RNA–Protein interactions for RNA: ENST00000518140.5

SLIT3-204, Transcript of slit guidance ligand 3, humanhuman

TSL 1 (best)

Gene SLIT3, Length 2,090 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIT3-204ENST00000518140 NISCHQ9Y2I1 1504 aa52.62■■■■■ 6.01
SLIT3-204ENST00000518140 CCDC180Q9P1Z9 1646 aa45.62■■■■■ 4.89
SLIT3-204ENST00000518140 ZCCHC6Q5VYS8 1495 aaKnown RBP44.19■■■■■ 4.66
SLIT3-204ENST00000518140 DCAF8L2P0C7V8 631 aa43.73■■■■■ 4.59
SLIT3-204ENST00000518140 ABCC9O60706 1549 aa43.39■■■■■ 4.54
SLIT3-204ENST00000518140 DCAF1Q9Y4B6 1507 aa43.35■■■■■ 4.53
SLIT3-204ENST00000518140 SHROOM4Q9ULL8 1493 aa43.29■■■■■ 4.52
SLIT3-204ENST00000518140 MYO15BQ96JP2 1530 aa42.76■■■■■ 4.44
SLIT3-204ENST00000518140 NACADO15069 1562 aa42.54■■■■■ 4.4
SLIT3-204ENST00000518140 SCRIBQ14160 1630 aa42.22■■■■■ 4.35
SLIT3-204ENST00000518140 RB1CC1Q8TDY2 1594 aa42.17■■■■■ 4.34
SLIT3-204ENST00000518140 SUPT5HO00267 1087 aaKnown RBP41.71■■■■■ 4.27
SLIT3-204ENST00000518140 UNC13AQ9UPW8 1703 aa41.38■■■■■ 4.21
SLIT3-204ENST00000518140 PABPN1Q86U42 306 aaKnown RBP eCLIP41.08■■■■■ 4.17
SLIT3-204ENST00000518140 CECR2Q9BXF3 1484 aa41.04■■■■■ 4.16
SLIT3-204ENST00000518140 BICRAQ9NZM4 1560 aa41.03■■■■■ 4.16
SLIT3-204ENST00000518140 RSF1Q96T23 1441 aaPredicted RBP40.95■■■■■ 4.15
SLIT3-204ENST00000518140 MROH2BQ7Z745 1585 aa40.75■■■■■ 4.11
SLIT3-204ENST00000518140 BAZ1AQ9NRL2 1556 aaPredicted RBP40.54■■■■■ 4.08
SLIT3-204ENST00000518140 WIZO95785 1651 aa40.4■■■■■ 4.06
SLIT3-204ENST00000518140 SMARCA4P51532 1647 aa40.39■■■■■ 4.06
SLIT3-204ENST00000518140 CHIC1Q5VXU3 224 aa39.92■■■■□ 3.98
SLIT3-204ENST00000518140 TOP2AP11388 1531 aaKnown RBP39.87■■■■□ 3.97
SLIT3-204ENST00000518140 PEG3Q9GZU2 1588 aa39.82■■■■□ 3.97
SLIT3-204ENST00000518140 ATAD2BQ9ULI0 1458 aa39.77■■■■□ 3.96
SLIT3-204ENST00000518140 EIF4G1Q04637 1599 aaKnown RBP39.74■■■■□ 3.95
SLIT3-204ENST00000518140 SMARCA2P51531 1590 aa39.62■■■■□ 3.93
SLIT3-204ENST00000518140 CCDC88BA6NC98 1476 aa39.6■■■■□ 3.93
SLIT3-204ENST00000518140 BAZ1BQ9UIG0 1483 aaKnown RBP39.52■■■■□ 3.92
SLIT3-204ENST00000518140 NCAPD3P42695 1498 aa39.36■■■■□ 3.89
SLIT3-204ENST00000518140 HMGXB3Q12766 1538 aa39.22■■■■□ 3.87
SLIT3-204ENST00000518140 CC2D2AQ9P2K1 1620 aa39.16■■■■□ 3.86
SLIT3-204ENST00000518140 TRIM41Q8WV44 630 aa39.09■■■■□ 3.85
SLIT3-204ENST00000518140 ABCC8Q09428 1581 aa38.84■■■■□ 3.81
SLIT3-204ENST00000518140 LOC105371045A0A1W2PR82 267 aa38.54■■■■□ 3.76
SLIT3-204ENST00000518140 FAM9AQ8IZU1 332 aaPredicted RBP38.54■■■■□ 3.76
SLIT3-204ENST00000518140 CFTRP13569 1480 aa38.54■■■■□ 3.76
SLIT3-204ENST00000518140 DNAJC5BQ9UF47 199 aa38.51■■■■□ 3.76
SLIT3-204ENST00000518140 WRNQ14191 1432 aaPredicted RBP eCLIP38.5■■■■□ 3.75
SLIT3-204ENST00000518140 CADPSQ9ULU8 1353 aa38.41■■■■□ 3.74
SLIT3-204ENST00000518140 SYNJ1O43426 1573 aa38.35■■■■□ 3.73
SLIT3-204ENST00000518140 SOGA1O94964 1423 aa38.18■■■■□ 3.7
SLIT3-204ENST00000518140 NESP48681 1621 aa38.16■■■■□ 3.7
SLIT3-204ENST00000518140 PRDM2Q13029 1718 aa38.13■■■■□ 3.69
SLIT3-204ENST00000518140 EHMT2Q96KQ7 1210 aa38.11■■■■□ 3.69
SLIT3-204ENST00000518140 TOP2BQ02880 1626 aa38.09■■■■□ 3.69
SLIT3-204ENST00000518140 RUSC2Q8N2Y8 1516 aa38.07■■■■□ 3.69
SLIT3-204ENST00000518140 CUX1P39880 1505 aa38.07■■■■□ 3.68
SLIT3-204ENST00000518140 BIVM-ERCC5R4GMW8 1640 aa38■■■■□ 3.67
SLIT3-204ENST00000518140 FANCD2Q9BXW9 1451 aa37.99■■■■□ 3.67
SLIT3-204ENST00000518140 LAMC3Q9Y6N6 1575 aa37.92■■■■□ 3.66
SLIT3-204ENST00000518140 CSRNP3Q8WYN3 585 aa37.86■■■■□ 3.65
SLIT3-204ENST00000518140 EEA1Q15075 1411 aa37.85■■■■□ 3.65
SLIT3-204ENST00000518140 PDS5BQ9NTI5 1447 aa37.69■■■■□ 3.62
SLIT3-204ENST00000518140 CEP164Q9UPV0 1460 aa37.68■■■■□ 3.62
SLIT3-204ENST00000518140 FGD5Q6ZNL6 1462 aa37.62■■■■□ 3.61
SLIT3-204ENST00000518140 TOPBP1Q92547 1522 aa37.58■■■■□ 3.61
SLIT3-204ENST00000518140 DNMBPQ6XZF7 1577 aa37.58■■■■□ 3.61
SLIT3-204ENST00000518140 KIF21AQ7Z4S6 1674 aa37.54■■■■□ 3.6
SLIT3-204ENST00000518140 URB2Q14146 1524 aaKnown RBP37.54■■■■□ 3.6
SLIT3-204ENST00000518140 KIF27Q86VH2 1401 aa37.48■■■■□ 3.59
SLIT3-204ENST00000518140 UBTFP17480 764 aaKnown RBP37.44■■■■□ 3.58
SLIT3-204ENST00000518140 POLA1P09884 1462 aaPredicted RBP37.42■■■■□ 3.58
SLIT3-204ENST00000518140 GOLGA3Q08378 1498 aa37.42■■■■□ 3.58
SLIT3-204ENST00000518140 CUX2O14529 1486 aa37.42■■■■□ 3.58
SLIT3-204ENST00000518140 RAD54L2Q9Y4B4 1467 aa37.4■■■■□ 3.58
SLIT3-204ENST00000518140 KIF21BO75037 1637 aa37.38■■■■□ 3.57
SLIT3-204ENST00000518140 TNIKQ9UKE5 1360 aa37.38■■■■□ 3.57
SLIT3-204ENST00000518140 RAPGEF2Q9Y4G8 1499 aa37.34■■■■□ 3.57
SLIT3-204ENST00000518140 PRXQ9BXM0 1461 aa37.28■■■■□ 3.56
SLIT3-204ENST00000518140 IGF1RP08069 1367 aa37.25■■■■□ 3.55
SLIT3-204ENST00000518140 CEP162Q5TB80 1403 aa37.23■■■■□ 3.55
SLIT3-204ENST00000518140 ABCA10Q8WWZ4 1543 aa37.22■■■■□ 3.55
SLIT3-204ENST00000518140 MRC2Q9UBG0 1479 aa37.21■■■■□ 3.55
SLIT3-204ENST00000518140 ERICH3Q5RHP9 1530 aa37.11■■■■□ 3.53
SLIT3-204ENST00000518140 ERCC6Q03468 1493 aa37.09■■■■□ 3.53
SLIT3-204ENST00000518140 TDRD9Q8NDG6 1382 aaKnown RBP37.06■■■■□ 3.52
SLIT3-204ENST00000518140 CARMIL1Q5VZK9 1371 aa37.02■■■■□ 3.52
SLIT3-204ENST00000518140 WDR97A6NE52 1622 aa37.02■■■■□ 3.52
SLIT3-204ENST00000518140 WDR62O43379 1518 aa36.98■■■■□ 3.51
SLIT3-204ENST00000518140 TARBP1Q13395 1621 aaKnown RBP36.97■■■■□ 3.51
SLIT3-204ENST00000518140 RANGAP1P46060 587 aaPredicted RBP36.97■■■■□ 3.51
SLIT3-204ENST00000518140 CLIP1P30622 1438 aa36.91■■■■□ 3.5
SLIT3-204ENST00000518140 GAPVD1Q14C86 1478 aa36.88■■■■□ 3.49
SLIT3-204ENST00000518140 ABCA5Q8WWZ7 1642 aa36.88■■■■□ 3.49
SLIT3-204ENST00000518140 THOC2Q8NI27 1593 aaKnown RBP36.85■■■■□ 3.49
SLIT3-204ENST00000518140 PCGF6Q9BYE7 350 aa36.81■■■■□ 3.48
SLIT3-204ENST00000518140 PPARGC1BQ86YN6 1023 aaKnown RBP36.79■■■■□ 3.48
SLIT3-204ENST00000518140 AQRO60306 1485 aaKnown RBP eCLIP36.79■■■■□ 3.48
SLIT3-204ENST00000518140 IFT140Q96RY7 1462 aa36.76■■■■□ 3.47
SLIT3-204ENST00000518140 ZNF608Q9ULD9 1512 aaPredicted RBP36.72■■■■□ 3.47
SLIT3-204ENST00000518140 CUL7Q14999 1698 aa36.71■■■■□ 3.47
SLIT3-204ENST00000518140 TRIM26Q12899 539 aaPredicted RBP36.64■■■■□ 3.46
SLIT3-204ENST00000518140 PBRM1Q86U86 1689 aa36.56■■■■□ 3.44
SLIT3-204ENST00000518140 VPS8Q8N3P4 1428 aa36.55■■■■□ 3.44
SLIT3-204ENST00000518140 ARAP1Q96P48 1450 aa36.54■■■■□ 3.44
SLIT3-204ENST00000518140 GRIN2BQ13224 1484 aa36.54■■■■□ 3.44
SLIT3-204ENST00000518140 ARHGAP35Q9NRY4 1499 aa36.52■■■■□ 3.44
SLIT3-204ENST00000518140 FHAD1B1AJZ9 1412 aa36.45■■■■□ 3.43
SLIT3-204ENST00000518140 TTBK1Q5TCY1 1321 aaPredicted RBP36.45■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms