RNA–Protein interactions for RNA: ENST00000519219.1

TRIM35-202, Transcript of tripartite motif containing 35, humanhuman

TSL 2

Gene TRIM35, Length 423 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-202ENST00000519219 NISCHQ9Y2I1 1504 aa22.26■■□□□ 1.15
TRIM35-202ENST00000519219 ABCC9O60706 1549 aa20.17■□□□□ 0.82
TRIM35-202ENST00000519219 CCDC180Q9P1Z9 1646 aa20.02■□□□□ 0.8
TRIM35-202ENST00000519219 RB1CC1Q8TDY2 1594 aa19.08■□□□□ 0.65
TRIM35-202ENST00000519219 DNAJC5BQ9UF47 199 aa19.04■□□□□ 0.64
TRIM35-202ENST00000519219 NACADO15069 1562 aa18.91■□□□□ 0.62
TRIM35-202ENST00000519219 UNC13AQ9UPW8 1703 aa18.81■□□□□ 0.6
TRIM35-202ENST00000519219 DCAF8L2P0C7V8 631 aa18.8■□□□□ 0.6
TRIM35-202ENST00000519219 PABPN1Q86U42 306 aaKnown RBP eCLIP18.75■□□□□ 0.59
TRIM35-202ENST00000519219 BICRAQ9NZM4 1560 aa18.63■□□□□ 0.57
TRIM35-202ENST00000519219 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
TRIM35-202ENST00000519219 ZCCHC6Q5VYS8 1495 aaKnown RBP18.44■□□□□ 0.54
TRIM35-202ENST00000519219 DCAF1Q9Y4B6 1507 aa18.33■□□□□ 0.52
TRIM35-202ENST00000519219 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
TRIM35-202ENST00000519219 CC2D2AQ9P2K1 1620 aa18.21■□□□□ 0.51
TRIM35-202ENST00000519219 SHROOM4Q9ULL8 1493 aa18.2■□□□□ 0.5
TRIM35-202ENST00000519219 CECR2Q9BXF3 1484 aa18.14■□□□□ 0.49
TRIM35-202ENST00000519219 EIF4G1Q04637 1599 aaKnown RBP18.13■□□□□ 0.49
TRIM35-202ENST00000519219 DNAJC5Q9H3Z4 198 aa17.54■□□□□ 0.4
TRIM35-202ENST00000519219 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
TRIM35-202ENST00000519219 ATAD2BQ9ULI0 1458 aa17.43■□□□□ 0.38
TRIM35-202ENST00000519219 SMARCA4P51532 1647 aa17.42■□□□□ 0.38
TRIM35-202ENST00000519219 ERCC6Q03468 1493 aa17.36■□□□□ 0.37
TRIM35-202ENST00000519219 CUX2O14529 1486 aa17.34■□□□□ 0.37
TRIM35-202ENST00000519219 SMARCA2P51531 1590 aa17.34■□□□□ 0.37
TRIM35-202ENST00000519219 HMGXB3Q12766 1538 aa17.34■□□□□ 0.37
TRIM35-202ENST00000519219 NESP48681 1621 aa17.33■□□□□ 0.37
TRIM35-202ENST00000519219 BAZ1AQ9NRL2 1556 aaPredicted RBP17.26■□□□□ 0.35
TRIM35-202ENST00000519219 BAZ1BQ9UIG0 1483 aaKnown RBP17.24■□□□□ 0.35
TRIM35-202ENST00000519219 MROH2BQ7Z745 1585 aa17.2■□□□□ 0.34
TRIM35-202ENST00000519219 PEG3Q9GZU2 1588 aa17.2■□□□□ 0.34
TRIM35-202ENST00000519219 THOC2Q8NI27 1593 aaKnown RBP17.16■□□□□ 0.34
TRIM35-202ENST00000519219 KIF21AQ7Z4S6 1674 aa17.12■□□□□ 0.33
TRIM35-202ENST00000519219 LAMC3Q9Y6N6 1575 aa17.09■□□□□ 0.33
TRIM35-202ENST00000519219 WIZO95785 1651 aa17.01■□□□□ 0.31
TRIM35-202ENST00000519219 PDS5BQ9NTI5 1447 aa16.96■□□□□ 0.3
TRIM35-202ENST00000519219 CADPSQ9ULU8 1353 aa16.92■□□□□ 0.3
TRIM35-202ENST00000519219 MRC2Q9UBG0 1479 aa16.87■□□□□ 0.29
TRIM35-202ENST00000519219 WDR62O43379 1518 aa16.86■□□□□ 0.29
TRIM35-202ENST00000519219 CEP164Q9UPV0 1460 aa16.78■□□□□ 0.28
TRIM35-202ENST00000519219 FANCD2Q9BXW9 1451 aa16.77■□□□□ 0.28
TRIM35-202ENST00000519219 RSF1Q96T23 1441 aaPredicted RBP16.77■□□□□ 0.27
TRIM35-202ENST00000519219 TOP2AP11388 1531 aaKnown RBP16.73■□□□□ 0.27
TRIM35-202ENST00000519219 CFTRP13569 1480 aa16.73■□□□□ 0.27
TRIM35-202ENST00000519219 TRIM41Q8WV44 630 aa16.69■□□□□ 0.26
TRIM35-202ENST00000519219 URB2Q14146 1524 aaKnown RBP16.68■□□□□ 0.26
TRIM35-202ENST00000519219 PRDM2Q13029 1718 aa16.63■□□□□ 0.25
TRIM35-202ENST00000519219 CCDC88BA6NC98 1476 aa16.54■□□□□ 0.24
TRIM35-202ENST00000519219 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
TRIM35-202ENST00000519219 OSCARQ8IYS5 282 aa16.5■□□□□ 0.23
TRIM35-202ENST00000519219 TOPBP1Q92547 1522 aa16.45■□□□□ 0.22
TRIM35-202ENST00000519219 IFT140Q96RY7 1462 aa16.43■□□□□ 0.22
TRIM35-202ENST00000519219 RIMBP3CA6NJZ7 1639 aa16.42■□□□□ 0.22
TRIM35-202ENST00000519219 RIMBP3BA6NNM3 1639 aa16.42■□□□□ 0.22
TRIM35-202ENST00000519219 RIMBP3Q9UFD9 1639 aa16.42■□□□□ 0.22
TRIM35-202ENST00000519219 EIF4G3O43432 1585 aaKnown RBP16.39■□□□□ 0.21
TRIM35-202ENST00000519219 DNMBPQ6XZF7 1577 aa16.38■□□□□ 0.21
TRIM35-202ENST00000519219 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
TRIM35-202ENST00000519219 CHD1O14646 1710 aa16.33■□□□□ 0.21
TRIM35-202ENST00000519219 ARHGEF11O15085 1522 aa16.33■□□□□ 0.2
TRIM35-202ENST00000519219 AQRO60306 1485 aaKnown RBP eCLIP16.31■□□□□ 0.24e-6■■■■■ 31
TRIM35-202ENST00000519219 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
TRIM35-202ENST00000519219 POLA1P09884 1462 aaPredicted RBP16.28■□□□□ 0.2
TRIM35-202ENST00000519219 RAD54L2Q9Y4B4 1467 aa16.25■□□□□ 0.19
TRIM35-202ENST00000519219 ARAP1Q96P48 1450 aa16.18■□□□□ 0.18
TRIM35-202ENST00000519219 TDRD9Q8NDG6 1382 aaKnown RBP16.18■□□□□ 0.18
TRIM35-202ENST00000519219 FBLN2P98095 1184 aa16.17■□□□□ 0.18
TRIM35-202ENST00000519219 CYB5RLQ6IPT4 315 aa16.17■□□□□ 0.18
TRIM35-202ENST00000519219 CUX1P39880 1505 aa16.17■□□□□ 0.18
TRIM35-202ENST00000519219 FGD5Q6ZNL6 1462 aa16.16■□□□□ 0.18
TRIM35-202ENST00000519219 SOGA1O94964 1423 aa16.16■□□□□ 0.18
TRIM35-202ENST00000519219 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
TRIM35-202ENST00000519219 WDR97A6NE52 1622 aa16.11■□□□□ 0.17
TRIM35-202ENST00000519219 CLASP1Q7Z460 1538 aa16.09■□□□□ 0.17
TRIM35-202ENST00000519219 PBRM1Q86U86 1689 aa16.05■□□□□ 0.16
TRIM35-202ENST00000519219 GRIN2BQ13224 1484 aa16.03■□□□□ 0.16
TRIM35-202ENST00000519219 MAGI1Q96QZ7 1491 aaPredicted RBP16.03■□□□□ 0.16
TRIM35-202ENST00000519219 SYNJ1O43426 1573 aa16.02■□□□□ 0.16
TRIM35-202ENST00000519219 TRHP20396 242 aaPredicted RBP16■□□□□ 0.15
TRIM35-202ENST00000519219 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
TRIM35-202ENST00000519219 SYNJ2O15056 1496 aa15.99■□□□□ 0.15
TRIM35-202ENST00000519219 ABCA5Q8WWZ7 1642 aa15.99■□□□□ 0.15
TRIM35-202ENST00000519219 GAPVD1Q14C86 1478 aa15.97■□□□□ 0.15
TRIM35-202ENST00000519219 ABCA10Q8WWZ4 1543 aa15.95■□□□□ 0.14
TRIM35-202ENST00000519219 SUPT5HO00267 1087 aaKnown RBP15.94■□□□□ 0.14
TRIM35-202ENST00000519219 ERCC6L2Q5T890 1561 aa15.91■□□□□ 0.14
TRIM35-202ENST00000519219 ADAMTS12P58397 1594 aa15.87■□□□□ 0.13
TRIM35-202ENST00000519219 BIVM-ERCC5R4GMW8 1640 aa15.86■□□□□ 0.13
TRIM35-202ENST00000519219 CEP170Q5SW79 1584 aa15.86■□□□□ 0.13
TRIM35-202ENST00000519219 GRIN2AQ12879 1464 aa15.85■□□□□ 0.13
TRIM35-202ENST00000519219 TOP2BQ02880 1626 aa15.84■□□□□ 0.13
TRIM35-202ENST00000519219 WRNQ14191 1432 aaPredicted RBP eCLIP15.82■□□□□ 0.12
TRIM35-202ENST00000519219 NUP160Q12769 1436 aa15.8■□□□□ 0.12
TRIM35-202ENST00000519219 SHROOM2Q13796 1616 aa15.78■□□□□ 0.12
TRIM35-202ENST00000519219 FHAD1B1AJZ9 1412 aa15.75■□□□□ 0.11
TRIM35-202ENST00000519219 ERICH3Q5RHP9 1530 aa15.73■□□□□ 0.11
TRIM35-202ENST00000519219 KIF13AQ9H1H9 1805 aa15.68■□□□□ 0.1
TRIM35-202ENST00000519219 AEBP2Q6ZN18 517 aaPredicted RBP15.67■□□□□ 0.1
TRIM35-202ENST00000519219 RUSC2Q8N2Y8 1516 aa15.65■□□□□ 0.1
TRIM35-202ENST00000519219 PRG4Q92954 1404 aaPredicted RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms