RNA–Protein interactions for RNA: ENST00000518451.1

HOXA3-203, Transcript of homeobox A3, humanhuman

TSL 4

Gene HOXA3, Length 541 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-203ENST00000518451 NISCHQ9Y2I1 1504 aa45.46■■■■■ 4.87
HOXA3-203ENST00000518451 CCDC180Q9P1Z9 1646 aa40.52■■■■■ 4.08
HOXA3-203ENST00000518451 ABCC9O60706 1549 aa40.13■■■■■ 4.01
HOXA3-203ENST00000518451 RB1CC1Q8TDY2 1594 aa38.44■■■■□ 3.74
HOXA3-203ENST00000518451 DCAF8L2P0C7V8 631 aa38.35■■■■□ 3.73
HOXA3-203ENST00000518451 NACADO15069 1562 aa38.3■■■■□ 3.72
HOXA3-203ENST00000518451 MYO15BQ96JP2 1530 aa37.95■■■■□ 3.67
HOXA3-203ENST00000518451 ZCCHC6Q5VYS8 1495 aaKnown RBP37.73■■■■□ 3.63
HOXA3-203ENST00000518451 DCAF1Q9Y4B6 1507 aa37.61■■■■□ 3.61
HOXA3-203ENST00000518451 PABPN1Q86U42 306 aaKnown RBP eCLIP37.51■■■■□ 3.6
HOXA3-203ENST00000518451 UNC13AQ9UPW8 1703 aa37.34■■■■□ 3.57
HOXA3-203ENST00000518451 DNAJC5BQ9UF47 199 aa37.25■■■■□ 3.55
HOXA3-203ENST00000518451 BICRAQ9NZM4 1560 aa37.18■■■■□ 3.54
HOXA3-203ENST00000518451 SCRIBQ14160 1630 aa36.93■■■■□ 3.5
HOXA3-203ENST00000518451 SHROOM4Q9ULL8 1493 aa36.88■■■■□ 3.5
HOXA3-203ENST00000518451 EIF4G1Q04637 1599 aaKnown RBP36.29■■■■□ 3.4
HOXA3-203ENST00000518451 CC2D2AQ9P2K1 1620 aa36.23■■■■□ 3.39
HOXA3-203ENST00000518451 CECR2Q9BXF3 1484 aa36.14■■■■□ 3.38
HOXA3-203ENST00000518451 NCAPD3P42695 1498 aa35.38■■■■□ 3.25
HOXA3-203ENST00000518451 SMARCA4P51532 1647 aa35.3■■■■□ 3.24
HOXA3-203ENST00000518451 ATAD2BQ9ULI0 1458 aa35.29■■■■□ 3.24
HOXA3-203ENST00000518451 BAZ1AQ9NRL2 1556 aaPredicted RBP35.28■■■■□ 3.24
HOXA3-203ENST00000518451 SMARCA2P51531 1590 aa35.24■■■■□ 3.23
HOXA3-203ENST00000518451 HMGXB3Q12766 1538 aa35.09■■■■□ 3.21
HOXA3-203ENST00000518451 BAZ1BQ9UIG0 1483 aaKnown RBP34.99■■■■□ 3.19
HOXA3-203ENST00000518451 MROH2BQ7Z745 1585 aa34.99■■■■□ 3.19
HOXA3-203ENST00000518451 PEG3Q9GZU2 1588 aa34.99■■■■□ 3.19
HOXA3-203ENST00000518451 ERCC6Q03468 1493 aa34.69■■■■□ 3.14
HOXA3-203ENST00000518451 NESP48681 1621 aa34.56■■■■□ 3.12
HOXA3-203ENST00000518451 WIZO95785 1651 aa34.54■■■■□ 3.12
HOXA3-203ENST00000518451 RSF1Q96T23 1441 aaPredicted RBP34.5■■■■□ 3.11
HOXA3-203ENST00000518451 LAMC3Q9Y6N6 1575 aa34.46■■■■□ 3.11
HOXA3-203ENST00000518451 CUX2O14529 1486 aa34.46■■■■□ 3.11
HOXA3-203ENST00000518451 PDS5BQ9NTI5 1447 aa34.36■■■■□ 3.09
HOXA3-203ENST00000518451 CADPSQ9ULU8 1353 aa34.36■■■■□ 3.09
HOXA3-203ENST00000518451 TOP2AP11388 1531 aaKnown RBP34.2■■■■□ 3.07
HOXA3-203ENST00000518451 THOC2Q8NI27 1593 aaKnown RBP34.06■■■■□ 3.04
HOXA3-203ENST00000518451 KIF21AQ7Z4S6 1674 aa34.05■■■■□ 3.04
HOXA3-203ENST00000518451 CFTRP13569 1480 aa34.01■■■■□ 3.04
HOXA3-203ENST00000518451 DNAJC5Q9H3Z4 198 aa33.98■■■■□ 3.03
HOXA3-203ENST00000518451 MRC2Q9UBG0 1479 aa33.94■■■■□ 3.02
HOXA3-203ENST00000518451 FANCD2Q9BXW9 1451 aa33.9■■■■□ 3.02
HOXA3-203ENST00000518451 CEP164Q9UPV0 1460 aa33.9■■■■□ 3.02
HOXA3-203ENST00000518451 CCDC88BA6NC98 1476 aa33.85■■■■□ 3.01
HOXA3-203ENST00000518451 WDR62O43379 1518 aa33.78■■■■□ 3
HOXA3-203ENST00000518451 URB2Q14146 1524 aaKnown RBP33.53■■■□□ 2.96
HOXA3-203ENST00000518451 PRDM2Q13029 1718 aa33.53■■■□□ 2.96
HOXA3-203ENST00000518451 SUPT5HO00267 1087 aaKnown RBP33.41■■■□□ 2.94
HOXA3-203ENST00000518451 ABCC8Q09428 1581 aa33.37■■■□□ 2.93
HOXA3-203ENST00000518451 TOPBP1Q92547 1522 aa33.28■■■□□ 2.92
HOXA3-203ENST00000518451 IFT140Q96RY7 1462 aa33.24■■■□□ 2.91
HOXA3-203ENST00000518451 DNMBPQ6XZF7 1577 aa33.19■■■□□ 2.9
HOXA3-203ENST00000518451 OSCARQ8IYS5 282 aa33.09■■■□□ 2.89
HOXA3-203ENST00000518451 ZNF608Q9ULD9 1512 aaPredicted RBP33.04■■■□□ 2.88
HOXA3-203ENST00000518451 POLA1P09884 1462 aaPredicted RBP32.97■■■□□ 2.87
HOXA3-203ENST00000518451 SOGA1O94964 1423 aa32.93■■■□□ 2.86
HOXA3-203ENST00000518451 TARBP1Q13395 1621 aaKnown RBP32.9■■■□□ 2.86
HOXA3-203ENST00000518451 AQRO60306 1485 aaKnown RBP eCLIP32.87■■■□□ 2.85
HOXA3-203ENST00000518451 EIF4G3O43432 1585 aaKnown RBP32.84■■■□□ 2.85
HOXA3-203ENST00000518451 CUX1P39880 1505 aa32.84■■■□□ 2.85
HOXA3-203ENST00000518451 RAD54L2Q9Y4B4 1467 aa32.84■■■□□ 2.85
HOXA3-203ENST00000518451 FGD5Q6ZNL6 1462 aa32.83■■■□□ 2.85
HOXA3-203ENST00000518451 TDRD9Q8NDG6 1382 aaKnown RBP32.77■■■□□ 2.84
HOXA3-203ENST00000518451 FBLN2P98095 1184 aa32.68■■■□□ 2.82
HOXA3-203ENST00000518451 WDR97A6NE52 1622 aa32.68■■■□□ 2.82
HOXA3-203ENST00000518451 TRIM41Q8WV44 630 aa32.66■■■□□ 2.82
HOXA3-203ENST00000518451 WRNQ14191 1432 aaPredicted RBP eCLIP32.57■■■□□ 2.8
HOXA3-203ENST00000518451 GRIN2BQ13224 1484 aa32.56■■■□□ 2.8
HOXA3-203ENST00000518451 CHMP7Q8WUX9 453 aaPredicted RBP32.54■■■□□ 2.8
HOXA3-203ENST00000518451 ABCA10Q8WWZ4 1543 aa32.51■■■□□ 2.8
HOXA3-203ENST00000518451 SNAPC4Q5SXM2 1469 aa32.51■■■□□ 2.79
HOXA3-203ENST00000518451 GAPVD1Q14C86 1478 aa32.5■■■□□ 2.79
HOXA3-203ENST00000518451 MAGI1Q96QZ7 1491 aaPredicted RBP32.5■■■□□ 2.79
HOXA3-203ENST00000518451 CHD1O14646 1710 aa32.46■■■□□ 2.79
HOXA3-203ENST00000518451 TOP2BQ02880 1626 aa32.46■■■□□ 2.79
HOXA3-203ENST00000518451 BIVM-ERCC5R4GMW8 1640 aa32.41■■■□□ 2.78
HOXA3-203ENST00000518451 SYNJ2O15056 1496 aa32.38■■■□□ 2.77
HOXA3-203ENST00000518451 SYNJ1O43426 1573 aa32.37■■■□□ 2.77
HOXA3-203ENST00000518451 RIMBP3CA6NJZ7 1639 aa32.37■■■□□ 2.77
HOXA3-203ENST00000518451 RIMBP3BA6NNM3 1639 aa32.37■■■□□ 2.77
HOXA3-203ENST00000518451 RIMBP3Q9UFD9 1639 aa32.37■■■□□ 2.77
HOXA3-203ENST00000518451 ARHGEF11O15085 1522 aa32.36■■■□□ 2.77
HOXA3-203ENST00000518451 ABCA5Q8WWZ7 1642 aa32.33■■■□□ 2.77
HOXA3-203ENST00000518451 PBRM1Q86U86 1689 aa32.28■■■□□ 2.76
HOXA3-203ENST00000518451 CYB5RLQ6IPT4 315 aa32.24■■■□□ 2.75
HOXA3-203ENST00000518451 CLASP1Q7Z460 1538 aa32.17■■■□□ 2.74
HOXA3-203ENST00000518451 FHAD1B1AJZ9 1412 aa32.13■■■□□ 2.73
HOXA3-203ENST00000518451 ERICH3Q5RHP9 1530 aa32.12■■■□□ 2.73
HOXA3-203ENST00000518451 GRIN2AQ12879 1464 aa32.1■■■□□ 2.73
HOXA3-203ENST00000518451 ARAP1Q96P48 1450 aa32.06■■■□□ 2.72
HOXA3-203ENST00000518451 ADAMTS12P58397 1594 aa32.06■■■□□ 2.72
HOXA3-203ENST00000518451 NUP160Q12769 1436 aa31.98■■■□□ 2.71
HOXA3-203ENST00000518451 KIF27Q86VH2 1401 aa31.96■■■□□ 2.71
HOXA3-203ENST00000518451 IGF1RP08069 1367 aa31.88■■■□□ 2.69
HOXA3-203ENST00000518451 CEP170Q5SW79 1584 aa31.88■■■□□ 2.69
HOXA3-203ENST00000518451 JPH4Q96JJ6 628 aa31.78■■■□□ 2.68
HOXA3-203ENST00000518451 TRHP20396 242 aaPredicted RBP31.77■■■□□ 2.68
HOXA3-203ENST00000518451 SHROOM2Q13796 1616 aa31.7■■■□□ 2.66
HOXA3-203ENST00000518451 CUL7Q14999 1698 aa31.7■■■□□ 2.66
HOXA3-203ENST00000518451 CARMIL1Q5VZK9 1371 aa31.69■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms