RNA–Protein interactions for RNA: ENST00000518678.1

TRAM1-202, Transcript of translocation associated membrane protein 1, humanhuman

TSL 4

Gene TRAM1, Length 535 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1-202ENST00000518678 NISCHQ9Y2I1 1504 aa42.22■■■■■ 4.35
TRAM1-202ENST00000518678 CCDC180Q9P1Z9 1646 aa37.34■■■■□ 3.57
TRAM1-202ENST00000518678 ABCC9O60706 1549 aa37■■■■□ 3.51
TRAM1-202ENST00000518678 ZCCHC6Q5VYS8 1495 aaKnown RBP35.29■■■■□ 3.24
TRAM1-202ENST00000518678 RB1CC1Q8TDY2 1594 aa35.21■■■■□ 3.23
TRAM1-202ENST00000518678 NACADO15069 1562 aa35.01■■■■□ 3.2
TRAM1-202ENST00000518678 DCAF8L2P0C7V8 631 aa35.01■■■■□ 3.2
TRAM1-202ENST00000518678 DCAF1Q9Y4B6 1507 aa34.98■■■■□ 3.19
TRAM1-202ENST00000518678 MYO15BQ96JP2 1530 aa34.94■■■■□ 3.18
TRAM1-202ENST00000518678 UNC13AQ9UPW8 1703 aa34.69■■■■□ 3.14
TRAM1-202ENST00000518678 DNAJC5BQ9UF47 199 aa34.51■■■■□ 3.12
TRAM1-202ENST00000518678 PABPN1Q86U42 306 aaKnown RBP eCLIP34.5■■■■□ 3.11
TRAM1-202ENST00000518678 BICRAQ9NZM4 1560 aa34.35■■■■□ 3.09
TRAM1-202ENST00000518678 SCRIBQ14160 1630 aa34.08■■■■□ 3.05
TRAM1-202ENST00000518678 SHROOM4Q9ULL8 1493 aa33.61■■■□□ 2.97
TRAM1-202ENST00000518678 CC2D2AQ9P2K1 1620 aa33.43■■■□□ 2.94
TRAM1-202ENST00000518678 EIF4G1Q04637 1599 aaKnown RBP33.4■■■□□ 2.94
TRAM1-202ENST00000518678 CECR2Q9BXF3 1484 aa33.22■■■□□ 2.91
TRAM1-202ENST00000518678 BAZ1AQ9NRL2 1556 aaPredicted RBP32.69■■■□□ 2.82
TRAM1-202ENST00000518678 SMARCA4P51532 1647 aa32.66■■■□□ 2.82
TRAM1-202ENST00000518678 MROH2BQ7Z745 1585 aa32.54■■■□□ 2.8
TRAM1-202ENST00000518678 RSF1Q96T23 1441 aaPredicted RBP32.35■■■□□ 2.77
TRAM1-202ENST00000518678 PEG3Q9GZU2 1588 aa32.35■■■□□ 2.77
TRAM1-202ENST00000518678 ATAD2BQ9ULI0 1458 aa32.35■■■□□ 2.77
TRAM1-202ENST00000518678 SMARCA2P51531 1590 aa32.34■■■□□ 2.77
TRAM1-202ENST00000518678 NCAPD3P42695 1498 aa32.32■■■□□ 2.76
TRAM1-202ENST00000518678 WIZO95785 1651 aa32.22■■■□□ 2.75
TRAM1-202ENST00000518678 HMGXB3Q12766 1538 aa32.16■■■□□ 2.74
TRAM1-202ENST00000518678 BAZ1BQ9UIG0 1483 aaKnown RBP32.1■■■□□ 2.73
TRAM1-202ENST00000518678 NESP48681 1621 aa31.93■■■□□ 2.7
TRAM1-202ENST00000518678 TOP2AP11388 1531 aaKnown RBP31.92■■■□□ 2.7
TRAM1-202ENST00000518678 SUPT5HO00267 1087 aaKnown RBP31.86■■■□□ 2.69
TRAM1-202ENST00000518678 ERCC6Q03468 1493 aa31.81■■■□□ 2.68
TRAM1-202ENST00000518678 CUX2O14529 1486 aa31.59■■■□□ 2.65
TRAM1-202ENST00000518678 LAMC3Q9Y6N6 1575 aa31.57■■■□□ 2.64
TRAM1-202ENST00000518678 KIF21AQ7Z4S6 1674 aa31.56■■■□□ 2.64
TRAM1-202ENST00000518678 CCDC88BA6NC98 1476 aa31.53■■■□□ 2.64
TRAM1-202ENST00000518678 THOC2Q8NI27 1593 aaKnown RBP31.51■■■□□ 2.63
TRAM1-202ENST00000518678 CADPSQ9ULU8 1353 aa31.36■■■□□ 2.61
TRAM1-202ENST00000518678 PDS5BQ9NTI5 1447 aa31.31■■■□□ 2.6
TRAM1-202ENST00000518678 DNAJC5Q9H3Z4 198 aa31.27■■■□□ 2.6
TRAM1-202ENST00000518678 CFTRP13569 1480 aa31.27■■■□□ 2.6
TRAM1-202ENST00000518678 MRC2Q9UBG0 1479 aa31.12■■■□□ 2.57
TRAM1-202ENST00000518678 PRDM2Q13029 1718 aa31.1■■■□□ 2.57
TRAM1-202ENST00000518678 FANCD2Q9BXW9 1451 aa31.07■■■□□ 2.56
TRAM1-202ENST00000518678 WDR62O43379 1518 aa31.06■■■□□ 2.56
TRAM1-202ENST00000518678 CEP164Q9UPV0 1460 aa31.05■■■□□ 2.56
TRAM1-202ENST00000518678 URB2Q14146 1524 aaKnown RBP30.88■■■□□ 2.53
TRAM1-202ENST00000518678 ABCC8Q09428 1581 aa30.58■■■□□ 2.49
TRAM1-202ENST00000518678 DNMBPQ6XZF7 1577 aa30.56■■■□□ 2.48
TRAM1-202ENST00000518678 TOPBP1Q92547 1522 aa30.54■■■□□ 2.48
TRAM1-202ENST00000518678 CUX1P39880 1505 aa30.51■■■□□ 2.47
TRAM1-202ENST00000518678 WRNQ14191 1432 aaPredicted RBP eCLIP30.48■■■□□ 2.47
TRAM1-202ENST00000518678 ZNF608Q9ULD9 1512 aaPredicted RBP30.47■■■□□ 2.47
TRAM1-202ENST00000518678 SYNJ1O43426 1573 aa30.4■■■□□ 2.46
TRAM1-202ENST00000518678 BIVM-ERCC5R4GMW8 1640 aa30.39■■■□□ 2.46
TRAM1-202ENST00000518678 TOP2BQ02880 1626 aa30.38■■■□□ 2.45
TRAM1-202ENST00000518678 IFT140Q96RY7 1462 aa30.38■■■□□ 2.45
TRAM1-202ENST00000518678 POLA1P09884 1462 aaPredicted RBP30.31■■■□□ 2.44
TRAM1-202ENST00000518678 FGD5Q6ZNL6 1462 aa30.31■■■□□ 2.44
TRAM1-202ENST00000518678 EIF4G3O43432 1585 aaKnown RBP30.3■■■□□ 2.44
TRAM1-202ENST00000518678 TARBP1Q13395 1621 aaKnown RBP30.29■■■□□ 2.44
TRAM1-202ENST00000518678 RAD54L2Q9Y4B4 1467 aa30.2■■■□□ 2.43
TRAM1-202ENST00000518678 SOGA1O94964 1423 aa30.2■■■□□ 2.42
TRAM1-202ENST00000518678 AQRO60306 1485 aaKnown RBP eCLIP30.19■■■□□ 2.425e-8■■■■■ 33.4
TRAM1-202ENST00000518678 OSCARQ8IYS5 282 aa30.17■■■□□ 2.42
TRAM1-202ENST00000518678 TRIM41Q8WV44 630 aa30.14■■■□□ 2.42
TRAM1-202ENST00000518678 CHD1O14646 1710 aa30.08■■■□□ 2.41
TRAM1-202ENST00000518678 WDR97A6NE52 1622 aa30.07■■■□□ 2.4
TRAM1-202ENST00000518678 CHIC1Q5VXU3 224 aa30.06■■■□□ 2.4
TRAM1-202ENST00000518678 ABCA10Q8WWZ4 1543 aa30.06■■■□□ 2.4
TRAM1-202ENST00000518678 TDRD9Q8NDG6 1382 aaKnown RBP30.03■■■□□ 2.4
TRAM1-202ENST00000518678 RIMBP3CA6NJZ7 1639 aa29.96■■■□□ 2.39
TRAM1-202ENST00000518678 RIMBP3BA6NNM3 1639 aa29.96■■■□□ 2.39
TRAM1-202ENST00000518678 RIMBP3Q9UFD9 1639 aa29.96■■■□□ 2.39
TRAM1-202ENST00000518678 ABCA5Q8WWZ7 1642 aa29.9■■■□□ 2.38
TRAM1-202ENST00000518678 SNAPC4Q5SXM2 1469 aa29.88■■■□□ 2.37
TRAM1-202ENST00000518678 GAPVD1Q14C86 1478 aa29.87■■■□□ 2.37
TRAM1-202ENST00000518678 FBLN2P98095 1184 aa29.86■■■□□ 2.37
TRAM1-202ENST00000518678 ARHGEF11O15085 1522 aa29.84■■■□□ 2.37
TRAM1-202ENST00000518678 PBRM1Q86U86 1689 aa29.82■■■□□ 2.36
TRAM1-202ENST00000518678 KIF27Q86VH2 1401 aa29.81■■■□□ 2.36
TRAM1-202ENST00000518678 GRIN2BQ13224 1484 aa29.79■■■□□ 2.36
TRAM1-202ENST00000518678 ERICH3Q5RHP9 1530 aa29.71■■■□□ 2.35
TRAM1-202ENST00000518678 MAGI1Q96QZ7 1491 aaPredicted RBP29.69■■■□□ 2.34
TRAM1-202ENST00000518678 RUSC2Q8N2Y8 1516 aa29.69■■■□□ 2.34
TRAM1-202ENST00000518678 CLASP1Q7Z460 1538 aa29.65■■■□□ 2.34
TRAM1-202ENST00000518678 IGF1RP08069 1367 aa29.63■■■□□ 2.33
TRAM1-202ENST00000518678 CHMP7Q8WUX9 453 aaPredicted RBP29.62■■■□□ 2.33
TRAM1-202ENST00000518678 SYNJ2O15056 1496 aa29.61■■■□□ 2.33
TRAM1-202ENST00000518678 ARAP1Q96P48 1450 aa29.6■■■□□ 2.33
TRAM1-202ENST00000518678 EEA1Q15075 1411 aa29.58■■■□□ 2.33
TRAM1-202ENST00000518678 ADAMTS12P58397 1594 aa29.57■■■□□ 2.32
TRAM1-202ENST00000518678 CYB5RLQ6IPT4 315 aa29.56■■■□□ 2.32
TRAM1-202ENST00000518678 CUL7Q14999 1698 aa29.54■■■□□ 2.32
TRAM1-202ENST00000518678 FHAD1B1AJZ9 1412 aa29.54■■■□□ 2.32
TRAM1-202ENST00000518678 CARMIL1Q5VZK9 1371 aa29.46■■■□□ 2.31
TRAM1-202ENST00000518678 CSRNP3Q8WYN3 585 aa29.45■■■□□ 2.31
TRAM1-202ENST00000518678 FAM9AQ8IZU1 332 aaPredicted RBP29.44■■■□□ 2.3
TRAM1-202ENST00000518678 GRIN2AQ12879 1464 aa29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 231.7 ms