RNA–Protein interactions for RNA: ENST00000520058.1

SREK1-207, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 2

Gene SREK1, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-207ENST00000520058 NISCHQ9Y2I1 1504 aa44.53■■■■■ 4.72
SREK1-207ENST00000520058 CCDC180Q9P1Z9 1646 aa39.74■■■■□ 3.95
SREK1-207ENST00000520058 ABCC9O60706 1549 aa38.77■■■■□ 3.8
SREK1-207ENST00000520058 RB1CC1Q8TDY2 1594 aa37.41■■■■□ 3.58
SREK1-207ENST00000520058 NACADO15069 1562 aa37.33■■■■□ 3.57
SREK1-207ENST00000520058 DCAF8L2P0C7V8 631 aa37.3■■■■□ 3.56
SREK1-207ENST00000520058 ZCCHC6Q5VYS8 1495 aaKnown RBP37.07■■■■□ 3.52
SREK1-207ENST00000520058 MYO15BQ96JP2 1530 aa37.05■■■■□ 3.52
SREK1-207ENST00000520058 DCAF1Q9Y4B6 1507 aa36.88■■■■□ 3.49
SREK1-207ENST00000520058 UNC13AQ9UPW8 1703 aa36.56■■■■□ 3.44
SREK1-207ENST00000520058 PABPN1Q86U42 306 aaKnown RBP eCLIP36.17■■■■□ 3.38
SREK1-207ENST00000520058 SCRIBQ14160 1630 aa36.16■■■■□ 3.38
SREK1-207ENST00000520058 BICRAQ9NZM4 1560 aa36.11■■■■□ 3.37
SREK1-207ENST00000520058 SHROOM4Q9ULL8 1493 aa35.87■■■■□ 3.33
SREK1-207ENST00000520058 DNAJC5BQ9UF47 199 aa35.45■■■■□ 3.27
SREK1-207ENST00000520058 EIF4G1Q04637 1599 aaKnown RBP35.24■■■■□ 3.23
SREK1-207ENST00000520058 CC2D2AQ9P2K1 1620 aa35.11■■■■□ 3.21
SREK1-207ENST00000520058 CECR2Q9BXF3 1484 aa34.86■■■■□ 3.17
SREK1-207ENST00000520058 SMARCA4P51532 1647 aa34.59■■■■□ 3.13
SREK1-207ENST00000520058 BAZ1AQ9NRL2 1556 aaPredicted RBP34.59■■■■□ 3.13
SREK1-207ENST00000520058 SMARCA2P51531 1590 aa34.43■■■■□ 3.1
SREK1-207ENST00000520058 NCAPD3P42695 1498 aa34.37■■■■□ 3.09
SREK1-207ENST00000520058 ATAD2BQ9ULI0 1458 aa34.35■■■■□ 3.09
SREK1-207ENST00000520058 MROH2BQ7Z745 1585 aa34.26■■■■□ 3.07
SREK1-207ENST00000520058 HMGXB3Q12766 1538 aa34.25■■■■□ 3.07
SREK1-207ENST00000520058 PEG3Q9GZU2 1588 aa34.24■■■■□ 3.07
SREK1-207ENST00000520058 BAZ1BQ9UIG0 1483 aaKnown RBP34.15■■■■□ 3.06
SREK1-207ENST00000520058 WIZO95785 1651 aa33.96■■■■□ 3.03
SREK1-207ENST00000520058 RSF1Q96T23 1441 aaPredicted RBP33.86■■■■□ 3.01
SREK1-207ENST00000520058 TOP2AP11388 1531 aaKnown RBP33.61■■■□□ 2.97
SREK1-207ENST00000520058 LAMC3Q9Y6N6 1575 aa33.55■■■□□ 2.96
SREK1-207ENST00000520058 ERCC6Q03468 1493 aa33.52■■■□□ 2.96
SREK1-207ENST00000520058 NESP48681 1621 aa33.49■■■□□ 2.95
SREK1-207ENST00000520058 CADPSQ9ULU8 1353 aa33.37■■■□□ 2.93
SREK1-207ENST00000520058 PDS5BQ9NTI5 1447 aa33.32■■■□□ 2.92
SREK1-207ENST00000520058 KIF21AQ7Z4S6 1674 aa33.23■■■□□ 2.91
SREK1-207ENST00000520058 CCDC88BA6NC98 1476 aa33.16■■■□□ 2.9
SREK1-207ENST00000520058 CUX2O14529 1486 aa33.15■■■□□ 2.9
SREK1-207ENST00000520058 CFTRP13569 1480 aa33.15■■■□□ 2.9
SREK1-207ENST00000520058 PRDM2Q13029 1718 aa33.12■■■□□ 2.89
SREK1-207ENST00000520058 THOC2Q8NI27 1593 aaKnown RBP33.05■■■□□ 2.88
SREK1-207ENST00000520058 SUPT5HO00267 1087 aaKnown RBP33.05■■■□□ 2.88
SREK1-207ENST00000520058 CEP164Q9UPV0 1460 aa33■■■□□ 2.87
SREK1-207ENST00000520058 FANCD2Q9BXW9 1451 aa32.99■■■□□ 2.87
SREK1-207ENST00000520058 MRC2Q9UBG0 1479 aa32.93■■■□□ 2.86
SREK1-207ENST00000520058 WDR62O43379 1518 aa32.82■■■□□ 2.84
SREK1-207ENST00000520058 URB2Q14146 1524 aaKnown RBP32.61■■■□□ 2.81
SREK1-207ENST00000520058 ABCC8Q09428 1581 aa32.58■■■□□ 2.81
SREK1-207ENST00000520058 DNMBPQ6XZF7 1577 aa32.46■■■□□ 2.79
SREK1-207ENST00000520058 TOPBP1Q92547 1522 aa32.46■■■□□ 2.79
SREK1-207ENST00000520058 IFT140Q96RY7 1462 aa32.3■■■□□ 2.76
SREK1-207ENST00000520058 POLA1P09884 1462 aaPredicted RBP32.16■■■□□ 2.74
SREK1-207ENST00000520058 CUX1P39880 1505 aa32.16■■■□□ 2.74
SREK1-207ENST00000520058 TARBP1Q13395 1621 aaKnown RBP32.11■■■□□ 2.73
SREK1-207ENST00000520058 DNAJC5Q9H3Z4 198 aa32.1■■■□□ 2.73
SREK1-207ENST00000520058 FGD5Q6ZNL6 1462 aa32.1■■■□□ 2.73
SREK1-207ENST00000520058 SOGA1O94964 1423 aa32.07■■■□□ 2.72
SREK1-207ENST00000520058 ZNF608Q9ULD9 1512 aaPredicted RBP32.05■■■□□ 2.72
SREK1-207ENST00000520058 EIF4G3O43432 1585 aaKnown RBP32.02■■■□□ 2.72
SREK1-207ENST00000520058 WRNQ14191 1432 aaPredicted RBP eCLIP32■■■□□ 2.71
SREK1-207ENST00000520058 RAD54L2Q9Y4B4 1467 aa31.99■■■□□ 2.71
SREK1-207ENST00000520058 WDR97A6NE52 1622 aa31.97■■■□□ 2.71
SREK1-207ENST00000520058 BIVM-ERCC5R4GMW8 1640 aa31.97■■■□□ 2.71
SREK1-207ENST00000520058 TOP2BQ02880 1626 aa31.96■■■□□ 2.71
SREK1-207ENST00000520058 AQRO60306 1485 aaKnown RBP eCLIP31.9■■■□□ 2.78e-7■□□□□ 8.6
SREK1-207ENST00000520058 SYNJ1O43426 1573 aa31.88■■■□□ 2.69
SREK1-207ENST00000520058 TDRD9Q8NDG6 1382 aaKnown RBP31.84■■■□□ 2.69
SREK1-207ENST00000520058 ABCA10Q8WWZ4 1543 aa31.8■■■□□ 2.68
SREK1-207ENST00000520058 OSCARQ8IYS5 282 aa31.79■■■□□ 2.68
SREK1-207ENST00000520058 PBRM1Q86U86 1689 aa31.73■■■□□ 2.67
SREK1-207ENST00000520058 GRIN2BQ13224 1484 aa31.72■■■□□ 2.67
SREK1-207ENST00000520058 GAPVD1Q14C86 1478 aa31.71■■■□□ 2.67
SREK1-207ENST00000520058 CHD1O14646 1710 aa31.7■■■□□ 2.67
SREK1-207ENST00000520058 ABCA5Q8WWZ7 1642 aa31.67■■■□□ 2.66
SREK1-207ENST00000520058 MAGI1Q96QZ7 1491 aaPredicted RBP31.65■■■□□ 2.66
SREK1-207ENST00000520058 SNAPC4Q5SXM2 1469 aa31.63■■■□□ 2.65
SREK1-207ENST00000520058 FBLN2P98095 1184 aa31.62■■■□□ 2.65
SREK1-207ENST00000520058 CHMP7Q8WUX9 453 aaPredicted RBP31.54■■■□□ 2.64
SREK1-207ENST00000520058 SYNJ2O15056 1496 aa31.51■■■□□ 2.63
SREK1-207ENST00000520058 ERICH3Q5RHP9 1530 aa31.46■■■□□ 2.63
SREK1-207ENST00000520058 KIF27Q86VH2 1401 aa31.39■■■□□ 2.62
SREK1-207ENST00000520058 ADAMTS12P58397 1594 aa31.39■■■□□ 2.61
SREK1-207ENST00000520058 FHAD1B1AJZ9 1412 aa31.34■■■□□ 2.61
SREK1-207ENST00000520058 GRIN2AQ12879 1464 aa31.29■■■□□ 2.6
SREK1-207ENST00000520058 TRIM41Q8WV44 630 aa31.29■■■□□ 2.6
SREK1-207ENST00000520058 RIMBP3CA6NJZ7 1639 aa31.25■■■□□ 2.59
SREK1-207ENST00000520058 RIMBP3BA6NNM3 1639 aa31.25■■■□□ 2.59
SREK1-207ENST00000520058 RIMBP3Q9UFD9 1639 aa31.25■■■□□ 2.59
SREK1-207ENST00000520058 CUL7Q14999 1698 aa31.24■■■□□ 2.59
SREK1-207ENST00000520058 CLASP1Q7Z460 1538 aa31.24■■■□□ 2.59
SREK1-207ENST00000520058 ARHGEF11O15085 1522 aa31.21■■■□□ 2.59
SREK1-207ENST00000520058 IGF1RP08069 1367 aa31.15■■■□□ 2.58
SREK1-207ENST00000520058 NUP160Q12769 1436 aa31.11■■■□□ 2.57
SREK1-207ENST00000520058 CEP170Q5SW79 1584 aa31.1■■■□□ 2.57
SREK1-207ENST00000520058 CARMIL1Q5VZK9 1371 aa31.03■■■□□ 2.56
SREK1-207ENST00000520058 CYB5RLQ6IPT4 315 aa30.94■■■□□ 2.54
SREK1-207ENST00000520058 SHROOM2Q13796 1616 aa30.93■■■□□ 2.54
SREK1-207ENST00000520058 RUSC2Q8N2Y8 1516 aa30.93■■■□□ 2.54
SREK1-207ENST00000520058 ARAP1Q96P48 1450 aa30.9■■■□□ 2.54
SREK1-207ENST00000520058 RAPGEF2Q9Y4G8 1499 aa30.87■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms