RNA–Protein interactions for RNA: ENST00000519115.5

SDCBP-206, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-206ENST00000519115 NISCHQ9Y2I1 1504 aa18.33■□□□□ 0.52
SDCBP-206ENST00000519115 AEBP2Q6ZN18 517 aaPredicted RBP16.7■□□□□ 0.26
SDCBP-206ENST00000519115 CCDC180Q9P1Z9 1646 aa16.34■□□□□ 0.21
SDCBP-206ENST00000519115 CHIC1Q5VXU3 224 aa16.21■□□□□ 0.19
SDCBP-206ENST00000519115 ABCC9O60706 1549 aa15.96■□□□□ 0.15
SDCBP-206ENST00000519115 RB1CC1Q8TDY2 1594 aa15.34■□□□□ 0.05
SDCBP-206ENST00000519115 NACADO15069 1562 aa15.3■□□□□ 0.04
SDCBP-206ENST00000519115 DCAF8L2P0C7V8 631 aa15.3■□□□□ 0.04
SDCBP-206ENST00000519115 ZCCHC6Q5VYS8 1495 aaKnown RBP15.28■□□□□ 0.04
SDCBP-206ENST00000519115 MYO15BQ96JP2 1530 aa15.17■□□□□ 0.02
SDCBP-206ENST00000519115 DCAF1Q9Y4B6 1507 aa15.13■□□□□ 0.01
SDCBP-206ENST00000519115 UNC13AQ9UPW8 1703 aa15.09■□□□□ 0.01
SDCBP-206ENST00000519115 SCRIBQ14160 1630 aa14.94□□□□□ -0.02
SDCBP-206ENST00000519115 BICRAQ9NZM4 1560 aa14.9□□□□□ -0.02
SDCBP-206ENST00000519115 PABPN1Q86U42 306 aaKnown RBP eCLIP14.88□□□□□ -0.03
SDCBP-206ENST00000519115 SHROOM4Q9ULL8 1493 aa14.67□□□□□ -0.06
SDCBP-206ENST00000519115 DNAJC5BQ9UF47 199 aa14.59□□□□□ -0.07
SDCBP-206ENST00000519115 EIF4G1Q04637 1599 aaKnown RBP14.49□□□□□ -0.09
SDCBP-206ENST00000519115 CC2D2AQ9P2K1 1620 aa14.44□□□□□ -0.1
SDCBP-206ENST00000519115 SENP3Q9H4L4 574 aaPredicted RBP14.32□□□□□ -0.12
SDCBP-206ENST00000519115 CECR2Q9BXF3 1484 aa14.31□□□□□ -0.12
SDCBP-206ENST00000519115 PHF23Q9BUL5 403 aaPredicted RBP14.26□□□□□ -0.13
SDCBP-206ENST00000519115 SMARCA4P51532 1647 aa14.26□□□□□ -0.13
SDCBP-206ENST00000519115 BAZ1AQ9NRL2 1556 aaPredicted RBP14.21□□□□□ -0.14
SDCBP-206ENST00000519115 DNAJC5Q9H3Z4 198 aa14.18□□□□□ -0.14
SDCBP-206ENST00000519115 MROH2BQ7Z745 1585 aa14.15□□□□□ -0.14
SDCBP-206ENST00000519115 ATAD2BQ9ULI0 1458 aa14.13□□□□□ -0.15
SDCBP-206ENST00000519115 SMARCA2P51531 1590 aa14.13□□□□□ -0.15
SDCBP-206ENST00000519115 NCAPD3P42695 1498 aa14.09□□□□□ -0.15
SDCBP-206ENST00000519115 PEG3Q9GZU2 1588 aa14.08□□□□□ -0.16
SDCBP-206ENST00000519115 HMGXB3Q12766 1538 aa14.07□□□□□ -0.16
SDCBP-206ENST00000519115 BAZ1BQ9UIG0 1483 aaKnown RBP14.04□□□□□ -0.16
SDCBP-206ENST00000519115 WIZO95785 1651 aa14.04□□□□□ -0.16
SDCBP-206ENST00000519115 RSF1Q96T23 1441 aaPredicted RBP13.96□□□□□ -0.18
SDCBP-206ENST00000519115 TOP2AP11388 1531 aaKnown RBP13.85□□□□□ -0.19
SDCBP-206ENST00000519115 NESP48681 1621 aa13.82□□□□□ -0.2
SDCBP-206ENST00000519115 LAMC3Q9Y6N6 1575 aa13.76□□□□□ -0.21
SDCBP-206ENST00000519115 ERCC6Q03468 1493 aa13.74□□□□□ -0.21
SDCBP-206ENST00000519115 KIF21AQ7Z4S6 1674 aa13.71□□□□□ -0.21
SDCBP-206ENST00000519115 CADPSQ9ULU8 1353 aa13.68□□□□□ -0.22
SDCBP-206ENST00000519115 CCDC88BA6NC98 1476 aa13.67□□□□□ -0.22
SDCBP-206ENST00000519115 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
SDCBP-206ENST00000519115 PRDM2Q13029 1718 aa13.64□□□□□ -0.23
SDCBP-206ENST00000519115 PDS5BQ9NTI5 1447 aa13.63□□□□□ -0.23
SDCBP-206ENST00000519115 THOC2Q8NI27 1593 aaKnown RBP13.62□□□□□ -0.23
SDCBP-206ENST00000519115 CFTRP13569 1480 aa13.61□□□□□ -0.23
SDCBP-206ENST00000519115 FANCD2Q9BXW9 1451 aa13.57□□□□□ -0.24
SDCBP-206ENST00000519115 CUX2O14529 1486 aa13.56□□□□□ -0.24
SDCBP-206ENST00000519115 CEP164Q9UPV0 1460 aa13.55□□□□□ -0.24
SDCBP-206ENST00000519115 MRC2Q9UBG0 1479 aa13.53□□□□□ -0.24
SDCBP-206ENST00000519115 WDR62O43379 1518 aa13.49□□□□□ -0.25
SDCBP-206ENST00000519115 URB2Q14146 1524 aaKnown RBP13.45□□□□□ -0.26
SDCBP-206ENST00000519115 TOPBP1Q92547 1522 aa13.37□□□□□ -0.27
SDCBP-206ENST00000519115 DNMBPQ6XZF7 1577 aa13.36□□□□□ -0.27
SDCBP-206ENST00000519115 FOXD1Q16676 465 aa13.33□□□□□ -0.28
SDCBP-206ENST00000519115 ABCC8Q09428 1581 aa13.3□□□□□ -0.28
SDCBP-206ENST00000519115 CUX1P39880 1505 aa13.29□□□□□ -0.28
SDCBP-206ENST00000519115 POLA1P09884 1462 aaPredicted RBP13.24□□□□□ -0.29
SDCBP-206ENST00000519115 IFT140Q96RY7 1462 aa13.24□□□□□ -0.29
SDCBP-206ENST00000519115 TARBP1Q13395 1621 aaKnown RBP13.23□□□□□ -0.29
SDCBP-206ENST00000519115 ZNF608Q9ULD9 1512 aaPredicted RBP13.23□□□□□ -0.29
SDCBP-206ENST00000519115 FGD5Q6ZNL6 1462 aa13.23□□□□□ -0.29
SDCBP-206ENST00000519115 EIF4G3O43432 1585 aaKnown RBP13.2□□□□□ -0.3
SDCBP-206ENST00000519115 RAD54L2Q9Y4B4 1467 aa13.2□□□□□ -0.3
SDCBP-206ENST00000519115 SYNJ1O43426 1573 aa13.19□□□□□ -0.3
SDCBP-206ENST00000519115 BIVM-ERCC5R4GMW8 1640 aa13.18□□□□□ -0.3
SDCBP-206ENST00000519115 WRNQ14191 1432 aaPredicted RBP eCLIP13.17□□□□□ -0.3
SDCBP-206ENST00000519115 WDR97A6NE52 1622 aa13.17□□□□□ -0.3
SDCBP-206ENST00000519115 SOGA1O94964 1423 aa13.16□□□□□ -0.3
SDCBP-206ENST00000519115 TOP2BQ02880 1626 aa13.16□□□□□ -0.3
SDCBP-206ENST00000519115 AQRO60306 1485 aaKnown RBP eCLIP13.13□□□□□ -0.31
SDCBP-206ENST00000519115 PLPPR3Q6T4P5 718 aa13.12□□□□□ -0.31
SDCBP-206ENST00000519115 TDRD9Q8NDG6 1382 aaKnown RBP13.1□□□□□ -0.31
SDCBP-206ENST00000519115 PBRM1Q86U86 1689 aa13.08□□□□□ -0.31
SDCBP-206ENST00000519115 ABCA10Q8WWZ4 1543 aa13.08□□□□□ -0.32
SDCBP-206ENST00000519115 CHD1O14646 1710 aa13.08□□□□□ -0.32
SDCBP-206ENST00000519115 ABCA5Q8WWZ7 1642 aa13.06□□□□□ -0.32
SDCBP-206ENST00000519115 GAPVD1Q14C86 1478 aa13.03□□□□□ -0.32
SDCBP-206ENST00000519115 SNAPC4Q5SXM2 1469 aa13.03□□□□□ -0.32
SDCBP-206ENST00000519115 GRIN2BQ13224 1484 aa13.02□□□□□ -0.33
SDCBP-206ENST00000519115 MAGI1Q96QZ7 1491 aaPredicted RBP12.98□□□□□ -0.33
SDCBP-206ENST00000519115 FBLN2P98095 1184 aa12.96□□□□□ -0.33
SDCBP-206ENST00000519115 OSCARQ8IYS5 282 aa12.96□□□□□ -0.33
SDCBP-206ENST00000519115 ADAMTS12P58397 1594 aa12.94□□□□□ -0.34
SDCBP-206ENST00000519115 SYNJ2O15056 1496 aa12.93□□□□□ -0.34
SDCBP-206ENST00000519115 ERICH3Q5RHP9 1530 aa12.92□□□□□ -0.34
SDCBP-206ENST00000519115 CHMP7Q8WUX9 453 aaPredicted RBP12.9□□□□□ -0.34
SDCBP-206ENST00000519115 KIF27Q86VH2 1401 aa12.88□□□□□ -0.35
SDCBP-206ENST00000519115 CLASP1Q7Z460 1538 aa12.87□□□□□ -0.35
SDCBP-206ENST00000519115 GRIN2AQ12879 1464 aa12.86□□□□□ -0.35
SDCBP-206ENST00000519115 FHAD1B1AJZ9 1412 aa12.86□□□□□ -0.35
SDCBP-206ENST00000519115 RIMBP3CA6NJZ7 1639 aa12.85□□□□□ -0.35
SDCBP-206ENST00000519115 RIMBP3BA6NNM3 1639 aa12.85□□□□□ -0.35
SDCBP-206ENST00000519115 RIMBP3Q9UFD9 1639 aa12.85□□□□□ -0.35
SDCBP-206ENST00000519115 CUL7Q14999 1698 aa12.84□□□□□ -0.35
SDCBP-206ENST00000519115 TRIM41Q8WV44 630 aa12.84□□□□□ -0.35
SDCBP-206ENST00000519115 CEP170Q5SW79 1584 aa12.83□□□□□ -0.36
SDCBP-206ENST00000519115 ARHGEF11O15085 1522 aa12.83□□□□□ -0.36
SDCBP-206ENST00000519115 RUSC2Q8N2Y8 1516 aa12.81□□□□□ -0.36
SDCBP-206ENST00000519115 IGF1RP08069 1367 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms