RNA–Protein interactions for RNA: ENST00000519120.1

MRPS28-204, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 2

Gene MRPS28, Length 403 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-204ENST00000519120 NISCHQ9Y2I1 1504 aa39.31■■■■□ 3.88
MRPS28-204ENST00000519120 CCDC180Q9P1Z9 1646 aa35.22■■■■□ 3.23
MRPS28-204ENST00000519120 ABCC9O60706 1549 aa34.86■■■■□ 3.17
MRPS28-204ENST00000519120 RB1CC1Q8TDY2 1594 aa33.38■■■□□ 2.93
MRPS28-204ENST00000519120 NACADO15069 1562 aa33.24■■■□□ 2.91
MRPS28-204ENST00000519120 MYO15BQ96JP2 1530 aa32.94■■■□□ 2.86
MRPS28-204ENST00000519120 DCAF8L2P0C7V8 631 aa32.9■■■□□ 2.86
MRPS28-204ENST00000519120 ZCCHC6Q5VYS8 1495 aaKnown RBP32.66■■■□□ 2.82
MRPS28-204ENST00000519120 DCAF1Q9Y4B6 1507 aa32.58■■■□□ 2.81
MRPS28-204ENST00000519120 UNC13AQ9UPW8 1703 aa32.54■■■□□ 2.8
MRPS28-204ENST00000519120 DNAJC5BQ9UF47 199 aa32.45■■■□□ 2.79
MRPS28-204ENST00000519120 PABPN1Q86U42 306 aaKnown RBP eCLIP32.44■■■□□ 2.78
MRPS28-204ENST00000519120 BICRAQ9NZM4 1560 aa32.37■■■□□ 2.77
MRPS28-204ENST00000519120 SHROOM4Q9ULL8 1493 aa32.11■■■□□ 2.73
MRPS28-204ENST00000519120 SCRIBQ14160 1630 aa31.98■■■□□ 2.71
MRPS28-204ENST00000519120 EIF4G1Q04637 1599 aaKnown RBP31.56■■■□□ 2.64
MRPS28-204ENST00000519120 CC2D2AQ9P2K1 1620 aa31.53■■■□□ 2.64
MRPS28-204ENST00000519120 CECR2Q9BXF3 1484 aa31.42■■■□□ 2.62
MRPS28-204ENST00000519120 NCAPD3P42695 1498 aa30.69■■■□□ 2.5
MRPS28-204ENST00000519120 SMARCA4P51532 1647 aa30.6■■■□□ 2.49
MRPS28-204ENST00000519120 ATAD2BQ9ULI0 1458 aa30.58■■■□□ 2.49
MRPS28-204ENST00000519120 SMARCA2P51531 1590 aa30.54■■■□□ 2.48
MRPS28-204ENST00000519120 BAZ1AQ9NRL2 1556 aaPredicted RBP30.53■■■□□ 2.48
MRPS28-204ENST00000519120 HMGXB3Q12766 1538 aa30.48■■■□□ 2.47
MRPS28-204ENST00000519120 PEG3Q9GZU2 1588 aa30.38■■■□□ 2.45
MRPS28-204ENST00000519120 BAZ1BQ9UIG0 1483 aaKnown RBP30.29■■■□□ 2.44
MRPS28-204ENST00000519120 MROH2BQ7Z745 1585 aa30.25■■■□□ 2.43
MRPS28-204ENST00000519120 ERCC6Q03468 1493 aa30.11■■■□□ 2.41
MRPS28-204ENST00000519120 CUX2O14529 1486 aa30.06■■■□□ 2.4
MRPS28-204ENST00000519120 NESP48681 1621 aa30■■■□□ 2.39
MRPS28-204ENST00000519120 LAMC3Q9Y6N6 1575 aa29.95■■■□□ 2.39
MRPS28-204ENST00000519120 WIZO95785 1651 aa29.86■■■□□ 2.37
MRPS28-204ENST00000519120 PDS5BQ9NTI5 1447 aa29.75■■■□□ 2.35
MRPS28-204ENST00000519120 RSF1Q96T23 1441 aaPredicted RBP29.73■■■□□ 2.35
MRPS28-204ENST00000519120 CADPSQ9ULU8 1353 aa29.73■■■□□ 2.35
MRPS28-204ENST00000519120 THOC2Q8NI27 1593 aaKnown RBP29.73■■■□□ 2.35
MRPS28-204ENST00000519120 DNAJC5Q9H3Z4 198 aa29.71■■■□□ 2.35
MRPS28-204ENST00000519120 KIF21AQ7Z4S6 1674 aa29.64■■■□□ 2.34
MRPS28-204ENST00000519120 TOP2AP11388 1531 aaKnown RBP29.59■■■□□ 2.33
MRPS28-204ENST00000519120 MRC2Q9UBG0 1479 aa29.47■■■□□ 2.31
MRPS28-204ENST00000519120 CFTRP13569 1480 aa29.46■■■□□ 2.31
MRPS28-204ENST00000519120 WDR62O43379 1518 aa29.4■■■□□ 2.3
MRPS28-204ENST00000519120 CEP164Q9UPV0 1460 aa29.4■■■□□ 2.3
MRPS28-204ENST00000519120 FANCD2Q9BXW9 1451 aa29.37■■■□□ 2.29
MRPS28-204ENST00000519120 CCDC88BA6NC98 1476 aa29.2■■■□□ 2.26
MRPS28-204ENST00000519120 PRDM2Q13029 1718 aa29.15■■■□□ 2.26
MRPS28-204ENST00000519120 URB2Q14146 1524 aaKnown RBP29.1■■■□□ 2.25
MRPS28-204ENST00000519120 ABCC8Q09428 1581 aa28.88■■■□□ 2.21
MRPS28-204ENST00000519120 TOPBP1Q92547 1522 aa28.84■■■□□ 2.21
MRPS28-204ENST00000519120 IFT140Q96RY7 1462 aa28.82■■■□□ 2.2
MRPS28-204ENST00000519120 DNMBPQ6XZF7 1577 aa28.77■■■□□ 2.2
MRPS28-204ENST00000519120 ZNF608Q9ULD9 1512 aaPredicted RBP28.67■■■□□ 2.18
MRPS28-204ENST00000519120 OSCARQ8IYS5 282 aa28.66■■■□□ 2.18
MRPS28-204ENST00000519120 TARBP1Q13395 1621 aaKnown RBP28.58■■■□□ 2.17
MRPS28-204ENST00000519120 EIF4G3O43432 1585 aaKnown RBP28.56■■■□□ 2.16
MRPS28-204ENST00000519120 POLA1P09884 1462 aaPredicted RBP28.56■■■□□ 2.16
MRPS28-204ENST00000519120 SUPT5HO00267 1087 aaKnown RBP28.46■■■□□ 2.15
MRPS28-204ENST00000519120 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.14
MRPS28-204ENST00000519120 SOGA1O94964 1423 aa28.43■■■□□ 2.14
MRPS28-204ENST00000519120 CUX1P39880 1505 aa28.41■■■□□ 2.14
MRPS28-204ENST00000519120 FGD5Q6ZNL6 1462 aa28.4■■■□□ 2.14
MRPS28-204ENST00000519120 WDR97A6NE52 1622 aa28.4■■■□□ 2.14
MRPS28-204ENST00000519120 RAD54L2Q9Y4B4 1467 aa28.4■■■□□ 2.14
MRPS28-204ENST00000519120 TRIM41Q8WV44 630 aa28.39■■■□□ 2.14
MRPS28-204ENST00000519120 TDRD9Q8NDG6 1382 aaKnown RBP28.29■■■□□ 2.12
MRPS28-204ENST00000519120 CHD1O14646 1710 aa28.26■■■□□ 2.12
MRPS28-204ENST00000519120 RIMBP3CA6NJZ7 1639 aa28.25■■■□□ 2.11
MRPS28-204ENST00000519120 RIMBP3BA6NNM3 1639 aa28.25■■■□□ 2.11
MRPS28-204ENST00000519120 RIMBP3Q9UFD9 1639 aa28.25■■■□□ 2.11
MRPS28-204ENST00000519120 ARHGEF11O15085 1522 aa28.21■■■□□ 2.11
MRPS28-204ENST00000519120 GRIN2BQ13224 1484 aa28.19■■■□□ 2.1
MRPS28-204ENST00000519120 SNAPC4Q5SXM2 1469 aa28.18■■■□□ 2.1
MRPS28-204ENST00000519120 MAGI1Q96QZ7 1491 aaPredicted RBP28.18■■■□□ 2.1
MRPS28-204ENST00000519120 ABCA10Q8WWZ4 1543 aa28.14■■■□□ 2.1
MRPS28-204ENST00000519120 FBLN2P98095 1184 aa28.14■■■□□ 2.1
MRPS28-204ENST00000519120 GAPVD1Q14C86 1478 aa28.09■■■□□ 2.09
MRPS28-204ENST00000519120 SYNJ2O15056 1496 aa28.07■■■□□ 2.08
MRPS28-204ENST00000519120 ABCA5Q8WWZ7 1642 aa28.07■■■□□ 2.08
MRPS28-204ENST00000519120 BIVM-ERCC5R4GMW8 1640 aa28.07■■■□□ 2.08
MRPS28-204ENST00000519120 WRNQ14191 1432 aaPredicted RBP eCLIP28.06■■■□□ 2.08
MRPS28-204ENST00000519120 TOP2BQ02880 1626 aa28.06■■■□□ 2.08
MRPS28-204ENST00000519120 PBRM1Q86U86 1689 aa28.04■■■□□ 2.08
MRPS28-204ENST00000519120 CHMP7Q8WUX9 453 aaPredicted RBP28.04■■■□□ 2.08
MRPS28-204ENST00000519120 SYNJ1O43426 1573 aa28.02■■■□□ 2.08
MRPS28-204ENST00000519120 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
MRPS28-204ENST00000519120 ARAP1Q96P48 1450 aa27.94■■■□□ 2.06
MRPS28-204ENST00000519120 CYB5RLQ6IPT4 315 aa27.91■■■□□ 2.06
MRPS28-204ENST00000519120 ADAMTS12P58397 1594 aa27.82■■■□□ 2.04
MRPS28-204ENST00000519120 GRIN2AQ12879 1464 aa27.82■■■□□ 2.04
MRPS28-204ENST00000519120 ERICH3Q5RHP9 1530 aa27.81■■■□□ 2.04
MRPS28-204ENST00000519120 FHAD1B1AJZ9 1412 aa27.78■■■□□ 2.04
MRPS28-204ENST00000519120 NUP160Q12769 1436 aa27.74■■■□□ 2.03
MRPS28-204ENST00000519120 CEP170Q5SW79 1584 aa27.67■■■□□ 2.02
MRPS28-204ENST00000519120 SHROOM2Q13796 1616 aa27.58■■■□□ 2.01
MRPS28-204ENST00000519120 KIF27Q86VH2 1401 aa27.52■■■□□ 2
MRPS28-204ENST00000519120 ERCC6L2Q5T890 1561 aa27.51■■□□□ 1.99
MRPS28-204ENST00000519120 TRHP20396 242 aaPredicted RBP27.5■■□□□ 1.99
MRPS28-204ENST00000519120 IGF1RP08069 1367 aa27.46■■□□□ 1.99
MRPS28-204ENST00000519120 CUL7Q14999 1698 aa27.44■■□□□ 1.98
MRPS28-204ENST00000519120 RUSC2Q8N2Y8 1516 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms