RNA–Protein interactions for RNA: ENST00000518840.5

R3HCC1-204, Transcript of R3H domain and coiled-coil containing 1, humanhuman

APPRIS ALT2 TSL 3

Gene R3HCC1, Length 781 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-204ENST00000518840 NISCHQ9Y2I1 1504 aa46.74■■■■■ 5.07
R3HCC1-204ENST00000518840 ABCC9O60706 1549 aa41.85■■■■■ 4.29
R3HCC1-204ENST00000518840 CCDC180Q9P1Z9 1646 aa41.82■■■■■ 4.29
R3HCC1-204ENST00000518840 RB1CC1Q8TDY2 1594 aa39.8■■■■□ 3.96
R3HCC1-204ENST00000518840 NACADO15069 1562 aa39.55■■■■□ 3.92
R3HCC1-204ENST00000518840 DCAF8L2P0C7V8 631 aa39.42■■■■□ 3.9
R3HCC1-204ENST00000518840 DNAJC5BQ9UF47 199 aa39.28■■■■□ 3.88
R3HCC1-204ENST00000518840 MYO15BQ96JP2 1530 aa39.04■■■■□ 3.84
R3HCC1-204ENST00000518840 PABPN1Q86U42 306 aaKnown RBP eCLIP39.02■■■■□ 3.84
R3HCC1-204ENST00000518840 UNC13AQ9UPW8 1703 aa38.88■■■■□ 3.81
R3HCC1-204ENST00000518840 ZCCHC6Q5VYS8 1495 aaKnown RBP38.76■■■■□ 3.8
R3HCC1-204ENST00000518840 BICRAQ9NZM4 1560 aa38.71■■■■□ 3.79
R3HCC1-204ENST00000518840 DCAF1Q9Y4B6 1507 aa38.58■■■■□ 3.77
R3HCC1-204ENST00000518840 SCRIBQ14160 1630 aa38.18■■■■□ 3.7
R3HCC1-204ENST00000518840 SHROOM4Q9ULL8 1493 aa38.11■■■■□ 3.69
R3HCC1-204ENST00000518840 CC2D2AQ9P2K1 1620 aa37.78■■■■□ 3.64
R3HCC1-204ENST00000518840 EIF4G1Q04637 1599 aaKnown RBP37.72■■■■□ 3.63
R3HCC1-204ENST00000518840 CECR2Q9BXF3 1484 aa37.68■■■■□ 3.62
R3HCC1-204ENST00000518840 NCAPD3P42695 1498 aa36.57■■■■□ 3.45
R3HCC1-204ENST00000518840 ATAD2BQ9ULI0 1458 aa36.48■■■■□ 3.43
R3HCC1-204ENST00000518840 SMARCA4P51532 1647 aa36.41■■■■□ 3.42
R3HCC1-204ENST00000518840 SMARCA2P51531 1590 aa36.32■■■■□ 3.4
R3HCC1-204ENST00000518840 HMGXB3Q12766 1538 aa36.26■■■■□ 3.4
R3HCC1-204ENST00000518840 BAZ1AQ9NRL2 1556 aaPredicted RBP36.23■■■■□ 3.39
R3HCC1-204ENST00000518840 BAZ1BQ9UIG0 1483 aaKnown RBP36.09■■■■□ 3.37
R3HCC1-204ENST00000518840 ERCC6Q03468 1493 aa36.07■■■■□ 3.37
R3HCC1-204ENST00000518840 PEG3Q9GZU2 1588 aa36.06■■■■□ 3.36
R3HCC1-204ENST00000518840 MROH2BQ7Z745 1585 aa36.04■■■■□ 3.36
R3HCC1-204ENST00000518840 NESP48681 1621 aa36■■■■□ 3.35
R3HCC1-204ENST00000518840 CUX2O14529 1486 aa35.99■■■■□ 3.35
R3HCC1-204ENST00000518840 DNAJC5Q9H3Z4 198 aa35.94■■■■□ 3.34
R3HCC1-204ENST00000518840 LAMC3Q9Y6N6 1575 aa35.68■■■■□ 3.3
R3HCC1-204ENST00000518840 WIZO95785 1651 aa35.58■■■■□ 3.29
R3HCC1-204ENST00000518840 THOC2Q8NI27 1593 aaKnown RBP35.56■■■■□ 3.28
R3HCC1-204ENST00000518840 PDS5BQ9NTI5 1447 aa35.49■■■■□ 3.27
R3HCC1-204ENST00000518840 CADPSQ9ULU8 1353 aa35.46■■■■□ 3.27
R3HCC1-204ENST00000518840 KIF21AQ7Z4S6 1674 aa35.45■■■■□ 3.27
R3HCC1-204ENST00000518840 RSF1Q96T23 1441 aaPredicted RBP35.33■■■■□ 3.25
R3HCC1-204ENST00000518840 MRC2Q9UBG0 1479 aa35.19■■■■□ 3.22
R3HCC1-204ENST00000518840 TOP2AP11388 1531 aaKnown RBP35.12■■■■□ 3.21
R3HCC1-204ENST00000518840 WDR62O43379 1518 aa35.11■■■■□ 3.21
R3HCC1-204ENST00000518840 CFTRP13569 1480 aa35.07■■■■□ 3.2
R3HCC1-204ENST00000518840 FANCD2Q9BXW9 1451 aa35.05■■■■□ 3.2
R3HCC1-204ENST00000518840 CEP164Q9UPV0 1460 aa35.05■■■■□ 3.2
R3HCC1-204ENST00000518840 URB2Q14146 1524 aaKnown RBP34.78■■■■□ 3.16
R3HCC1-204ENST00000518840 CCDC88BA6NC98 1476 aa34.77■■■■□ 3.16
R3HCC1-204ENST00000518840 PRDM2Q13029 1718 aa34.59■■■■□ 3.13
R3HCC1-204ENST00000518840 TOPBP1Q92547 1522 aa34.4■■■■□ 3.1
R3HCC1-204ENST00000518840 TRIM41Q8WV44 630 aa34.39■■■■□ 3.1
R3HCC1-204ENST00000518840 OSCARQ8IYS5 282 aa34.38■■■■□ 3.09
R3HCC1-204ENST00000518840 ZNF608Q9ULD9 1512 aaPredicted RBP34.35■■■■□ 3.09
R3HCC1-204ENST00000518840 IFT140Q96RY7 1462 aa34.35■■■■□ 3.09
R3HCC1-204ENST00000518840 ABCC8Q09428 1581 aa34.27■■■■□ 3.08
R3HCC1-204ENST00000518840 DNMBPQ6XZF7 1577 aa34.24■■■■□ 3.07
R3HCC1-204ENST00000518840 EIF4G3O43432 1585 aaKnown RBP34.1■■■■□ 3.05
R3HCC1-204ENST00000518840 TARBP1Q13395 1621 aaKnown RBP34.08■■■■□ 3.05
R3HCC1-204ENST00000518840 POLA1P09884 1462 aaPredicted RBP34.06■■■■□ 3.04
R3HCC1-204ENST00000518840 AQRO60306 1485 aaKnown RBP eCLIP34.04■■■■□ 3.04
R3HCC1-204ENST00000518840 RAD54L2Q9Y4B4 1467 aa33.96■■■■□ 3.03
R3HCC1-204ENST00000518840 RIMBP3CA6NJZ7 1639 aa33.91■■■■□ 3.02
R3HCC1-204ENST00000518840 RIMBP3BA6NNM3 1639 aa33.91■■■■□ 3.02
R3HCC1-204ENST00000518840 RIMBP3Q9UFD9 1639 aa33.91■■■■□ 3.02
R3HCC1-204ENST00000518840 SOGA1O94964 1423 aa33.9■■■■□ 3.02
R3HCC1-204ENST00000518840 TDRD9Q8NDG6 1382 aaKnown RBP33.85■■■■□ 3.01
R3HCC1-204ENST00000518840 CUX1P39880 1505 aa33.85■■■■□ 3.01
R3HCC1-204ENST00000518840 FGD5Q6ZNL6 1462 aa33.85■■■■□ 3.01
R3HCC1-204ENST00000518840 ARHGEF11O15085 1522 aa33.84■■■■□ 3.01
R3HCC1-204ENST00000518840 SUPT5HO00267 1087 aaKnown RBP33.82■■■■□ 3
R3HCC1-204ENST00000518840 CHD1O14646 1710 aa33.8■■■■□ 3
R3HCC1-204ENST00000518840 FBLN2P98095 1184 aa33.77■■■■□ 3
R3HCC1-204ENST00000518840 SNAPC4Q5SXM2 1469 aa33.68■■■□□ 2.98
R3HCC1-204ENST00000518840 WDR97A6NE52 1622 aa33.66■■■□□ 2.98
R3HCC1-204ENST00000518840 CYB5RLQ6IPT4 315 aa33.6■■■□□ 2.97
R3HCC1-204ENST00000518840 GRIN2BQ13224 1484 aa33.57■■■□□ 2.97
R3HCC1-204ENST00000518840 MAGI1Q96QZ7 1491 aaPredicted RBP33.56■■■□□ 2.96
R3HCC1-204ENST00000518840 ARAP1Q96P48 1450 aa33.54■■■□□ 2.96
R3HCC1-204ENST00000518840 CHMP7Q8WUX9 453 aaPredicted RBP33.53■■■□□ 2.96
R3HCC1-204ENST00000518840 GAPVD1Q14C86 1478 aa33.48■■■□□ 2.95
R3HCC1-204ENST00000518840 CLASP1Q7Z460 1538 aa33.48■■■□□ 2.95
R3HCC1-204ENST00000518840 SYNJ2O15056 1496 aa33.46■■■□□ 2.95
R3HCC1-204ENST00000518840 ABCA10Q8WWZ4 1543 aa33.46■■■□□ 2.95
R3HCC1-204ENST00000518840 SYNJ1O43426 1573 aa33.41■■■□□ 2.94
R3HCC1-204ENST00000518840 PBRM1Q86U86 1689 aa33.39■■■□□ 2.94
R3HCC1-204ENST00000518840 ABCA5Q8WWZ7 1642 aa33.39■■■□□ 2.93
R3HCC1-204ENST00000518840 WRNQ14191 1432 aaPredicted RBP eCLIP33.33■■■□□ 2.93
R3HCC1-204ENST00000518840 TOP2BQ02880 1626 aa33.28■■■□□ 2.92
R3HCC1-204ENST00000518840 BIVM-ERCC5R4GMW8 1640 aa33.27■■■□□ 2.92
R3HCC1-204ENST00000518840 TRHP20396 242 aaPredicted RBP33.17■■■□□ 2.9
R3HCC1-204ENST00000518840 GRIN2AQ12879 1464 aa33.16■■■□□ 2.9
R3HCC1-204ENST00000518840 ADAMTS12P58397 1594 aa33.13■■■□□ 2.89
R3HCC1-204ENST00000518840 NUP160Q12769 1436 aa33.06■■■□□ 2.88
R3HCC1-204ENST00000518840 FHAD1B1AJZ9 1412 aa33.05■■■□□ 2.88
R3HCC1-204ENST00000518840 CEP170Q5SW79 1584 aa33.04■■■□□ 2.88
R3HCC1-204ENST00000518840 ERICH3Q5RHP9 1530 aa33.02■■■□□ 2.88
R3HCC1-204ENST00000518840 ERCC6L2Q5T890 1561 aa33■■■□□ 2.87
R3HCC1-204ENST00000518840 SHROOM2Q13796 1616 aa32.87■■■□□ 2.85
R3HCC1-204ENST00000518840 JPH4Q96JJ6 628 aa32.73■■■□□ 2.83
R3HCC1-204ENST00000518840 PRG4Q92954 1404 aaPredicted RBP32.73■■■□□ 2.83
R3HCC1-204ENST00000518840 IGF1RP08069 1367 aa32.68■■■□□ 2.82
R3HCC1-204ENST00000518840 RUSC2Q8N2Y8 1516 aa32.67■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 227.1 ms