RNA–Protein interactions for RNA: ENST00000518271.1

MRPS28-202, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 5

Gene MRPS28, Length 487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-202ENST00000518271 NISCHQ9Y2I1 1504 aa30.47■■■□□ 2.47
MRPS28-202ENST00000518271 CCDC180Q9P1Z9 1646 aa27.28■■□□□ 1.96
MRPS28-202ENST00000518271 ABCC9O60706 1549 aa26.8■■□□□ 1.88
MRPS28-202ENST00000518271 RB1CC1Q8TDY2 1594 aa25.69■■□□□ 1.7
MRPS28-202ENST00000518271 NACADO15069 1562 aa25.61■■□□□ 1.69
MRPS28-202ENST00000518271 MYO15BQ96JP2 1530 aa25.41■■□□□ 1.66
MRPS28-202ENST00000518271 ZCCHC6Q5VYS8 1495 aaKnown RBP25.38■■□□□ 1.65
MRPS28-202ENST00000518271 DCAF8L2P0C7V8 631 aa25.31■■□□□ 1.64
MRPS28-202ENST00000518271 UNC13AQ9UPW8 1703 aa25.31■■□□□ 1.64
MRPS28-202ENST00000518271 DCAF1Q9Y4B6 1507 aa25.22■■□□□ 1.63
MRPS28-202ENST00000518271 BICRAQ9NZM4 1560 aa25.04■■□□□ 1.6
MRPS28-202ENST00000518271 PABPN1Q86U42 306 aaKnown RBP eCLIP24.93■■□□□ 1.58
MRPS28-202ENST00000518271 SCRIBQ14160 1630 aa24.83■■□□□ 1.56
MRPS28-202ENST00000518271 DNAJC5BQ9UF47 199 aa24.82■■□□□ 1.56
MRPS28-202ENST00000518271 SHROOM4Q9ULL8 1493 aa24.66■■□□□ 1.54
MRPS28-202ENST00000518271 EIF4G1Q04637 1599 aaKnown RBP24.33■■□□□ 1.49
MRPS28-202ENST00000518271 CC2D2AQ9P2K1 1620 aa24.29■■□□□ 1.48
MRPS28-202ENST00000518271 CECR2Q9BXF3 1484 aa24.09■■□□□ 1.45
MRPS28-202ENST00000518271 SMARCA4P51532 1647 aa23.75■■□□□ 1.39
MRPS28-202ENST00000518271 BAZ1AQ9NRL2 1556 aaPredicted RBP23.62■■□□□ 1.37
MRPS28-202ENST00000518271 NCAPD3P42695 1498 aa23.62■■□□□ 1.37
MRPS28-202ENST00000518271 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
MRPS28-202ENST00000518271 SMARCA2P51531 1590 aa23.56■■□□□ 1.36
MRPS28-202ENST00000518271 HMGXB3Q12766 1538 aa23.54■■□□□ 1.36
MRPS28-202ENST00000518271 PEG3Q9GZU2 1588 aa23.52■■□□□ 1.36
MRPS28-202ENST00000518271 MROH2BQ7Z745 1585 aa23.51■■□□□ 1.35
MRPS28-202ENST00000518271 BAZ1BQ9UIG0 1483 aaKnown RBP23.37■■□□□ 1.33
MRPS28-202ENST00000518271 WIZO95785 1651 aa23.27■■□□□ 1.32
MRPS28-202ENST00000518271 NESP48681 1621 aa23.17■■□□□ 1.3
MRPS28-202ENST00000518271 RSF1Q96T23 1441 aaPredicted RBP23.11■■□□□ 1.29
MRPS28-202ENST00000518271 LAMC3Q9Y6N6 1575 aa23.06■■□□□ 1.28
MRPS28-202ENST00000518271 ERCC6Q03468 1493 aa23.05■■□□□ 1.28
MRPS28-202ENST00000518271 TOP2AP11388 1531 aaKnown RBP22.98■■□□□ 1.27
MRPS28-202ENST00000518271 KIF21AQ7Z4S6 1674 aa22.97■■□□□ 1.27
MRPS28-202ENST00000518271 CUX2O14529 1486 aa22.96■■□□□ 1.27
MRPS28-202ENST00000518271 THOC2Q8NI27 1593 aaKnown RBP22.95■■□□□ 1.26
MRPS28-202ENST00000518271 CADPSQ9ULU8 1353 aa22.88■■□□□ 1.25
MRPS28-202ENST00000518271 PDS5BQ9NTI5 1447 aa22.82■■□□□ 1.24
MRPS28-202ENST00000518271 CFTRP13569 1480 aa22.74■■□□□ 1.23
MRPS28-202ENST00000518271 PRDM2Q13029 1718 aa22.71■■□□□ 1.23
MRPS28-202ENST00000518271 CCDC88BA6NC98 1476 aa22.67■■□□□ 1.22
MRPS28-202ENST00000518271 MRC2Q9UBG0 1479 aa22.67■■□□□ 1.22
MRPS28-202ENST00000518271 WDR62O43379 1518 aa22.67■■□□□ 1.22
MRPS28-202ENST00000518271 FANCD2Q9BXW9 1451 aa22.65■■□□□ 1.22
MRPS28-202ENST00000518271 CEP164Q9UPV0 1460 aa22.64■■□□□ 1.21
MRPS28-202ENST00000518271 URB2Q14146 1524 aaKnown RBP22.5■■□□□ 1.19
MRPS28-202ENST00000518271 DNAJC5Q9H3Z4 198 aa22.44■■□□□ 1.18
MRPS28-202ENST00000518271 TOPBP1Q92547 1522 aa22.3■■□□□ 1.16
MRPS28-202ENST00000518271 DNMBPQ6XZF7 1577 aa22.27■■□□□ 1.16
MRPS28-202ENST00000518271 ABCC8Q09428 1581 aa22.19■■□□□ 1.14
MRPS28-202ENST00000518271 SUPT5HO00267 1087 aaKnown RBP22.18■■□□□ 1.14
MRPS28-202ENST00000518271 IFT140Q96RY7 1462 aa22.16■■□□□ 1.14
MRPS28-202ENST00000518271 TARBP1Q13395 1621 aaKnown RBP22.14■■□□□ 1.14
MRPS28-202ENST00000518271 ZNF608Q9ULD9 1512 aaPredicted RBP22.14■■□□□ 1.13
MRPS28-202ENST00000518271 POLA1P09884 1462 aaPredicted RBP22.09■■□□□ 1.13
MRPS28-202ENST00000518271 EIF4G3O43432 1585 aaKnown RBP22.09■■□□□ 1.13
MRPS28-202ENST00000518271 CUX1P39880 1505 aa22.07■■□□□ 1.12
MRPS28-202ENST00000518271 FGD5Q6ZNL6 1462 aa22■■□□□ 1.11
MRPS28-202ENST00000518271 RAD54L2Q9Y4B4 1467 aa21.98■■□□□ 1.11
MRPS28-202ENST00000518271 WDR97A6NE52 1622 aa21.96■■□□□ 1.11
MRPS28-202ENST00000518271 AQRO60306 1485 aaKnown RBP eCLIP21.94■■□□□ 1.1
MRPS28-202ENST00000518271 SOGA1O94964 1423 aa21.9■■□□□ 1.1
MRPS28-202ENST00000518271 CHD1O14646 1710 aa21.89■■□□□ 1.1
MRPS28-202ENST00000518271 BIVM-ERCC5R4GMW8 1640 aa21.86■■□□□ 1.09
MRPS28-202ENST00000518271 SYNJ1O43426 1573 aa21.83■■□□□ 1.09
MRPS28-202ENST00000518271 TOP2BQ02880 1626 aa21.82■■□□□ 1.08
MRPS28-202ENST00000518271 OSCARQ8IYS5 282 aa21.82■■□□□ 1.08
MRPS28-202ENST00000518271 TDRD9Q8NDG6 1382 aaKnown RBP21.82■■□□□ 1.08
MRPS28-202ENST00000518271 PBRM1Q86U86 1689 aa21.79■■□□□ 1.08
MRPS28-202ENST00000518271 ABCA5Q8WWZ7 1642 aa21.79■■□□□ 1.08
MRPS28-202ENST00000518271 ABCA10Q8WWZ4 1543 aa21.77■■□□□ 1.08
MRPS28-202ENST00000518271 SNAPC4Q5SXM2 1469 aa21.76■■□□□ 1.07
MRPS28-202ENST00000518271 WRNQ14191 1432 aaPredicted RBP eCLIP21.75■■□□□ 1.07
MRPS28-202ENST00000518271 GRIN2BQ13224 1484 aa21.71■■□□□ 1.07
MRPS28-202ENST00000518271 RIMBP3CA6NJZ7 1639 aa21.71■■□□□ 1.07
MRPS28-202ENST00000518271 RIMBP3BA6NNM3 1639 aa21.71■■□□□ 1.07
MRPS28-202ENST00000518271 RIMBP3Q9UFD9 1639 aa21.71■■□□□ 1.07
MRPS28-202ENST00000518271 MAGI1Q96QZ7 1491 aaPredicted RBP21.71■■□□□ 1.07
MRPS28-202ENST00000518271 GAPVD1Q14C86 1478 aa21.69■■□□□ 1.06
MRPS28-202ENST00000518271 ARHGEF11O15085 1522 aa21.64■■□□□ 1.05
MRPS28-202ENST00000518271 CLASP1Q7Z460 1538 aa21.62■■□□□ 1.05
MRPS28-202ENST00000518271 SYNJ2O15056 1496 aa21.61■■□□□ 1.05
MRPS28-202ENST00000518271 ADAMTS12P58397 1594 aa21.58■■□□□ 1.05
MRPS28-202ENST00000518271 FBLN2P98095 1184 aa21.57■■□□□ 1.04
MRPS28-202ENST00000518271 TRIM41Q8WV44 630 aa21.55■■□□□ 1.04
MRPS28-202ENST00000518271 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
MRPS28-202ENST00000518271 CHMP7Q8WUX9 453 aaPredicted RBP21.49■■□□□ 1.03
MRPS28-202ENST00000518271 GRIN2AQ12879 1464 aa21.47■■□□□ 1.03
MRPS28-202ENST00000518271 ARAP1Q96P48 1450 aa21.47■■□□□ 1.03
MRPS28-202ENST00000518271 CEP170Q5SW79 1584 aa21.44■■□□□ 1.02
MRPS28-202ENST00000518271 FHAD1B1AJZ9 1412 aa21.42■■□□□ 1.02
MRPS28-202ENST00000518271 NUP160Q12769 1436 aa21.4■■□□□ 1.02
MRPS28-202ENST00000518271 SHROOM2Q13796 1616 aa21.34■■□□□ 1.01
MRPS28-202ENST00000518271 ERCC6L2Q5T890 1561 aa21.31■■□□□ 1
MRPS28-202ENST00000518271 CUL7Q14999 1698 aa21.29■■□□□ 1
MRPS28-202ENST00000518271 CYB5RLQ6IPT4 315 aa21.29■■□□□ 1
MRPS28-202ENST00000518271 KIF27Q86VH2 1401 aa21.29■■□□□ 1
MRPS28-202ENST00000518271 RUSC2Q8N2Y8 1516 aa21.28■■□□□ 1
MRPS28-202ENST00000518271 IGF1RP08069 1367 aa21.25■□□□□ 0.99
MRPS28-202ENST00000518271 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms