RNA–Protein interactions for RNA: ENST00000517647.1

TRIM55-205, Transcript of tripartite motif containing 55, humanhuman

TSL 2

Gene TRIM55, Length 865 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-205ENST00000517647 NISCHQ9Y2I1 1504 aa26.96■■□□□ 1.91
TRIM55-205ENST00000517647 AEBP2Q6ZN18 517 aaPredicted RBP25.45■■□□□ 1.66
TRIM55-205ENST00000517647 CCDC180Q9P1Z9 1646 aa24.03■■□□□ 1.44
TRIM55-205ENST00000517647 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
TRIM55-205ENST00000517647 ABCC9O60706 1549 aa23.43■■□□□ 1.34
TRIM55-205ENST00000517647 NACADO15069 1562 aa22.63■■□□□ 1.21
TRIM55-205ENST00000517647 RB1CC1Q8TDY2 1594 aa22.63■■□□□ 1.21
TRIM55-205ENST00000517647 MYO15BQ96JP2 1530 aa22.61■■□□□ 1.21
TRIM55-205ENST00000517647 ZCCHC6Q5VYS8 1495 aaKnown RBP22.46■■□□□ 1.19
TRIM55-205ENST00000517647 DCAF1Q9Y4B6 1507 aa22.43■■□□□ 1.18
TRIM55-205ENST00000517647 DCAF8L2P0C7V8 631 aa22.32■■□□□ 1.16
TRIM55-205ENST00000517647 UNC13AQ9UPW8 1703 aa22.03■■□□□ 1.12
TRIM55-205ENST00000517647 BICRAQ9NZM4 1560 aa21.94■■□□□ 1.1
TRIM55-205ENST00000517647 SENP3Q9H4L4 574 aaPredicted RBP21.91■■□□□ 1.1
TRIM55-205ENST00000517647 SHROOM4Q9ULL8 1493 aa21.87■■□□□ 1.09
TRIM55-205ENST00000517647 PABPN1Q86U42 306 aaKnown RBP eCLIP21.85■■□□□ 1.09
TRIM55-205ENST00000517647 SCRIBQ14160 1630 aa21.75■■□□□ 1.07
TRIM55-205ENST00000517647 DNAJC5BQ9UF47 199 aa21.62■■□□□ 1.05
TRIM55-205ENST00000517647 PHF23Q9BUL5 403 aaPredicted RBP21.5■■□□□ 1.03
TRIM55-205ENST00000517647 EIF4G1Q04637 1599 aaKnown RBP21.35■■□□□ 1.01
TRIM55-205ENST00000517647 CC2D2AQ9P2K1 1620 aa21.25■□□□□ 0.99
TRIM55-205ENST00000517647 CECR2Q9BXF3 1484 aa21.13■□□□□ 0.97
TRIM55-205ENST00000517647 NCAPD3P42695 1498 aa20.91■□□□□ 0.94
TRIM55-205ENST00000517647 BAZ1AQ9NRL2 1556 aaPredicted RBP20.91■□□□□ 0.94
TRIM55-205ENST00000517647 SMARCA4P51532 1647 aa20.9■□□□□ 0.94
TRIM55-205ENST00000517647 ATAD2BQ9ULI0 1458 aa20.84■□□□□ 0.93
TRIM55-205ENST00000517647 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
TRIM55-205ENST00000517647 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
TRIM55-205ENST00000517647 HMGXB3Q12766 1538 aa20.78■□□□□ 0.92
TRIM55-205ENST00000517647 MROH2BQ7Z745 1585 aa20.72■□□□□ 0.91
TRIM55-205ENST00000517647 BAZ1BQ9UIG0 1483 aaKnown RBP20.62■□□□□ 0.89
TRIM55-205ENST00000517647 RSF1Q96T23 1441 aaPredicted RBP20.5■□□□□ 0.87
TRIM55-205ENST00000517647 WIZO95785 1651 aa20.44■□□□□ 0.86
TRIM55-205ENST00000517647 FOXD1Q16676 465 aa20.38■□□□□ 0.85
TRIM55-205ENST00000517647 LAMC3Q9Y6N6 1575 aa20.33■□□□□ 0.84
TRIM55-205ENST00000517647 TOP2AP11388 1531 aaKnown RBP20.31■□□□□ 0.84
TRIM55-205ENST00000517647 NESP48681 1621 aa20.26■□□□□ 0.83
TRIM55-205ENST00000517647 CADPSQ9ULU8 1353 aa20.25■□□□□ 0.83
TRIM55-205ENST00000517647 ERCC6Q03468 1493 aa20.22■□□□□ 0.83
TRIM55-205ENST00000517647 PDS5BQ9NTI5 1447 aa20.19■□□□□ 0.82
TRIM55-205ENST00000517647 CUX2O14529 1486 aa20.18■□□□□ 0.82
TRIM55-205ENST00000517647 CFTRP13569 1480 aa20.13■□□□□ 0.81
TRIM55-205ENST00000517647 CCDC88BA6NC98 1476 aa20.05■□□□□ 0.8
TRIM55-205ENST00000517647 THOC2Q8NI27 1593 aaKnown RBP20.04■□□□□ 0.8
TRIM55-205ENST00000517647 KIF21AQ7Z4S6 1674 aa20.01■□□□□ 0.79
TRIM55-205ENST00000517647 FANCD2Q9BXW9 1451 aa19.97■□□□□ 0.79
TRIM55-205ENST00000517647 MRC2Q9UBG0 1479 aa19.95■□□□□ 0.78
TRIM55-205ENST00000517647 CEP164Q9UPV0 1460 aa19.94■□□□□ 0.78
TRIM55-205ENST00000517647 WDR62O43379 1518 aa19.92■□□□□ 0.78
TRIM55-205ENST00000517647 PRDM2Q13029 1718 aa19.9■□□□□ 0.78
TRIM55-205ENST00000517647 URB2Q14146 1524 aaKnown RBP19.76■□□□□ 0.75
TRIM55-205ENST00000517647 ABCC8Q09428 1581 aa19.73■□□□□ 0.75
TRIM55-205ENST00000517647 SUPT5HO00267 1087 aaKnown RBP19.72■□□□□ 0.75
TRIM55-205ENST00000517647 TOPBP1Q92547 1522 aa19.65■□□□□ 0.74
TRIM55-205ENST00000517647 DNMBPQ6XZF7 1577 aa19.62■□□□□ 0.73
TRIM55-205ENST00000517647 DNAJC5Q9H3Z4 198 aa19.62■□□□□ 0.73
TRIM55-205ENST00000517647 IFT140Q96RY7 1462 aa19.58■□□□□ 0.72
TRIM55-205ENST00000517647 POTEDQ86YR6 584 aa19.5■□□□□ 0.71
TRIM55-205ENST00000517647 POLA1P09884 1462 aaPredicted RBP19.48■□□□□ 0.71
TRIM55-205ENST00000517647 TARBP1Q13395 1621 aaKnown RBP19.45■□□□□ 0.7
TRIM55-205ENST00000517647 CUX1P39880 1505 aa19.45■□□□□ 0.7
TRIM55-205ENST00000517647 ZNF608Q9ULD9 1512 aaPredicted RBP19.41■□□□□ 0.7
TRIM55-205ENST00000517647 WDR97A6NE52 1622 aa19.4■□□□□ 0.7
TRIM55-205ENST00000517647 SOGA1O94964 1423 aa19.38■□□□□ 0.69
TRIM55-205ENST00000517647 FGD5Q6ZNL6 1462 aa19.38■□□□□ 0.69
TRIM55-205ENST00000517647 MSH5O43196 834 aa19.34■□□□□ 0.69
TRIM55-205ENST00000517647 EIF4G3O43432 1585 aaKnown RBP19.33■□□□□ 0.69
TRIM55-205ENST00000517647 RAD54L2Q9Y4B4 1467 aa19.32■□□□□ 0.68
TRIM55-205ENST00000517647 WRNQ14191 1432 aaPredicted RBP eCLIP19.31■□□□□ 0.68
TRIM55-205ENST00000517647 TOP2BQ02880 1626 aa19.29■□□□□ 0.68
TRIM55-205ENST00000517647 BIVM-ERCC5R4GMW8 1640 aa19.29■□□□□ 0.68
TRIM55-205ENST00000517647 AQRO60306 1485 aaKnown RBP eCLIP19.28■□□□□ 0.68
TRIM55-205ENST00000517647 ABCA10Q8WWZ4 1543 aa19.27■□□□□ 0.68
TRIM55-205ENST00000517647 OSCARQ8IYS5 282 aa19.27■□□□□ 0.68
TRIM55-205ENST00000517647 TDRD9Q8NDG6 1382 aaKnown RBP19.23■□□□□ 0.67
TRIM55-205ENST00000517647 SYNJ1O43426 1573 aa19.22■□□□□ 0.67
TRIM55-205ENST00000517647 GRIN2BQ13224 1484 aa19.2■□□□□ 0.66
TRIM55-205ENST00000517647 MAGI1Q96QZ7 1491 aaPredicted RBP19.18■□□□□ 0.66
TRIM55-205ENST00000517647 GAPVD1Q14C86 1478 aa19.16■□□□□ 0.66
TRIM55-205ENST00000517647 ABCA5Q8WWZ7 1642 aa19.16■□□□□ 0.66
TRIM55-205ENST00000517647 SNAPC4Q5SXM2 1469 aa19.11■□□□□ 0.65
TRIM55-205ENST00000517647 SYNJ2O15056 1496 aa19.09■□□□□ 0.65
TRIM55-205ENST00000517647 CHD1O14646 1710 aa19.07■□□□□ 0.64
TRIM55-205ENST00000517647 PBRM1Q86U86 1689 aa19.07■□□□□ 0.64
TRIM55-205ENST00000517647 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
TRIM55-205ENST00000517647 CHMP7Q8WUX9 453 aaPredicted RBP19.02■□□□□ 0.64
TRIM55-205ENST00000517647 PIAS4Q8N2W9 510 aaPredicted RBP19■□□□□ 0.63
TRIM55-205ENST00000517647 FBLN2P98095 1184 aa18.98■□□□□ 0.63
TRIM55-205ENST00000517647 FHAD1B1AJZ9 1412 aa18.98■□□□□ 0.63
TRIM55-205ENST00000517647 CLASP1Q7Z460 1538 aa18.97■□□□□ 0.63
TRIM55-205ENST00000517647 ADAMTS12P58397 1594 aa18.96■□□□□ 0.63
TRIM55-205ENST00000517647 GRIN2AQ12879 1464 aa18.93■□□□□ 0.62
TRIM55-205ENST00000517647 ARHGEF11O15085 1522 aa18.93■□□□□ 0.62
TRIM55-205ENST00000517647 KIF27Q86VH2 1401 aa18.92■□□□□ 0.62
TRIM55-205ENST00000517647 PLPPR3Q6T4P5 718 aa18.92■□□□□ 0.62
TRIM55-205ENST00000517647 RIMBP3CA6NJZ7 1639 aa18.91■□□□□ 0.62
TRIM55-205ENST00000517647 RIMBP3BA6NNM3 1639 aa18.91■□□□□ 0.62
TRIM55-205ENST00000517647 RIMBP3Q9UFD9 1639 aa18.91■□□□□ 0.62
TRIM55-205ENST00000517647 NUP160Q12769 1436 aa18.91■□□□□ 0.62
TRIM55-205ENST00000517647 IGF1RP08069 1367 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms