RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 NISCHQ9Y2I1 1504 aa73.41■■■■■ 9.34
SYNPO-203ENST00000518872 CCDC180Q9P1Z9 1646 aa65.64■■■■■ 8.1
SYNPO-203ENST00000518872 ABCC9O60706 1549 aa64.6■■■■■ 7.93
SYNPO-203ENST00000518872 RB1CC1Q8TDY2 1594 aa62.01■■■■■ 7.52
SYNPO-203ENST00000518872 NACADO15069 1562 aa61.82■■■■■ 7.49
SYNPO-203ENST00000518872 MYO15BQ96JP2 1530 aa61.35■■■■■ 7.41
SYNPO-203ENST00000518872 DCAF8L2P0C7V8 631 aa61.3■■■■■ 7.4
SYNPO-203ENST00000518872 ZCCHC6Q5VYS8 1495 aaKnown RBP61.05■■■■■ 7.36
SYNPO-203ENST00000518872 DCAF1Q9Y4B6 1507 aa60.82■■■■■ 7.33
SYNPO-203ENST00000518872 UNC13AQ9UPW8 1703 aa60.63■■■■■ 7.3
SYNPO-203ENST00000518872 PABPN1Q86U42 306 aaKnown RBP eCLIP60.19■■■■■ 7.23
SYNPO-203ENST00000518872 BICRAQ9NZM4 1560 aa60.16■■■■■ 7.22
SYNPO-203ENST00000518872 DNAJC5BQ9UF47 199 aa59.85■■■■■ 7.17
SYNPO-203ENST00000518872 SCRIBQ14160 1630 aa59.65■■■■■ 7.14
SYNPO-203ENST00000518872 SHROOM4Q9ULL8 1493 aa59.6■■■■■ 7.13
SYNPO-203ENST00000518872 EIF4G1Q04637 1599 aaKnown RBP58.61■■■■■ 6.97
SYNPO-203ENST00000518872 CC2D2AQ9P2K1 1620 aa58.5■■■■■ 6.96
SYNPO-203ENST00000518872 CECR2Q9BXF3 1484 aa58.17■■■■■ 6.9
SYNPO-203ENST00000518872 SMARCA4P51532 1647 aa57.1■■■■■ 6.73
SYNPO-203ENST00000518872 NCAPD3P42695 1498 aa57.04■■■■■ 6.72
SYNPO-203ENST00000518872 BAZ1AQ9NRL2 1556 aaPredicted RBP56.96■■■■■ 6.71
SYNPO-203ENST00000518872 ATAD2BQ9ULI0 1458 aa56.94■■■■■ 6.71
SYNPO-203ENST00000518872 SMARCA2P51531 1590 aa56.88■■■■■ 6.7
SYNPO-203ENST00000518872 HMGXB3Q12766 1538 aa56.74■■■■■ 6.67
SYNPO-203ENST00000518872 PEG3Q9GZU2 1588 aa56.65■■■■■ 6.66
SYNPO-203ENST00000518872 MROH2BQ7Z745 1585 aa56.52■■■■■ 6.64
SYNPO-203ENST00000518872 BAZ1BQ9UIG0 1483 aaKnown RBP56.4■■■■■ 6.62
SYNPO-203ENST00000518872 WIZO95785 1651 aa55.88■■■■■ 6.54
SYNPO-203ENST00000518872 NESP48681 1621 aa55.74■■■■■ 6.51
SYNPO-203ENST00000518872 ERCC6Q03468 1493 aa55.74■■■■■ 6.51
SYNPO-203ENST00000518872 RSF1Q96T23 1441 aaPredicted RBP55.65■■■■■ 6.5
SYNPO-203ENST00000518872 LAMC3Q9Y6N6 1575 aa55.65■■■■■ 6.5
SYNPO-203ENST00000518872 CUX2O14529 1486 aa55.51■■■■■ 6.48
SYNPO-203ENST00000518872 TOP2AP11388 1531 aaKnown RBP55.31■■■■■ 6.44
SYNPO-203ENST00000518872 CADPSQ9ULU8 1353 aa55.29■■■■■ 6.44
SYNPO-203ENST00000518872 PDS5BQ9NTI5 1447 aa55.23■■■■■ 6.43
SYNPO-203ENST00000518872 THOC2Q8NI27 1593 aaKnown RBP55.14■■■■■ 6.42
SYNPO-203ENST00000518872 KIF21AQ7Z4S6 1674 aa55.14■■■■■ 6.42
SYNPO-203ENST00000518872 CFTRP13569 1480 aa54.87■■■■■ 6.37
SYNPO-203ENST00000518872 MRC2Q9UBG0 1479 aa54.7■■■■■ 6.35
SYNPO-203ENST00000518872 FANCD2Q9BXW9 1451 aa54.64■■■■■ 6.34
SYNPO-203ENST00000518872 CEP164Q9UPV0 1460 aa54.64■■■■■ 6.34
SYNPO-203ENST00000518872 CCDC88BA6NC98 1476 aa54.6■■■■■ 6.33
SYNPO-203ENST00000518872 WDR62O43379 1518 aa54.6■■■■■ 6.33
SYNPO-203ENST00000518872 PRDM2Q13029 1718 aa54.49■■■■■ 6.31
SYNPO-203ENST00000518872 DNAJC5Q9H3Z4 198 aa54.45■■■■■ 6.31
SYNPO-203ENST00000518872 URB2Q14146 1524 aaKnown RBP54.14■■■■■ 6.26
SYNPO-203ENST00000518872 ABCC8Q09428 1581 aa53.74■■■■■ 6.19
SYNPO-203ENST00000518872 TOPBP1Q92547 1522 aa53.72■■■■■ 6.19
SYNPO-203ENST00000518872 DNMBPQ6XZF7 1577 aa53.63■■■■■ 6.18
SYNPO-203ENST00000518872 SUPT5HO00267 1087 aaKnown RBP53.57■■■■■ 6.17
SYNPO-203ENST00000518872 IFT140Q96RY7 1462 aa53.54■■■■■ 6.16
SYNPO-203ENST00000518872 ZNF608Q9ULD9 1512 aaPredicted RBP53.29■■■■■ 6.12
SYNPO-203ENST00000518872 POLA1P09884 1462 aaPredicted RBP53.22■■■■■ 6.11
SYNPO-203ENST00000518872 TARBP1Q13395 1621 aaKnown RBP53.22■■■■■ 6.11
SYNPO-203ENST00000518872 EIF4G3O43432 1585 aaKnown RBP53.11■■■■■ 6.09
SYNPO-203ENST00000518872 CUX1P39880 1505 aa53.07■■■■■ 6.09
SYNPO-203ENST00000518872 OSCARQ8IYS5 282 aa52.99■■■■■ 6.07
SYNPO-203ENST00000518872 FGD5Q6ZNL6 1462 aa52.98■■■■■ 6.07
SYNPO-203ENST00000518872 SOGA1O94964 1423 aa52.94■■■■■ 6.07
SYNPO-203ENST00000518872 RAD54L2Q9Y4B4 1467 aa52.92■■■■■ 6.06
SYNPO-203ENST00000518872 AQRO60306 1485 aaKnown RBP eCLIP52.89■■■■■ 6.06
SYNPO-203ENST00000518872 WDR97A6NE52 1622 aa52.86■■■■■ 6.05
SYNPO-203ENST00000518872 TDRD9Q8NDG6 1382 aaKnown RBP52.68■■■■■ 6.02
SYNPO-203ENST00000518872 CHD1O14646 1710 aa52.57■■■■■ 6.01
SYNPO-203ENST00000518872 BIVM-ERCC5R4GMW8 1640 aa52.52■■■■■ 6
SYNPO-203ENST00000518872 TOP2BQ02880 1626 aa52.5■■■■■ 5.99
SYNPO-203ENST00000518872 ABCA10Q8WWZ4 1543 aa52.5■■■■■ 5.99
SYNPO-203ENST00000518872 WRNQ14191 1432 aaPredicted RBP eCLIP52.49■■■■■ 5.99
SYNPO-203ENST00000518872 GRIN2BQ13224 1484 aa52.44■■■■■ 5.99
SYNPO-203ENST00000518872 SNAPC4Q5SXM2 1469 aa52.42■■■■■ 5.98
SYNPO-203ENST00000518872 MAGI1Q96QZ7 1491 aaPredicted RBP52.41■■■■■ 5.98
SYNPO-203ENST00000518872 SYNJ1O43426 1573 aa52.39■■■■■ 5.98
SYNPO-203ENST00000518872 ABCA5Q8WWZ7 1642 aa52.36■■■■■ 5.97
SYNPO-203ENST00000518872 GAPVD1Q14C86 1478 aa52.35■■■■■ 5.97
SYNPO-203ENST00000518872 PBRM1Q86U86 1689 aa52.32■■■■■ 5.97
SYNPO-203ENST00000518872 FBLN2P98095 1184 aa52.26■■■■■ 5.96
SYNPO-203ENST00000518872 RIMBP3CA6NJZ7 1639 aa52.26■■■■■ 5.96
SYNPO-203ENST00000518872 RIMBP3BA6NNM3 1639 aa52.26■■■■■ 5.96
SYNPO-203ENST00000518872 RIMBP3Q9UFD9 1639 aa52.26■■■■■ 5.96
SYNPO-203ENST00000518872 TRIM41Q8WV44 630 aa52.21■■■■■ 5.95
SYNPO-203ENST00000518872 SYNJ2O15056 1496 aa52.19■■■■■ 5.95
SYNPO-203ENST00000518872 ARHGEF11O15085 1522 aa52.19■■■■■ 5.94
SYNPO-203ENST00000518872 CHMP7Q8WUX9 453 aaPredicted RBP52.11■■■■■ 5.93
SYNPO-203ENST00000518872 CLASP1Q7Z460 1538 aa52.02■■■■■ 5.92
SYNPO-203ENST00000518872 ADAMTS12P58397 1594 aa51.87■■■■■ 5.89
SYNPO-203ENST00000518872 ERICH3Q5RHP9 1530 aa51.87■■■■■ 5.89
SYNPO-203ENST00000518872 GRIN2AQ12879 1464 aa51.78■■■■■ 5.88
SYNPO-203ENST00000518872 FHAD1B1AJZ9 1412 aa51.74■■■■■ 5.87
SYNPO-203ENST00000518872 ARAP1Q96P48 1450 aa51.72■■■■■ 5.87
SYNPO-203ENST00000518872 CYB5RLQ6IPT4 315 aa51.61■■■■■ 5.85
SYNPO-203ENST00000518872 NUP160Q12769 1436 aa51.61■■■■■ 5.85
SYNPO-203ENST00000518872 CEP170Q5SW79 1584 aa51.53■■■■■ 5.84
SYNPO-203ENST00000518872 KIF27Q86VH2 1401 aa51.45■■■■■ 5.83
SYNPO-203ENST00000518872 SHROOM2Q13796 1616 aa51.33■■■■■ 5.81
SYNPO-203ENST00000518872 IGF1RP08069 1367 aa51.31■■■■■ 5.8
SYNPO-203ENST00000518872 CUL7Q14999 1698 aa51.28■■■■■ 5.8
SYNPO-203ENST00000518872 ERCC6L2Q5T890 1561 aa51.16■■■■■ 5.78
SYNPO-203ENST00000518872 RUSC2Q8N2Y8 1516 aa51.13■■■■■ 5.77
SYNPO-203ENST00000518872 CARMIL1Q5VZK9 1371 aa50.97■■■■■ 5.75
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms