ 2.21
CSMD1-207ENST00000520451 THOC2Q8NI27 1593 aaKnown RBP28.8■■■□□ 2.2
CSMD1-207ENST00000520451 PDS5BQ9NTI5 1447 aa28.78■■■□□ 2.2
CSMD1-207ENST00000520451 KIF21AQ7Z4S6 1674 aa28.74■■■□□ 2.19
CSMD1-207ENST00000520451 CADPSQ9ULU8 1353 aa28.73■■■□□ 2.19
CSMD1-207ENST00000520451 RSF1Q96T23 1441 aaPredicted RBP28.62■■■□□ 2.17
CSMD1-207ENST00000520451 MRC2Q9UBG0 1479 aa28.53■■■□□ 2.16
CSMD1-207ENST00000520451 TOP2AP11388 1531 aaKnown RBP28.49■■■□□ 2.15
CSMD1-207ENST00000520451 WDR62O43379 1518 aa28.44■■■□□ 2.14
CSMD1-207ENST00000520451 CEP164Q9UPV0 1460 aa28.43■■■□□ 2.14
CSMD1-207ENST00000520451 CFTRP13569 1480 aa28.41■■■□□ 2.14
CSMD1-207ENST00000520451 FANCD2Q9BXW9 1451 aa28.41■■■□□ 2.14
CSMD1-207ENST00000520451 CCDC88BA6NC98 1476 aa28.17■■■□□ 2.1
CSMD1-207ENST00000520451 URB2Q14146 1524 aaKnown RBP28.17■■■□□ 2.1
CSMD1-207ENST00000520451 PRDM2Q13029 1718 aa28.1■■■□□ 2.09
CSMD1-207ENST00000520451 TOPBP1Q92547 1522 aa27.87■■■□□ 2.05
CSMD1-207ENST00000520451 IFT140Q96RY7 1462 aa27.86■■■□□ 2.05
CSMD1-207ENST00000520451 OSCARQ8IYS5 282 aa27.85■■■□□ 2.05
CSMD1-207ENST00000520451 TRIM41Q8WV44 630 aa27.84■■■□□ 2.05
CSMD1-207ENST00000520451 ZNF608Q9ULD9 1512 aaPredicted RBP27.81■■■□□ 2.04
CSMD1-207ENST00000520451 ABCC8Q09428 1581 aa27.81■■■□□ 2.04
CSMD1-207ENST00000520451 DNMBPQ6XZF7 1577 aa27.78■■■□□ 2.04
CSMD1-207ENST00000520451 EIF4G3O43432 1585 aaKnown RBP27.65■■■□□ 2.02
CSMD1-207ENST00000520451 TARBP1Q13395 1621 aaKnown RBP27.6■■■□□ 2.01
CSMD1-207ENST00000520451 POLA1P09884 1462 aaPredicted RBP27.6■■■□□ 2.01
CSMD1-207ENST00000520451 AQRO60306 1485 aaKnown RBP eCLIP27.57■■■□□ 2
CSMD1-207ENST00000520451 RAD54L2Q9Y4B4 1467 aa27.51■■□□□ 1.99
CSMD1-207ENST00000520451 SOGA1O94964 1423 aa27.48■■□□□ 1.99
CSMD1-207ENST00000520451 RIMBP3CA6NJZ7 1639 aa27.47■■□□□ 1.99
CSMD1-207ENST00000520451 RIMBP3BA6NNM3 1639 aa27.47■■□□□ 1.99
CSMD1-207ENST00000520451 RIMBP3Q9UFD9 1639 aa27.47■■□□□ 1.99
CSMD1-207ENST00000520451 SUPT5HO00267 1087 aaKnown RBP27.46■■□□□ 1.99
CSMD1-207ENST00000520451 FGD5Q6ZNL6 1462 aa27.44■■□□□ 1.98
CSMD1-207ENST00000520451 CUX1P39880 1505 aa27.43■■□□□ 1.98
CSMD1-207ENST00000520451 TDRD9Q8NDG6 1382 aaKnown RBP27.42■■□□□ 1.98
CSMD1-207ENST00000520451 CHD1O14646 1710 aa27.41■■□□□ 1.98
CSMD1-207ENST00000520451 ARHGEF11O15085 1522 aa27.41■■□□□ 1.98
CSMD1-207ENST00000520451 FBLN2P98095 1184 aa27.39■■□□□ 1.98
CSMD1-207ENST00000520451 WDR97A6NE52 1622 aa27.33■■□□□ 1.97
CSMD1-207ENST00000520451 SNAPC4Q5SXM2 1469 aa27.3■■□□□ 1.96
CSMD1-207ENST00000520451 GRIN2BQ13224 1484 aa27.23■■□□□ 1.95
CSMD1-207ENST00000520451 MAGI1Q96QZ7 1491 aaPredicted RBP27.22■■□□□ 1.95
CSMD1-207ENST00000520451 CYB5RLQ6IPT4 315 aa27.2■■□□□ 1.94
CSMD1-207ENST00000520451 CHMP7Q8WUX9 453 aaPredicted RBP27.2■■□□□ 1.94
CSMD1-207ENST00000520451 GAPVD1Q14C86 1478 aa27.14■■□□□ 1.94
CSMD1-207ENST00000520451 ARAP1Q96P48 1450 aa27.14■■□□□ 1.94
CSMD1-207ENST00000520451 SYNJ2O15056 1496 aa27.13■■□□□ 1.93
CSMD1-207ENST00000520451 ABCA10Q8WWZ4 1543 aa27.13■■□□□ 1.93
CSMD1-207ENST00000520451 SYNJ1O43426 1573 aa27.12■■□□□ 1.93
CSMD1-207ENST00000520451 CLASP1Q7Z460 1538 aa27.11■■□□□ 1.93
CSMD1-207ENST00000520451 PBRM1Q86U86 1689 aa27.11■■□□□ 1.93
CSMD1-207ENST00000520451 ABCA5Q8WWZ7 1642 aa27.08■■□□□ 1.93
CSMD1-207ENST00000520451 WRNQ14191 1432 aaPredicted RBP eCLIP27.05■■□□□ 1.92
CSMD1-207ENST00000520451 TOP2BQ02880 1626 aa27■■□□□ 1.91
CSMD1-207ENST00000520451 BIVM-ERCC5R4GMW8 1640 aa26.99■■□□□ 1.91
CSMD1-207ENST00000520451 TRHP20396 242 aaPredicted RBP26.89■■□□□ 1.9
CSMD1-207ENST00000520451 ADAMTS12P58397 1594 aa26.88■■□□□ 1.89
CSMD1-207ENST00000520451 GRIN2AQ12879 1464 aa26.87■■□□□ 1.89
CSMD1-207ENST00000520451 FHAD1B1AJZ9 1412 aa26.81■■□□□ 1.88
CSMD1-207ENST00000520451 ERICH3Q5RHP9 1530 aa26.79■■□□□ 1.88
CSMD1-207ENST00000520451 NUP160Q12769 1436 aa26.78■■□□□ 1.88
CSMD1-207ENST00000520451 CEP170Q5SW79 1584 aa26.77■■□□□ 1.88
CSMD1-207ENST00000520451 ERCC6L2Q5T890 1561 aa26.71■■□□□ 1.87
CSMD1-207ENST00000520451 SHROOM2Q13796 1616 aa26.63■■□□□ 1.85
CSMD1-207ENST00000520451 PRG4Q92954 1404 aaPredicted RBP26.53■■□□□ 1.84
CSMD1-207ENST00000520451 JPH4Q96JJ6 628 aa26.51■■□□□ 1.83
CSMD1-207ENST00000520451 KIF27Q86VH2 1401 aa26.5■■□□□ 1.83
CSMD1-207ENST00000520451 RUSC2Q8N2Y8 1516 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms