RNA–Protein interactions for RNA: ENST00000517660.1

PDGFRB-203, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 611 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-203ENST00000517660 NISCHQ9Y2I1 1504 aa26.21■■□□□ 1.79
PDGFRB-203ENST00000517660 ABCC9O60706 1549 aa24.62■■□□□ 1.53
PDGFRB-203ENST00000517660 DNAJC5BQ9UF47 199 aa23.92■■□□□ 1.42
PDGFRB-203ENST00000517660 CCDC180Q9P1Z9 1646 aa23.8■■□□□ 1.4
PDGFRB-203ENST00000517660 RB1CC1Q8TDY2 1594 aa23.01■■□□□ 1.27
PDGFRB-203ENST00000517660 PABPN1Q86U42 306 aaKnown RBP eCLIP22.8■■□□□ 1.24
PDGFRB-203ENST00000517660 NACADO15069 1562 aa22.68■■□□□ 1.22
PDGFRB-203ENST00000517660 UNC13AQ9UPW8 1703 aa22.55■■□□□ 1.2
PDGFRB-203ENST00000517660 BICRAQ9NZM4 1560 aa22.53■■□□□ 1.2
PDGFRB-203ENST00000517660 DNAJC5Q9H3Z4 198 aa22.42■■□□□ 1.18
PDGFRB-203ENST00000517660 DCAF8L2P0C7V8 631 aa22.32■■□□□ 1.16
PDGFRB-203ENST00000517660 CECR2Q9BXF3 1484 aa22.24■■□□□ 1.15
PDGFRB-203ENST00000517660 CC2D2AQ9P2K1 1620 aa22.2■■□□□ 1.14
PDGFRB-203ENST00000517660 MYO15BQ96JP2 1530 aa22.15■■□□□ 1.14
PDGFRB-203ENST00000517660 SHROOM4Q9ULL8 1493 aa22■■□□□ 1.11
PDGFRB-203ENST00000517660 EIF4G1Q04637 1599 aaKnown RBP21.96■■□□□ 1.11
PDGFRB-203ENST00000517660 SCRIBQ14160 1630 aa21.68■■□□□ 1.06
PDGFRB-203ENST00000517660 DCAF1Q9Y4B6 1507 aa21.58■■□□□ 1.04
PDGFRB-203ENST00000517660 ZCCHC6Q5VYS8 1495 aaKnown RBP21.58■■□□□ 1.04
PDGFRB-203ENST00000517660 CUX2O14529 1486 aa21.5■■□□□ 1.03
PDGFRB-203ENST00000517660 ERCC6Q03468 1493 aa21.22■□□□□ 0.99
PDGFRB-203ENST00000517660 TRIM41Q8WV44 630 aa21.05■□□□□ 0.96
PDGFRB-203ENST00000517660 NCAPD3P42695 1498 aa21.01■□□□□ 0.95
PDGFRB-203ENST00000517660 NESP48681 1621 aa20.98■□□□□ 0.95
PDGFRB-203ENST00000517660 THOC2Q8NI27 1593 aaKnown RBP20.91■□□□□ 0.94
PDGFRB-203ENST00000517660 ATAD2BQ9ULI0 1458 aa20.85■□□□□ 0.93
PDGFRB-203ENST00000517660 HMGXB3Q12766 1538 aa20.76■□□□□ 0.91
PDGFRB-203ENST00000517660 SMARCA2P51531 1590 aa20.68■□□□□ 0.9
PDGFRB-203ENST00000517660 KIF21AQ7Z4S6 1674 aa20.61■□□□□ 0.89
PDGFRB-203ENST00000517660 LAMC3Q9Y6N6 1575 aa20.6■□□□□ 0.89
PDGFRB-203ENST00000517660 SMARCA4P51532 1647 aa20.6■□□□□ 0.89
PDGFRB-203ENST00000517660 BAZ1BQ9UIG0 1483 aaKnown RBP20.53■□□□□ 0.88
PDGFRB-203ENST00000517660 PDS5BQ9NTI5 1447 aa20.48■□□□□ 0.87
PDGFRB-203ENST00000517660 BAZ1AQ9NRL2 1556 aaPredicted RBP20.45■□□□□ 0.86
PDGFRB-203ENST00000517660 PEG3Q9GZU2 1588 aa20.42■□□□□ 0.86
PDGFRB-203ENST00000517660 WDR62O43379 1518 aa20.42■□□□□ 0.86
PDGFRB-203ENST00000517660 MRC2Q9UBG0 1479 aa20.41■□□□□ 0.86
PDGFRB-203ENST00000517660 OSCARQ8IYS5 282 aa20.34■□□□□ 0.85
PDGFRB-203ENST00000517660 CADPSQ9ULU8 1353 aa20.31■□□□□ 0.84
PDGFRB-203ENST00000517660 RIMBP3CA6NJZ7 1639 aa20.25■□□□□ 0.83
PDGFRB-203ENST00000517660 RIMBP3BA6NNM3 1639 aa20.25■□□□□ 0.83
PDGFRB-203ENST00000517660 RIMBP3Q9UFD9 1639 aa20.25■□□□□ 0.83
PDGFRB-203ENST00000517660 MROH2BQ7Z745 1585 aa20.23■□□□□ 0.83
PDGFRB-203ENST00000517660 CEP164Q9UPV0 1460 aa20.14■□□□□ 0.81
PDGFRB-203ENST00000517660 ARHGEF11O15085 1522 aa20.11■□□□□ 0.81
PDGFRB-203ENST00000517660 FANCD2Q9BXW9 1451 aa20.08■□□□□ 0.81
PDGFRB-203ENST00000517660 URB2Q14146 1524 aaKnown RBP20.03■□□□□ 0.8
PDGFRB-203ENST00000517660 CYB5RLQ6IPT4 315 aa19.95■□□□□ 0.78
PDGFRB-203ENST00000517660 CFTRP13569 1480 aa19.94■□□□□ 0.78
PDGFRB-203ENST00000517660 ZNF608Q9ULD9 1512 aaPredicted RBP19.92■□□□□ 0.78
PDGFRB-203ENST00000517660 TRHP20396 242 aaPredicted RBP19.91■□□□□ 0.78
PDGFRB-203ENST00000517660 WIZO95785 1651 aa19.91■□□□□ 0.78
PDGFRB-203ENST00000517660 ARAP1Q96P48 1450 aa19.9■□□□□ 0.78
PDGFRB-203ENST00000517660 AEBP2Q6ZN18 517 aaPredicted RBP19.85■□□□□ 0.77
PDGFRB-203ENST00000517660 IFT140Q96RY7 1462 aa19.78■□□□□ 0.76
PDGFRB-203ENST00000517660 EIF4G3O43432 1585 aaKnown RBP19.71■□□□□ 0.75
PDGFRB-203ENST00000517660 RSF1Q96T23 1441 aaPredicted RBP19.7■□□□□ 0.74
PDGFRB-203ENST00000517660 CHD1O14646 1710 aa19.68■□□□□ 0.74
PDGFRB-203ENST00000517660 TOPBP1Q92547 1522 aa19.63■□□□□ 0.73
PDGFRB-203ENST00000517660 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.73
PDGFRB-203ENST00000517660 TOP2AP11388 1531 aaKnown RBP19.58■□□□□ 0.73
PDGFRB-203ENST00000517660 PRDM2Q13029 1718 aa19.56■□□□□ 0.72
PDGFRB-203ENST00000517660 TARBP1Q13395 1621 aaKnown RBP19.54■□□□□ 0.72
PDGFRB-203ENST00000517660 CLASP1Q7Z460 1538 aa19.51■□□□□ 0.71
PDGFRB-203ENST00000517660 FBLN2P98095 1184 aa19.51■□□□□ 0.71
PDGFRB-203ENST00000517660 DNMBPQ6XZF7 1577 aa19.46■□□□□ 0.71
PDGFRB-203ENST00000517660 ABCC8Q09428 1581 aa19.42■□□□□ 0.7
PDGFRB-203ENST00000517660 CCDC88BA6NC98 1476 aa19.4■□□□□ 0.7
PDGFRB-203ENST00000517660 POLA1P09884 1462 aaPredicted RBP19.39■□□□□ 0.69
PDGFRB-203ENST00000517660 SNAPC4Q5SXM2 1469 aa19.36■□□□□ 0.69
PDGFRB-203ENST00000517660 RAD54L2Q9Y4B4 1467 aa19.35■□□□□ 0.69
PDGFRB-203ENST00000517660 TDRD9Q8NDG6 1382 aaKnown RBP19.34■□□□□ 0.69
PDGFRB-203ENST00000517660 SYNJ1O43426 1573 aa19.31■□□□□ 0.68
PDGFRB-203ENST00000517660 GAPVD1Q14C86 1478 aa19.3■□□□□ 0.68
PDGFRB-203ENST00000517660 ILDR1Q86SU0 546 aaPredicted RBP19.27■□□□□ 0.68
PDGFRB-203ENST00000517660 CHMP7Q8WUX9 453 aaPredicted RBP19.24■□□□□ 0.67
PDGFRB-203ENST00000517660 SOGA1O94964 1423 aa19.24■□□□□ 0.67
PDGFRB-203ENST00000517660 MAGI1Q96QZ7 1491 aaPredicted RBP19.23■□□□□ 0.67
PDGFRB-203ENST00000517660 SYNJ2O15056 1496 aa19.2■□□□□ 0.66
PDGFRB-203ENST00000517660 ERCC6L2Q5T890 1561 aa19.19■□□□□ 0.66
PDGFRB-203ENST00000517660 WDR97A6NE52 1622 aa19.18■□□□□ 0.66
PDGFRB-203ENST00000517660 GRIN2BQ13224 1484 aa19.16■□□□□ 0.66
PDGFRB-203ENST00000517660 FGD5Q6ZNL6 1462 aa19.14■□□□□ 0.65
PDGFRB-203ENST00000517660 KIF13AQ9H1H9 1805 aa19.09■□□□□ 0.65
PDGFRB-203ENST00000517660 KDM4FA0A1W2PPD8 638 aa19.09■□□□□ 0.65
PDGFRB-203ENST00000517660 SUPT5HO00267 1087 aaKnown RBP19.06■□□□□ 0.64
PDGFRB-203ENST00000517660 CUX1P39880 1505 aa19.05■□□□□ 0.64
PDGFRB-203ENST00000517660 PBRM1Q86U86 1689 aa19.01■□□□□ 0.63
PDGFRB-203ENST00000517660 CEP170Q5SW79 1584 aa19.01■□□□□ 0.63
PDGFRB-203ENST00000517660 NUP160Q12769 1436 aa18.94■□□□□ 0.62
PDGFRB-203ENST00000517660 ABCA5Q8WWZ7 1642 aa18.94■□□□□ 0.62
PDGFRB-203ENST00000517660 SHROOM2Q13796 1616 aa18.93■□□□□ 0.62
PDGFRB-203ENST00000517660 GRIN2AQ12879 1464 aa18.93■□□□□ 0.62
PDGFRB-203ENST00000517660 ABCC10Q5T3U5 1492 aa18.9■□□□□ 0.62
PDGFRB-203ENST00000517660 ABCA10Q8WWZ4 1543 aa18.88■□□□□ 0.61
PDGFRB-203ENST00000517660 FAM69CQ0P6D2 419 aa18.86■□□□□ 0.61
PDGFRB-203ENST00000517660 ADAMTS12P58397 1594 aa18.85■□□□□ 0.61
PDGFRB-203ENST00000517660 DIP2BQ9P265 1576 aa18.85■□□□□ 0.61
PDGFRB-203ENST00000517660 KDM6BO15054 1643 aa18.82■□□□□ 0.6
PDGFRB-203ENST00000517660 MAPKBP1O60336 1514 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms